Wall clock time and date at job start Tue Mar 31 2020 21:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00320 * 2 1 4 4 C 1.34782 * 119.99836 * 180.02562 * 2 1 3 5 5 O 1.21281 * 119.99893 * 0.02562 * 4 2 1 6 6 C 1.50697 * 120.00040 * 179.97438 * 4 2 1 7 7 N 1.46497 * 109.47311 * 179.97438 * 6 4 2 8 8 C 1.35815 * 126.05337 * 124.97395 * 7 6 4 9 9 C 1.35751 * 107.55952 * 180.02562 * 8 7 6 10 10 N 1.40770 * 126.07492 * 180.26537 * 9 8 7 11 11 C 1.34782 * 119.99708 * 179.71700 * 10 9 8 12 12 O 1.21300 * 120.00112 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99579 * 180.02562 * 11 10 9 14 14 H 1.08996 * 109.47378 * 319.99385 * 13 11 10 15 15 N 1.46907 * 109.46841 * 200.00266 * 13 11 10 16 16 C 1.52999 * 109.47311 * 80.00394 * 13 11 10 17 17 C 1.52998 * 109.46901 * 185.00080 * 16 13 11 18 18 C 1.52999 * 109.46901 * 180.02562 * 17 16 13 19 19 C 1.50698 * 109.47371 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99890 * 359.97438 * 19 18 17 21 21 C 1.37882 * 120.00287 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99624 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00031 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47247 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46952 * 120.00202 * 23 21 19 26 26 H 1.48497 * 109.47552 * 240.00349 * 23 21 19 27 27 C 1.40255 * 107.84376 * 0.02562 * 9 8 7 28 28 N 1.30831 * 108.33384 * 359.97438 * 27 9 8 29 29 H 1.09002 * 109.47278 * 270.00358 * 1 2 3 30 30 H 1.09005 * 109.46977 * 29.99877 * 1 2 3 31 31 H 1.08997 * 109.47522 * 149.99967 * 1 2 3 32 32 H 1.09007 * 109.47050 * 240.00348 * 3 2 1 33 33 H 1.08998 * 109.47011 * 359.97438 * 3 2 1 34 34 H 1.08992 * 109.47528 * 120.00068 * 3 2 1 35 35 H 1.09006 * 109.46931 * 60.00117 * 6 4 2 36 36 H 1.09001 * 109.47489 * 300.00743 * 6 4 2 37 37 H 1.07997 * 126.21692 * 0.02562 * 8 7 6 38 38 H 0.96996 * 120.00414 * 359.71294 * 10 9 8 39 39 H 1.00905 * 110.99628 * 299.99775 * 15 13 11 40 40 H 1.00892 * 110.99920 * 63.95050 * 15 13 11 41 41 H 1.09003 * 109.46690 * 304.99415 * 16 13 11 42 42 H 1.08990 * 109.47342 * 64.99326 * 16 13 11 43 43 H 1.09003 * 109.46905 * 299.99203 * 17 16 13 44 44 H 1.08997 * 109.47952 * 59.99759 * 17 16 13 45 45 H 1.09007 * 109.47141 * 299.99543 * 18 17 16 46 46 H 1.08995 * 109.47749 * 59.99118 * 18 17 16 47 47 H 0.97007 * 119.99702 * 179.97438 * 22 21 19 48 48 H 1.08000 * 125.83288 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1673 -0.0005 5 8 1.5324 -2.2176 -0.0015 6 6 3.6458 -1.1673 -0.0011 7 7 4.1342 -2.5485 -0.0010 8 6 4.9937 -3.0925 -0.9009 9 6 5.1898 -4.3887 -0.5482 10 7 6.0168 -5.3129 -1.2141 11 6 6.1261 -6.5743 -0.7520 12 8 5.5116 -6.9132 0.2373 13 6 7.0119 -7.5636 -1.4646 14 1 6.9096 -7.4328 -2.5418 15 7 6.6148 -8.9295 -1.0974 16 6 8.4682 -7.3292 -1.0582 17 6 9.3795 -8.2486 -1.8738 18 6 10.8357 -8.0147 -1.4670 19 6 11.7333 -8.9207 -2.2698 20 1 11.3077 -9.5962 -2.9971 21 6 13.0980 -8.8874 -2.0758 22 7 13.6163 -8.0653 -1.1898 23 14 14.2105 -10.0110 -3.0704 24 1 13.3867 -10.8336 -3.9923 25 1 15.1652 -9.1909 -3.8586 26 1 14.9642 -10.9013 -2.1515 27 6 4.4262 -4.6416 0.6008 28 7 3.7965 -3.5421 0.9268 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5138 32 1 2.8242 1.3264 -0.8901 33 1 1.4893 2.0972 -0.0005 34 1 2.8242 1.3264 0.8899 35 1 4.0095 -0.6537 0.8889 36 1 4.0089 -0.6532 -0.8910 37 1 5.4399 -2.5860 -1.7439 38 1 6.5079 -5.0421 -2.0055 39 1 6.7009 -9.0760 -0.1028 40 1 5.6779 -9.1307 -1.4128 41 1 8.7359 -6.2900 -1.2492 42 1 8.5888 -7.5463 0.0030 43 1 9.1118 -9.2879 -1.6828 44 1 9.2590 -8.0315 -2.9351 45 1 11.1038 -6.9755 -1.6575 46 1 10.9560 -8.2321 -0.4057 47 1 14.5764 -8.0421 -1.0530 48 1 4.3681 -5.5832 1.1266 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118322785.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:35 Heat of formation + Delta-G solvation = -20.985452 kcal Electronic energy + Delta-G solvation = -28033.658275 eV Core-core repulsion = 23931.275816 eV Total energy + Delta-G solvation = -4102.382459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.45697 -41.05099 -40.50369 -37.17011 -36.64532 -35.93518 -35.21547 -34.02951 -33.08369 -30.84769 -29.83456 -29.25806 -28.16166 -26.79034 -26.13337 -24.31323 -22.95205 -22.04057 -21.65599 -21.17569 -20.23871 -18.58230 -18.40989 -18.27300 -18.08043 -17.43564 -17.10478 -16.79679 -16.50026 -16.43788 -16.10649 -15.76909 -15.28958 -15.27372 -15.00804 -14.54135 -14.42177 -14.26838 -14.23110 -13.87513 -13.62740 -13.58095 -13.50961 -13.23571 -13.07982 -12.85081 -12.83256 -12.46530 -12.30547 -12.13492 -11.93690 -11.75751 -11.42440 -11.33084 -11.19591 -11.17050 -10.90148 -10.49441 -10.36242 -9.75378 -9.69881 -8.75370 -8.14470 -6.24424 0.69416 1.26715 1.32592 1.42959 1.43997 1.44214 1.57233 2.01078 2.09667 2.20313 2.45835 3.18828 3.34570 3.52363 3.67269 3.75859 3.94783 4.05638 4.09482 4.14356 4.20810 4.28908 4.38996 4.47205 4.54517 4.57387 4.60608 4.75037 4.77675 4.86753 4.96943 4.97797 5.09963 5.19539 5.32552 5.39346 5.42242 5.65061 5.70754 5.89188 5.95998 5.98132 6.07060 6.24257 6.34129 6.42881 6.50923 6.64777 6.93930 7.03279 7.16603 7.44570 8.97414 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024268 B = 0.001657 C = 0.001585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.508115 B =16895.533695 C =17660.024753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.619 5.619 3 C 0.063 3.937 4 C 0.487 3.513 5 O -0.572 6.572 6 C 0.121 3.879 7 N -0.364 5.364 8 C 0.042 3.958 9 C -0.021 4.021 10 N -0.626 5.626 11 C 0.482 3.518 12 O -0.569 6.569 13 C 0.095 3.905 14 H 0.129 0.871 15 N -0.817 5.817 16 C -0.095 4.095 17 C -0.084 4.084 18 C 0.020 3.980 19 C -0.538 4.538 20 H 0.060 0.940 21 C -0.003 4.003 22 N -0.935 5.935 23 Si 0.963 3.037 24 H -0.261 1.261 25 H -0.277 1.277 26 H -0.282 1.282 27 C 0.025 3.975 28 N -0.300 5.300 29 H 0.053 0.947 30 H 0.105 0.895 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.137 0.863 36 H 0.176 0.824 37 H 0.231 0.769 38 H 0.428 0.572 39 H 0.346 0.654 40 H 0.349 0.651 41 H 0.076 0.924 42 H 0.044 0.956 43 H 0.055 0.945 44 H 0.059 0.941 45 H -0.006 1.006 46 H -0.017 1.017 47 H 0.262 0.738 48 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.572 24.919 -2.783 35.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.353 5.353 3 C -0.078 4.078 4 C 0.274 3.726 5 O -0.450 6.450 6 C -0.003 4.003 7 N -0.150 5.150 8 C -0.105 4.105 9 C -0.125 4.125 10 N -0.273 5.273 11 C 0.269 3.731 12 O -0.448 6.448 13 C -0.021 4.021 14 H 0.147 0.853 15 N -0.346 5.346 16 C -0.133 4.133 17 C -0.121 4.121 18 C -0.017 4.017 19 C -0.576 4.576 20 H 0.078 0.922 21 C -0.200 4.200 22 N -0.576 5.576 23 Si 0.788 3.212 24 H -0.185 1.185 25 H -0.203 1.203 26 H -0.208 1.208 27 C -0.162 4.162 28 N -0.122 5.122 29 H 0.072 0.928 30 H 0.123 0.877 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.155 0.845 36 H 0.194 0.806 37 H 0.247 0.753 38 H 0.267 0.733 39 H 0.160 0.840 40 H 0.163 0.837 41 H 0.095 0.905 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.013 0.987 46 H 0.001 0.999 47 H 0.070 0.930 48 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -25.404 24.602 -1.688 35.404 hybrid contribution 0.607 -0.509 -0.143 0.805 sum -24.797 24.093 -1.831 34.622 Atomic orbital electron populations 1.21753 0.78711 1.03493 1.02050 1.47904 1.07712 1.06789 1.72866 1.22265 0.98289 0.83504 1.03765 1.21205 0.91104 0.83746 0.76505 1.90799 1.70757 1.33094 1.50375 1.21922 0.90588 0.78111 1.09637 1.48060 1.35708 1.09905 1.21286 1.22613 0.97307 0.92508 0.98098 1.17992 1.03879 0.91500 0.99160 1.42875 1.44823 1.09077 1.30492 1.22690 0.82274 0.83373 0.84795 1.90566 1.47951 1.78759 1.27516 1.21607 0.93170 0.86116 1.01219 0.85291 1.59073 1.32036 1.21356 1.22163 1.21479 0.91425 1.00646 0.99748 1.21283 0.93218 0.99037 0.98611 1.19075 0.92908 0.95161 0.94581 1.21782 0.92388 1.21794 1.21603 0.92163 1.25975 1.00159 0.97303 0.96576 1.70112 1.12267 1.39263 1.35957 0.85429 0.78534 0.78673 0.78590 1.18520 1.20291 1.20772 1.24327 0.96524 0.98027 0.97333 1.77408 1.22377 0.97304 1.15104 0.92836 0.87682 0.93226 0.89344 0.88217 0.90445 0.84497 0.80637 0.75262 0.73283 0.84032 0.83726 0.90496 0.93680 0.92646 0.92271 0.98718 0.99875 0.92967 0.80254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 10.41 127.77 1.33 2.11 16 2 N -0.62 -5.75 3.27 -871.90 -2.85 -8.61 16 3 C 0.06 -0.08 9.74 127.77 1.24 1.17 16 4 C 0.49 8.27 7.70 87.66 0.68 8.95 16 5 O -0.57 -17.08 15.29 -3.03 -0.05 -17.12 16 6 C 0.12 1.18 5.81 85.63 0.50 1.68 16 7 N -0.36 -7.36 3.42 -350.72 -1.20 -8.56 16 8 C 0.04 0.69 11.52 83.50 0.96 1.66 16 9 C -0.02 -0.51 6.90 37.62 0.26 -0.25 16 10 N -0.63 -13.29 5.47 -304.04 -1.66 -14.95 16 11 C 0.48 12.88 7.04 87.66 0.62 13.50 16 12 O -0.57 -19.11 13.41 -3.09 -0.04 -19.16 16 13 C 0.09 2.39 3.15 44.17 0.14 2.53 16 14 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 15 N -0.82 -21.62 8.44 -171.80 -1.45 -23.07 16 16 C -0.09 -3.00 4.84 30.59 0.15 -2.85 16 17 C -0.08 -3.32 5.04 30.59 0.15 -3.17 16 18 C 0.02 1.04 4.97 29.85 0.15 1.19 16 19 C -0.54 -30.78 9.11 25.60 0.23 -30.55 16 20 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 21 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 22 N -0.94 -57.39 13.29 21.45 0.28 -57.10 16 23 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 24 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 25 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 26 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 27 C 0.03 0.79 10.84 85.33 0.92 1.71 16 28 N -0.30 -9.19 11.63 -56.77 -0.66 -9.85 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.10 0.25 7.92 -2.38 -0.02 0.23 16 31 H 0.05 0.76 7.42 -2.39 -0.02 0.74 16 32 H 0.09 -0.47 7.85 -2.38 -0.02 -0.49 16 33 H 0.10 -0.40 7.79 -2.39 -0.02 -0.42 16 34 H 0.08 -0.22 7.85 -2.39 -0.02 -0.24 16 35 H 0.14 0.73 7.87 -2.38 -0.02 0.71 16 36 H 0.18 -0.18 7.80 -2.39 -0.02 -0.20 16 37 H 0.23 1.13 8.06 -2.91 -0.02 1.11 16 38 H 0.43 5.84 8.83 -92.71 -0.82 5.03 16 39 H 0.35 9.87 8.58 -89.69 -0.77 9.10 16 40 H 0.35 7.99 9.06 -89.70 -0.81 7.18 16 41 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.05 2.29 7.75 -2.39 -0.02 2.27 16 44 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 45 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 46 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 47 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 48 H 0.18 6.33 5.92 -2.91 -0.02 6.31 16 Total: -1.00 -92.72 403.36 0.79 -91.93 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -1.40 Total: 21.92 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 7.80 Total: -2.04 kcal Atomic # 7 Polarization: -114.60 SS G_CDS: -7.55 Total: -122.15 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -0.09 Total: -36.28 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -92.72 0.79 -91.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118322785.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.940 kcal (2) G-P(sol) polarization free energy of solvation -92.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds