Wall clock time and date at job start Tue Mar 31 2020 21:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46495 * 120.00189 * 2 1 4 4 C 1.34775 * 119.99821 * 180.02562 * 2 1 3 5 5 O 1.21281 * 120.00408 * 359.97438 * 4 2 1 6 6 C 1.50703 * 119.99911 * 180.02562 * 4 2 1 7 7 N 1.46508 * 109.47243 * 180.02562 * 6 4 2 8 8 C 1.35805 * 126.05702 * 124.99883 * 7 6 4 9 9 C 1.35755 * 107.56439 * 179.97438 * 8 7 6 10 10 N 1.40764 * 126.07647 * 179.97438 * 9 8 7 11 11 C 1.34778 * 119.99208 * 180.02562 * 10 9 8 12 12 O 1.21298 * 120.00566 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.99531 * 180.02562 * 11 10 9 14 14 H 1.08999 * 109.47278 * 40.00540 * 13 11 10 15 15 N 1.46905 * 109.46823 * 160.00142 * 13 11 10 16 16 C 1.52995 * 109.47328 * 279.99908 * 13 11 10 17 17 C 1.52993 * 109.47578 * 175.00055 * 16 13 11 18 18 C 1.52995 * 109.47578 * 180.02562 * 17 16 13 19 19 C 1.50701 * 109.47299 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00203 * 0.02562 * 19 18 17 21 21 C 1.37883 * 119.99765 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00145 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99547 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47311 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46744 * 119.99977 * 23 21 19 26 26 H 1.48506 * 109.46814 * 239.99581 * 23 21 19 27 27 C 1.40248 * 107.83771 * 0.02562 * 9 8 7 28 28 N 1.30831 * 108.33641 * 359.97438 * 27 9 8 29 29 H 1.08997 * 109.47495 * 269.99283 * 1 2 3 30 30 H 1.08999 * 109.47496 * 29.99849 * 1 2 3 31 31 H 1.09006 * 109.47050 * 150.00154 * 1 2 3 32 32 H 1.08993 * 109.47426 * 269.99998 * 3 2 1 33 33 H 1.09007 * 109.46855 * 30.00399 * 3 2 1 34 34 H 1.09005 * 109.47182 * 149.99897 * 3 2 1 35 35 H 1.09000 * 109.47484 * 59.99703 * 6 4 2 36 36 H 1.08999 * 109.46850 * 299.99440 * 6 4 2 37 37 H 1.08006 * 126.21461 * 0.25807 * 8 7 6 38 38 H 0.96997 * 120.00848 * 0.02562 * 10 9 8 39 39 H 1.00901 * 111.00013 * 296.04438 * 15 13 11 40 40 H 1.00898 * 110.99978 * 60.00250 * 15 13 11 41 41 H 1.09005 * 109.47386 * 295.00542 * 16 13 11 42 42 H 1.09008 * 109.46935 * 54.99811 * 16 13 11 43 43 H 1.09005 * 109.47160 * 300.00626 * 17 16 13 44 44 H 1.09008 * 109.47187 * 59.99910 * 17 16 13 45 45 H 1.08998 * 109.47710 * 300.00262 * 18 17 16 46 46 H 1.09010 * 109.47099 * 60.00276 * 18 17 16 47 47 H 0.97001 * 119.99803 * 180.02562 * 22 21 19 48 48 H 1.07997 * 125.83179 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5324 -2.2176 -0.0005 6 6 3.6458 -1.1672 0.0001 7 7 4.1342 -2.5485 -0.0013 8 6 4.9947 -3.0912 -0.9009 9 6 5.1913 -4.3876 -0.5492 10 7 6.0149 -5.3123 -1.2186 11 6 6.1203 -6.5755 -0.7607 12 8 5.5051 -6.9157 0.2278 13 6 7.0025 -7.5654 -1.4769 14 1 7.9202 -7.0706 -1.7950 15 7 7.3325 -8.6729 -0.5700 16 6 6.2665 -8.1115 -2.7020 17 6 7.2052 -9.0203 -3.4979 18 6 6.4694 -9.5659 -4.7233 19 6 7.3939 -10.4616 -5.5070 20 1 8.4050 -10.6256 -5.1650 21 6 6.9488 -11.0716 -6.6606 22 7 5.7173 -10.8721 -7.0769 23 14 8.0946 -12.1824 -7.6316 24 1 9.4160 -12.2417 -6.9567 25 1 7.5147 -13.5475 -7.7064 26 1 8.2640 -11.6406 -9.0038 27 6 4.4270 -4.6420 0.5988 28 7 3.7964 -3.5431 0.9253 29 1 -0.3634 -0.0001 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 2.3792 1.5833 -1.0276 33 1 1.6084 2.0283 0.5139 34 1 3.1499 1.1383 0.5139 35 1 4.0089 -0.6540 0.8905 36 1 4.0095 -0.6529 -0.8895 37 1 5.4447 -2.5825 -1.7407 38 1 6.5066 -5.0404 -2.0093 39 1 7.8754 -8.3474 0.2157 40 1 6.4978 -9.1480 -0.2608 41 1 5.3960 -8.6823 -2.3784 42 1 5.9435 -7.2821 -3.3314 43 1 8.0757 -8.4495 -3.8215 44 1 7.5282 -9.8496 -2.8685 45 1 5.5988 -10.1366 -4.4002 46 1 6.1468 -8.7363 -5.3527 47 1 5.4041 -11.3016 -7.8883 48 1 4.3689 -5.5840 1.1238 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118322786.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:40 Heat of formation + Delta-G solvation = 11.852070 kcal Electronic energy + Delta-G solvation = -28095.901715 eV Core-core repulsion = 23994.943198 eV Total energy + Delta-G solvation = -4100.958517 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.59157 -40.26482 -39.61401 -36.09062 -35.80896 -34.95795 -33.38282 -33.20416 -31.33197 -30.03564 -29.07116 -28.01549 -27.48630 -25.90400 -24.93036 -22.75989 -22.01427 -21.06319 -20.32975 -19.98555 -19.47089 -17.81557 -17.70486 -17.08963 -16.76958 -16.39726 -16.22433 -15.87560 -15.61528 -15.27918 -14.59416 -14.51027 -14.41940 -14.17307 -13.94624 -13.88417 -13.58888 -13.30295 -13.22480 -13.03736 -12.93035 -12.65434 -12.56493 -12.38698 -11.73179 -11.51347 -11.13326 -10.99440 -10.85416 -10.73962 -10.55683 -10.42129 -10.40079 -10.13831 -9.58310 -9.49912 -9.28134 -9.20428 -9.00935 -8.58542 -8.27726 -7.86583 -5.93130 -3.94690 1.50055 1.95944 2.06534 2.34756 2.52601 3.04057 3.14302 3.35507 3.42898 3.47580 3.78906 4.15172 4.33154 4.47977 4.49963 4.52154 4.59551 4.66305 4.77064 4.80729 4.96772 5.00369 5.06133 5.17328 5.33625 5.38774 5.41401 5.42730 5.50389 5.80674 5.94337 6.05309 6.14805 6.46614 6.55183 6.72810 6.80165 6.84670 7.03516 7.10163 7.26945 7.33752 7.52562 7.56709 7.63057 7.77804 7.93153 8.08725 8.10139 8.51924 9.13413 9.69035 11.18310 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016560 B = 0.001780 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.417141 B =15730.359575 C =16794.418382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.625 5.625 3 C 0.073 3.927 4 C 0.496 3.504 5 O -0.500 6.500 6 C 0.129 3.871 7 N -0.369 5.369 8 C 0.011 3.989 9 C 0.012 3.988 10 N -0.643 5.643 11 C 0.484 3.516 12 O -0.537 6.537 13 C 0.083 3.917 14 H 0.103 0.897 15 N -0.810 5.810 16 C -0.105 4.105 17 C -0.099 4.099 18 C 0.018 3.982 19 C -0.515 4.515 20 H 0.056 0.944 21 C 0.054 3.946 22 N -0.897 5.897 23 Si 0.890 3.110 24 H -0.272 1.272 25 H -0.285 1.285 26 H -0.285 1.285 27 C 0.051 3.949 28 N -0.259 5.259 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.124 0.876 37 H 0.177 0.823 38 H 0.412 0.588 39 H 0.339 0.661 40 H 0.351 0.649 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.045 0.955 44 H 0.064 0.936 45 H 0.014 0.986 46 H 0.012 0.988 47 H 0.259 0.741 48 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.493 29.925 15.751 33.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.362 5.362 3 C -0.070 4.070 4 C 0.281 3.719 5 O -0.373 6.373 6 C 0.003 3.997 7 N -0.155 5.155 8 C -0.135 4.135 9 C -0.092 4.092 10 N -0.288 5.288 11 C 0.271 3.729 12 O -0.413 6.413 13 C -0.033 4.033 14 H 0.121 0.879 15 N -0.339 5.339 16 C -0.143 4.143 17 C -0.137 4.137 18 C -0.019 4.019 19 C -0.554 4.554 20 H 0.074 0.926 21 C -0.147 4.147 22 N -0.537 5.537 23 Si 0.718 3.282 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.212 1.212 27 C -0.138 4.138 28 N -0.079 5.079 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.131 0.869 36 H 0.142 0.858 37 H 0.194 0.806 38 H 0.248 0.752 39 H 0.151 0.849 40 H 0.166 0.834 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.033 0.967 46 H 0.030 0.970 47 H 0.068 0.932 48 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -4.803 29.342 16.501 34.005 hybrid contribution 0.685 0.046 -1.035 1.242 sum -4.117 29.388 15.466 33.463 Atomic orbital electron populations 1.21659 0.78511 1.03349 1.02113 1.47725 1.07448 1.06019 1.74960 1.21901 0.97334 0.85461 1.02303 1.20682 0.89923 0.83885 0.77428 1.90835 1.69299 1.30563 1.46587 1.21389 0.92513 0.79966 1.05857 1.47648 1.36357 1.09060 1.22412 1.21817 0.99611 0.93796 0.98257 1.17818 1.02766 0.89895 0.98752 1.43096 1.45638 1.09846 1.30231 1.22732 0.82844 0.82378 0.84993 1.90556 1.46115 1.77924 1.26722 1.21753 0.97400 0.89451 0.94713 0.87944 1.59048 1.26288 1.25750 1.22766 1.21681 0.99263 1.00188 0.93199 1.21536 0.96938 0.97784 0.97458 1.19135 0.95628 0.95697 0.91450 1.21324 0.98620 1.27629 1.07812 0.92578 1.25043 0.95087 0.96865 0.97659 1.69982 1.15961 1.44261 1.23491 0.86562 0.81153 0.80569 0.79869 1.19706 1.21091 1.21161 1.24540 0.94883 0.98328 0.96009 1.77490 1.21012 0.96284 1.13122 0.92530 0.91000 0.90367 0.92017 0.90442 0.90878 0.86939 0.85831 0.80553 0.75243 0.84902 0.83407 0.91760 0.91851 0.93650 0.91776 0.96736 0.96952 0.93182 0.77851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 10.44 59.84 0.62 1.11 16 2 N -0.62 -3.75 3.27 -189.52 -0.62 -4.37 16 3 C 0.07 0.11 10.24 59.84 0.61 0.72 16 4 C 0.50 4.67 7.70 -10.98 -0.08 4.58 16 5 O -0.50 -7.52 15.28 5.56 0.08 -7.43 16 6 C 0.13 0.83 5.55 -5.19 -0.03 0.80 16 7 N -0.37 -4.05 3.43 -62.20 -0.21 -4.26 16 8 C 0.01 0.11 11.52 -16.68 -0.19 -0.09 16 9 C 0.01 0.16 6.90 -83.89 -0.58 -0.42 16 10 N -0.64 -7.27 5.47 -10.04 -0.05 -7.32 16 11 C 0.48 6.53 7.04 -10.98 -0.08 6.45 16 12 O -0.54 -8.63 13.41 5.54 0.07 -8.56 16 13 C 0.08 1.09 3.15 -68.86 -0.22 0.87 16 14 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 15 N -0.81 -10.77 8.44 -5.65 -0.05 -10.82 16 16 C -0.11 -1.71 4.84 -26.74 -0.13 -1.84 16 17 C -0.10 -2.01 5.04 -26.74 -0.13 -2.14 16 18 C 0.02 0.47 4.97 -27.89 -0.14 0.33 16 19 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 20 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 21 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 22 N -0.90 -27.43 13.29 55.43 0.74 -26.70 16 23 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 27 C 0.05 0.76 10.84 -17.22 -0.19 0.57 16 28 N -0.26 -3.83 11.63 30.70 0.36 -3.48 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.21 8.07 -51.93 -0.42 -0.21 16 31 H 0.08 0.62 7.42 -51.93 -0.39 0.23 16 32 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 33 H 0.08 0.03 8.07 -51.92 -0.42 -0.39 16 34 H 0.07 0.00 6.44 -51.93 -0.33 -0.33 16 35 H 0.11 0.45 7.40 -51.93 -0.38 0.07 16 36 H 0.12 0.30 8.04 -51.93 -0.42 -0.12 16 37 H 0.18 0.96 8.06 -52.48 -0.42 0.54 16 38 H 0.41 3.40 8.83 -40.82 -0.36 3.04 16 39 H 0.34 3.87 9.06 -39.29 -0.36 3.52 16 40 H 0.35 4.90 8.58 -39.29 -0.34 4.56 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.06 0.98 8.14 -51.92 -0.42 0.55 16 43 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.06 1.34 7.75 -51.92 -0.40 0.94 16 45 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.01 0.33 8.14 -51.92 -0.42 -0.09 16 47 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 48 H 0.21 3.23 5.92 -52.49 -0.31 2.92 16 LS Contribution 402.71 15.07 6.07 6.07 Total: -1.00 -39.97 402.71 -7.05 -47.02 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -7.47 Total: 5.60 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -0.94 Total: -2.68 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.16 Total: -56.95 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.16 Total: -15.99 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -39.97 -7.05 -47.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118322786.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.876 kcal (2) G-P(sol) polarization free energy of solvation -39.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds