Wall clock time and date at job start Tue Mar 31 2020 21:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46495 * 120.00189 * 2 1 4 4 C 1.34775 * 119.99821 * 180.02562 * 2 1 3 5 5 O 1.21281 * 120.00408 * 359.97438 * 4 2 1 6 6 C 1.50703 * 119.99911 * 180.02562 * 4 2 1 7 7 N 1.46508 * 109.47243 * 180.02562 * 6 4 2 8 8 C 1.35805 * 126.05702 * 124.99883 * 7 6 4 9 9 C 1.35755 * 107.56439 * 179.97438 * 8 7 6 10 10 N 1.40764 * 126.07647 * 179.97438 * 9 8 7 11 11 C 1.34778 * 119.99208 * 180.02562 * 10 9 8 12 12 O 1.21298 * 120.00566 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.99531 * 180.02562 * 11 10 9 14 14 H 1.08999 * 109.47278 * 40.00540 * 13 11 10 15 15 N 1.46905 * 109.46823 * 160.00142 * 13 11 10 16 16 C 1.52995 * 109.47328 * 279.99908 * 13 11 10 17 17 C 1.52993 * 109.47578 * 175.00055 * 16 13 11 18 18 C 1.52995 * 109.47578 * 180.02562 * 17 16 13 19 19 C 1.50701 * 109.47299 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00203 * 0.02562 * 19 18 17 21 21 C 1.37883 * 119.99765 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00145 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99547 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47311 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46744 * 119.99977 * 23 21 19 26 26 H 1.48506 * 109.46814 * 239.99581 * 23 21 19 27 27 C 1.40248 * 107.83771 * 0.02562 * 9 8 7 28 28 N 1.30831 * 108.33641 * 359.97438 * 27 9 8 29 29 H 1.08997 * 109.47495 * 269.99283 * 1 2 3 30 30 H 1.08999 * 109.47496 * 29.99849 * 1 2 3 31 31 H 1.09006 * 109.47050 * 150.00154 * 1 2 3 32 32 H 1.08993 * 109.47426 * 269.99998 * 3 2 1 33 33 H 1.09007 * 109.46855 * 30.00399 * 3 2 1 34 34 H 1.09005 * 109.47182 * 149.99897 * 3 2 1 35 35 H 1.09000 * 109.47484 * 59.99703 * 6 4 2 36 36 H 1.08999 * 109.46850 * 299.99440 * 6 4 2 37 37 H 1.08006 * 126.21461 * 0.25807 * 8 7 6 38 38 H 0.96997 * 120.00848 * 0.02562 * 10 9 8 39 39 H 1.00901 * 111.00013 * 296.04438 * 15 13 11 40 40 H 1.00898 * 110.99978 * 60.00250 * 15 13 11 41 41 H 1.09005 * 109.47386 * 295.00542 * 16 13 11 42 42 H 1.09008 * 109.46935 * 54.99811 * 16 13 11 43 43 H 1.09005 * 109.47160 * 300.00626 * 17 16 13 44 44 H 1.09008 * 109.47187 * 59.99910 * 17 16 13 45 45 H 1.08998 * 109.47710 * 300.00262 * 18 17 16 46 46 H 1.09010 * 109.47099 * 60.00276 * 18 17 16 47 47 H 0.97001 * 119.99803 * 180.02562 * 22 21 19 48 48 H 1.07997 * 125.83179 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5324 -2.2176 -0.0005 6 6 3.6458 -1.1672 0.0001 7 7 4.1342 -2.5485 -0.0013 8 6 4.9947 -3.0912 -0.9009 9 6 5.1913 -4.3876 -0.5492 10 7 6.0149 -5.3123 -1.2186 11 6 6.1203 -6.5755 -0.7607 12 8 5.5051 -6.9157 0.2278 13 6 7.0025 -7.5654 -1.4769 14 1 7.9202 -7.0706 -1.7950 15 7 7.3325 -8.6729 -0.5700 16 6 6.2665 -8.1115 -2.7020 17 6 7.2052 -9.0203 -3.4979 18 6 6.4694 -9.5659 -4.7233 19 6 7.3939 -10.4616 -5.5070 20 1 8.4050 -10.6256 -5.1650 21 6 6.9488 -11.0716 -6.6606 22 7 5.7173 -10.8721 -7.0769 23 14 8.0946 -12.1824 -7.6316 24 1 9.4160 -12.2417 -6.9567 25 1 7.5147 -13.5475 -7.7064 26 1 8.2640 -11.6406 -9.0038 27 6 4.4270 -4.6420 0.5988 28 7 3.7964 -3.5431 0.9253 29 1 -0.3634 -0.0001 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 2.3792 1.5833 -1.0276 33 1 1.6084 2.0283 0.5139 34 1 3.1499 1.1383 0.5139 35 1 4.0089 -0.6540 0.8905 36 1 4.0095 -0.6529 -0.8895 37 1 5.4447 -2.5825 -1.7407 38 1 6.5066 -5.0404 -2.0093 39 1 7.8754 -8.3474 0.2157 40 1 6.4978 -9.1480 -0.2608 41 1 5.3960 -8.6823 -2.3784 42 1 5.9435 -7.2821 -3.3314 43 1 8.0757 -8.4495 -3.8215 44 1 7.5282 -9.8496 -2.8685 45 1 5.5988 -10.1366 -4.4002 46 1 6.1468 -8.7363 -5.3527 47 1 5.4041 -11.3016 -7.8883 48 1 4.3689 -5.5840 1.1238 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118322786.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:39 Heat of formation + Delta-G solvation = -20.636934 kcal Electronic energy + Delta-G solvation = -28097.310544 eV Core-core repulsion = 23994.943198 eV Total energy + Delta-G solvation = -4102.367346 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.45908 -41.05838 -40.50983 -37.17696 -36.65414 -35.93812 -35.22309 -34.03819 -33.09170 -30.85558 -29.85393 -29.27208 -28.14658 -26.79363 -26.14208 -24.32240 -22.96025 -22.04337 -21.66449 -21.18176 -20.22672 -18.59072 -18.41859 -18.31915 -18.07430 -17.44741 -17.08009 -16.76731 -16.52712 -16.44693 -16.16512 -15.67938 -15.40112 -15.22105 -15.01112 -14.54674 -14.47103 -14.26775 -14.24750 -13.87261 -13.61092 -13.55702 -13.46172 -13.24207 -13.09067 -12.90041 -12.84151 -12.47694 -12.30700 -12.15030 -11.93195 -11.75719 -11.43073 -11.33675 -11.20352 -11.18405 -10.90715 -10.50753 -10.35805 -9.76027 -9.69582 -8.75302 -8.15351 -6.25707 0.68872 1.25340 1.34585 1.42345 1.43327 1.44226 1.56803 2.01372 2.06791 2.22168 2.45042 3.17816 3.33699 3.52409 3.68034 3.76268 3.95087 4.04789 4.05323 4.15002 4.20284 4.29673 4.36982 4.46062 4.54257 4.56584 4.61003 4.74388 4.78050 4.86516 4.95837 4.96237 5.09939 5.18155 5.31440 5.38264 5.40237 5.63972 5.71001 5.87790 5.96384 5.96932 6.07038 6.24496 6.32719 6.42884 6.51983 6.64896 6.92950 7.03443 7.16607 7.43421 8.96656 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016560 B = 0.001780 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.417141 B =15730.359575 C =16794.418382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.619 5.619 3 C 0.063 3.937 4 C 0.485 3.515 5 O -0.574 6.574 6 C 0.121 3.879 7 N -0.364 5.364 8 C 0.042 3.958 9 C -0.021 4.021 10 N -0.626 5.626 11 C 0.482 3.518 12 O -0.569 6.569 13 C 0.096 3.904 14 H 0.132 0.868 15 N -0.817 5.817 16 C -0.096 4.096 17 C -0.083 4.083 18 C 0.019 3.981 19 C -0.537 4.537 20 H 0.062 0.938 21 C -0.005 4.005 22 N -0.937 5.937 23 Si 0.965 3.035 24 H -0.260 1.260 25 H -0.282 1.282 26 H -0.277 1.277 27 C 0.025 3.975 28 N -0.300 5.300 29 H 0.055 0.945 30 H 0.103 0.897 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.143 0.857 36 H 0.176 0.824 37 H 0.231 0.769 38 H 0.428 0.572 39 H 0.350 0.650 40 H 0.346 0.654 41 H 0.042 0.958 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.056 0.944 45 H -0.019 1.019 46 H -0.007 1.007 47 H 0.262 0.738 48 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.990 33.171 14.764 36.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.353 5.353 3 C -0.078 4.078 4 C 0.272 3.728 5 O -0.452 6.452 6 C -0.002 4.002 7 N -0.150 5.150 8 C -0.105 4.105 9 C -0.125 4.125 10 N -0.273 5.273 11 C 0.268 3.732 12 O -0.448 6.448 13 C -0.020 4.020 14 H 0.150 0.850 15 N -0.346 5.346 16 C -0.135 4.135 17 C -0.120 4.120 18 C -0.018 4.018 19 C -0.575 4.575 20 H 0.080 0.920 21 C -0.202 4.202 22 N -0.578 5.578 23 Si 0.789 3.211 24 H -0.183 1.183 25 H -0.208 1.208 26 H -0.203 1.203 27 C -0.162 4.162 28 N -0.122 5.122 29 H 0.074 0.926 30 H 0.122 0.878 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.160 0.840 36 H 0.193 0.807 37 H 0.247 0.753 38 H 0.267 0.733 39 H 0.164 0.836 40 H 0.159 0.841 41 H 0.061 0.939 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.000 1.000 46 H 0.011 0.989 47 H 0.070 0.930 48 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.275 32.692 15.522 36.261 hybrid contribution -0.199 -0.764 -0.726 1.073 sum -2.473 31.928 14.796 35.277 Atomic orbital electron populations 1.21708 0.78866 1.03361 1.02094 1.47906 1.07672 1.06831 1.72884 1.22267 0.98013 0.83388 1.04111 1.21300 0.91276 0.83727 0.76493 1.90814 1.70825 1.33194 1.50369 1.21961 0.90395 0.78125 1.09732 1.48068 1.35591 1.09917 1.21391 1.22614 0.97323 0.92645 0.97947 1.17992 1.04097 0.91395 0.99060 1.42873 1.45104 1.08973 1.30315 1.22696 0.82580 0.83143 0.84736 1.90565 1.47294 1.78649 1.28281 1.21596 0.97928 0.89323 0.93160 0.85041 1.59066 1.26147 1.25944 1.23430 1.21490 0.97951 0.99627 0.94408 1.21277 0.97343 0.98256 0.95170 1.19082 0.94785 0.94497 0.93431 1.21784 0.99231 1.28103 1.08362 0.91994 1.26017 0.96756 0.98504 0.98947 1.70120 1.17996 1.45492 1.24152 0.85403 0.79218 0.78130 0.78313 1.18349 1.20787 1.20307 1.24325 0.96392 0.97988 0.97532 1.77405 1.22093 0.97349 1.15305 0.92645 0.87811 0.93425 0.90097 0.89077 0.88766 0.83996 0.80672 0.75256 0.73283 0.83597 0.84094 0.93903 0.90734 0.92119 0.92518 1.00027 0.98875 0.92968 0.80269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 10.44 127.77 1.33 2.22 16 2 N -0.62 -6.26 3.27 -871.90 -2.85 -9.11 16 3 C 0.06 -0.06 10.24 127.77 1.31 1.25 16 4 C 0.48 8.62 7.70 87.66 0.68 9.29 16 5 O -0.57 -18.04 15.28 -3.03 -0.05 -18.09 16 6 C 0.12 1.15 5.55 85.63 0.48 1.63 16 7 N -0.36 -7.30 3.43 -350.70 -1.20 -8.50 16 8 C 0.04 0.69 11.52 83.50 0.96 1.65 16 9 C -0.02 -0.51 6.90 37.62 0.26 -0.25 16 10 N -0.63 -13.28 5.47 -304.05 -1.66 -14.94 16 11 C 0.48 12.87 7.04 87.66 0.62 13.49 16 12 O -0.57 -19.11 13.41 -3.09 -0.04 -19.15 16 13 C 0.10 2.41 3.15 44.17 0.14 2.55 16 14 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 15 N -0.82 -21.37 8.44 -171.79 -1.45 -22.82 16 16 C -0.10 -3.13 4.84 30.59 0.15 -2.98 16 17 C -0.08 -3.32 5.04 30.59 0.15 -3.16 16 18 C 0.02 1.02 4.97 29.85 0.15 1.17 16 19 C -0.54 -30.97 9.11 25.60 0.23 -30.74 16 20 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 21 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 22 N -0.94 -58.26 13.29 21.45 0.28 -57.98 16 23 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 24 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 25 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 27 C 0.02 0.78 10.84 85.33 0.92 1.70 16 28 N -0.30 -9.14 11.63 -56.78 -0.66 -9.80 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.10 0.41 8.07 -2.39 -0.02 0.40 16 31 H 0.05 0.82 7.42 -2.38 -0.02 0.80 16 32 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 33 H 0.09 -0.27 8.07 -2.38 -0.02 -0.29 16 34 H 0.09 -0.46 6.44 -2.38 -0.02 -0.47 16 35 H 0.14 0.55 7.40 -2.39 -0.02 0.53 16 36 H 0.18 -0.20 8.04 -2.39 -0.02 -0.21 16 37 H 0.23 1.11 8.06 -2.91 -0.02 1.09 16 38 H 0.43 5.84 8.83 -92.71 -0.82 5.02 16 39 H 0.35 7.74 9.06 -89.69 -0.81 6.93 16 40 H 0.35 9.87 8.58 -89.70 -0.77 9.10 16 41 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 43 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 44 H 0.06 2.35 7.75 -2.38 -0.02 2.33 16 45 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 46 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 47 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 48 H 0.18 6.32 5.92 -2.91 -0.02 6.30 16 Total: -1.00 -94.43 402.71 0.84 -93.59 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -1.40 Total: 21.88 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: 7.84 Total: -2.03 kcal Atomic # 7 Polarization: -115.61 SS G_CDS: -7.55 Total: -123.16 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -0.09 Total: -37.24 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -94.43 0.84 -93.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118322786.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.952 kcal (2) G-P(sol) polarization free energy of solvation -94.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds