Wall clock time and date at job start Tue Mar 31 2020 20:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47703 * 2 1 4 4 C 1.46502 * 119.99690 * 269.99813 * 3 2 1 5 5 C 1.50697 * 109.47041 * 269.99812 * 4 3 2 6 6 H 1.08000 * 120.00276 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99498 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99359 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00486 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46937 * 89.99885 * 9 7 5 11 11 H 1.48498 * 109.47360 * 210.00334 * 9 7 5 12 12 H 1.48497 * 109.46977 * 330.00442 * 9 7 5 13 13 C 1.34775 * 120.00238 * 89.99270 * 3 2 1 14 14 O 1.21280 * 120.00034 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99911 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.46807 * 179.97438 * 15 13 3 17 17 C 1.46898 * 110.99459 * 179.97438 * 16 15 13 18 18 C 1.53004 * 109.46947 * 179.97438 * 17 16 15 19 19 N 1.46499 * 109.47198 * 180.02562 * 18 17 16 20 20 C 1.34777 * 119.99665 * 180.27868 * 19 18 17 21 21 O 1.21603 * 120.00257 * 359.72088 * 20 19 18 22 22 C 1.47425 * 119.99743 * 179.72398 * 20 19 18 23 23 C 1.41291 * 126.41772 * 359.68438 * 22 20 19 24 24 N 1.30442 * 108.02749 * 179.85514 * 23 22 20 25 25 N 1.39928 * 108.89515 * 0.40754 * 24 23 22 26 26 C 1.46508 * 125.75566 * 179.73766 * 25 24 23 27 27 C 1.34258 * 108.49256 * 359.73579 * 25 24 23 28 28 H 1.08998 * 109.47006 * 300.00807 * 1 2 3 29 29 H 1.09002 * 109.46638 * 60.00039 * 1 2 3 30 30 H 1.08990 * 109.47579 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47447 * 239.99032 * 2 1 3 32 32 H 1.09007 * 109.47076 * 120.00117 * 2 1 3 33 33 H 1.09006 * 109.46889 * 29.99700 * 4 3 2 34 34 H 1.09000 * 109.47133 * 149.99097 * 4 3 2 35 35 H 0.97011 * 119.99730 * 179.97438 * 8 7 5 36 36 H 1.08992 * 109.47001 * 59.99355 * 15 13 3 37 37 H 1.09001 * 109.46613 * 299.99743 * 15 13 3 38 38 H 1.00894 * 110.99641 * 303.95280 * 16 15 13 39 39 H 1.08995 * 109.47478 * 60.00426 * 17 16 15 40 40 H 1.09006 * 109.47065 * 299.99823 * 17 16 15 41 41 H 1.09009 * 109.46730 * 59.99875 * 18 17 16 42 42 H 1.08998 * 109.46846 * 300.00419 * 18 17 16 43 43 H 0.97001 * 119.99790 * 359.97438 * 19 18 17 44 44 H 1.08008 * 125.98679 * 0.02562 * 23 22 20 45 45 H 1.08998 * 109.46812 * 269.99933 * 26 25 24 46 46 H 1.08996 * 109.46938 * 29.99997 * 26 25 24 47 47 H 1.08997 * 109.47409 * 150.00432 * 26 25 24 48 48 H 1.07999 * 126.29325 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2627 2.0717 -1.2688 5 6 3.6860 1.8347 -1.7037 6 1 4.3430 1.2306 -1.0957 7 6 4.1496 2.3902 -2.8775 8 7 5.3918 2.1838 -3.2568 9 14 3.0134 3.4357 -3.9288 10 1 3.1161 4.8558 -3.5070 11 1 3.4070 3.3133 -5.3555 12 1 1.6138 2.9691 -3.7597 13 6 2.2430 2.0166 1.1672 14 8 2.6470 3.1601 1.1671 15 6 1.9922 1.3061 2.4723 16 7 2.3108 2.2060 3.5888 17 6 2.0772 1.5459 4.8801 18 6 2.4199 2.5118 6.0161 19 7 2.1874 1.8533 7.3040 20 6 2.4179 2.5194 8.4527 21 8 2.8237 3.6653 8.4202 22 6 2.1782 1.8588 9.7487 23 6 1.7047 0.5421 9.9440 24 7 1.6284 0.3269 11.2283 25 7 2.0344 1.4817 11.9062 26 6 2.0862 1.6469 13.3610 27 6 2.3687 2.4129 10.9986 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0275 -0.0005 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.5819 1.6875 -2.0284 34 1 2.0957 3.1409 -1.1386 35 1 5.7179 2.5742 -4.0828 36 1 2.6225 0.4188 2.5299 37 1 0.9443 1.0117 2.5301 38 1 3.2591 2.5440 3.5214 39 1 2.7076 0.6598 4.9546 40 1 1.0296 1.2539 4.9546 41 1 1.7897 3.3982 5.9418 42 1 3.4675 2.8035 5.9414 43 1 1.8634 0.9394 7.3298 44 1 1.4528 -0.1638 9.1662 45 1 1.1304 2.0311 13.7172 46 1 2.2877 0.6834 13.8291 47 1 2.8789 2.3491 13.6190 48 1 2.7214 3.4120 11.2079 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123348330.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:44 Heat of formation + Delta-G solvation = 16.373414 kcal Electronic energy + Delta-G solvation = -27730.126870 eV Core-core repulsion = 23629.364413 eV Total energy + Delta-G solvation = -4100.762457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.80088 -39.47225 -39.18011 -36.53779 -35.35090 -34.42065 -33.82486 -32.69614 -30.95872 -30.38826 -29.72018 -28.07433 -27.30856 -25.35045 -23.22744 -22.97725 -22.26035 -21.88612 -21.41029 -20.38404 -18.58711 -18.22853 -16.92187 -16.62400 -16.38295 -16.23761 -16.13713 -16.05935 -15.50226 -15.18807 -15.04323 -14.44043 -14.27200 -14.00329 -13.64136 -13.48220 -13.47881 -13.31604 -13.30861 -13.13336 -13.05165 -12.48526 -12.31724 -12.17568 -11.84818 -11.65668 -11.57075 -11.53587 -11.34292 -10.95638 -10.72216 -10.48325 -10.14285 -10.13533 -10.10419 -9.53312 -9.37753 -9.05421 -9.03109 -8.57669 -8.43469 -7.70519 -6.07872 -4.06528 1.10453 1.73968 1.83328 2.89886 3.20390 3.30725 3.36415 3.36680 3.39078 3.70544 3.93394 4.27345 4.37708 4.41206 4.45375 4.53804 4.64561 4.78183 4.81032 4.90114 4.98086 5.03398 5.20608 5.24456 5.26546 5.26711 5.40576 5.45899 5.57096 5.72845 5.74406 5.81940 5.91176 5.96000 6.14500 6.19283 6.28526 6.39180 6.66149 6.83954 6.99447 7.02005 7.29911 7.31418 7.37435 7.62733 8.05952 8.27451 8.48024 8.93810 9.01641 9.52784 11.05508 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025685 B = 0.001603 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.850537 B =17465.325708 C =18056.518895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.217 3.783 5 C -0.529 4.529 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.506 3.494 14 O -0.526 6.526 15 C 0.044 3.956 16 N -0.670 5.670 17 C 0.050 3.950 18 C 0.122 3.878 19 N -0.725 5.725 20 C 0.595 3.405 21 O -0.547 6.547 22 C -0.294 4.294 23 C 0.082 3.918 24 N -0.298 5.298 25 N -0.365 5.365 26 C 0.096 3.904 27 C 0.129 3.871 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.029 0.971 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.356 0.644 39 H 0.036 0.964 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.398 0.602 44 H 0.191 0.809 45 H 0.081 0.919 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.625 -7.408 29.909 32.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.097 3.903 5 C -0.567 4.567 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.704 3.296 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.292 3.708 14 O -0.402 6.402 15 C -0.088 4.088 16 N -0.304 5.304 17 C -0.080 4.080 18 C -0.002 4.002 19 N -0.377 5.377 20 C 0.383 3.617 21 O -0.425 6.425 22 C -0.309 4.309 23 C -0.106 4.106 24 N -0.118 5.118 25 N -0.143 5.143 26 C -0.045 4.045 27 C -0.022 4.022 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.114 0.886 38 H 0.176 0.824 39 H 0.054 0.946 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.232 0.768 44 H 0.207 0.793 45 H 0.099 0.901 46 H 0.112 0.888 47 H 0.111 0.889 48 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -10.880 -6.440 30.775 33.271 hybrid contribution 0.338 -0.112 -1.268 1.317 sum -10.542 -6.552 29.507 32.011 Atomic orbital electron populations 1.22237 0.96760 1.01525 1.02330 1.21437 0.93408 0.83923 1.03021 1.47929 1.64449 1.13337 1.06986 1.19631 0.97203 0.93440 0.80059 1.21335 0.95383 1.32898 1.07130 0.90851 1.24857 0.94995 0.95784 0.97371 1.69901 1.15140 1.45033 1.23580 0.86841 0.81444 0.81658 0.79694 1.19875 1.21108 1.19077 1.20176 0.78694 0.87078 0.84862 1.90687 1.44833 1.17762 1.86891 1.21875 1.02450 0.94318 0.90189 1.59967 1.33218 1.37531 0.99655 1.22077 1.01684 0.95162 0.89052 1.21255 1.02325 0.96141 0.80480 1.45622 1.69039 1.17432 1.05618 1.17170 0.76825 0.85171 0.82572 1.90805 1.46546 1.17536 1.87578 1.20260 1.20144 0.96822 0.93659 1.24080 0.97006 0.95461 0.94069 1.77193 1.22473 1.05783 1.06356 1.48446 1.49089 1.09553 1.07255 1.22026 1.03841 1.04630 0.74014 1.23016 0.95349 0.95655 0.88215 0.92911 0.92192 0.92025 0.89741 0.91565 0.95307 0.94563 0.92581 0.92581 0.88580 0.82372 0.94595 0.90337 0.90084 0.91154 0.76803 0.79273 0.90072 0.88753 0.88868 0.79340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 10.24 37.16 0.38 -1.67 16 2 C 0.11 1.58 5.93 -4.04 -0.02 1.55 16 3 N -0.59 -11.90 2.46 -175.05 -0.43 -12.33 16 4 C 0.22 5.29 4.23 -5.19 -0.02 5.27 16 5 C -0.53 -15.17 9.94 -34.44 -0.34 -15.51 16 6 H 0.07 2.30 8.06 -52.49 -0.42 1.87 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 9 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 10 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 13 C 0.51 10.06 7.71 -10.98 -0.08 9.97 16 14 O -0.53 -12.90 15.78 5.56 0.09 -12.81 16 15 C 0.04 0.61 4.72 -4.97 -0.02 0.58 16 16 N -0.67 -8.96 6.13 -115.05 -0.70 -9.66 16 17 C 0.05 0.46 5.80 -3.82 -0.02 0.44 16 18 C 0.12 1.23 5.93 -4.04 -0.02 1.21 16 19 N -0.73 -6.15 5.55 -61.38 -0.34 -6.49 16 20 C 0.60 6.45 7.81 -12.52 -0.10 6.36 16 21 O -0.55 -8.09 16.90 5.27 0.09 -8.00 16 22 C -0.29 -2.56 6.13 -105.07 -0.64 -3.21 16 23 C 0.08 0.59 11.50 -16.98 -0.20 0.40 16 24 N -0.30 -2.54 12.50 30.86 0.39 -2.16 16 25 N -0.36 -2.45 3.98 -67.60 -0.27 -2.71 16 26 C 0.10 0.22 11.44 59.85 0.68 0.91 16 27 C 0.13 0.95 11.30 -16.56 -0.19 0.76 16 28 H 0.05 0.60 7.22 -51.93 -0.38 0.22 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 32 H 0.07 0.81 6.44 -51.93 -0.33 0.47 16 33 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 34 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 35 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.06 0.68 7.40 -51.93 -0.38 0.30 16 37 H 0.10 1.12 7.19 -51.93 -0.37 0.74 16 38 H 0.36 5.18 8.43 -39.29 -0.33 4.85 16 39 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.40 2.11 7.43 -40.82 -0.30 1.81 16 44 H 0.19 0.71 7.50 -52.48 -0.39 0.32 16 45 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 46 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 47 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 48 H 0.19 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 404.98 15.07 6.10 6.10 Total: -1.00 -39.74 404.98 -7.13 -46.87 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -7.46 Total: 2.04 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: -0.70 Total: 9.09 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -0.58 Total: -60.32 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: 0.18 Total: -20.81 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -39.74 -7.13 -46.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123348330.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.240 kcal (2) G-P(sol) polarization free energy of solvation -39.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds