Wall clock time and date at job start Tue Mar 31 2020 20:19:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46501 * 109.47703 * 2 1
4 4 C 1.46502 * 119.99690 * 269.99813 * 3 2 1
5 5 C 1.50697 * 109.47041 * 269.99812 * 4 3 2
6 6 H 1.08000 * 120.00276 * 359.97438 * 5 4 3
7 7 C 1.37880 * 119.99498 * 180.02562 * 5 4 3
8 8 N 1.31515 * 119.99359 * 179.97438 * 7 5 4
9 9 Si 1.86796 * 120.00486 * 359.97438 * 7 5 4
10 10 H 1.48498 * 109.46937 * 89.99885 * 9 7 5
11 11 H 1.48498 * 109.47360 * 210.00334 * 9 7 5
12 12 H 1.48497 * 109.46977 * 330.00442 * 9 7 5
13 13 C 1.34775 * 120.00238 * 89.99270 * 3 2 1
14 14 O 1.21280 * 120.00034 * 180.02562 * 13 3 2
15 15 C 1.50705 * 119.99911 * 0.02562 * 13 3 2
16 16 N 1.46904 * 109.46807 * 179.97438 * 15 13 3
17 17 C 1.46898 * 110.99459 * 179.97438 * 16 15 13
18 18 C 1.53004 * 109.46947 * 179.97438 * 17 16 15
19 19 N 1.46499 * 109.47198 * 180.02562 * 18 17 16
20 20 C 1.34777 * 119.99665 * 180.27868 * 19 18 17
21 21 O 1.21603 * 120.00257 * 359.72088 * 20 19 18
22 22 C 1.47425 * 119.99743 * 179.72398 * 20 19 18
23 23 C 1.41291 * 126.41772 * 359.68438 * 22 20 19
24 24 N 1.30442 * 108.02749 * 179.85514 * 23 22 20
25 25 N 1.39928 * 108.89515 * 0.40754 * 24 23 22
26 26 C 1.46508 * 125.75566 * 179.73766 * 25 24 23
27 27 C 1.34258 * 108.49256 * 359.73579 * 25 24 23
28 28 H 1.08998 * 109.47006 * 300.00807 * 1 2 3
29 29 H 1.09002 * 109.46638 * 60.00039 * 1 2 3
30 30 H 1.08990 * 109.47579 * 179.97438 * 1 2 3
31 31 H 1.09002 * 109.47447 * 239.99032 * 2 1 3
32 32 H 1.09007 * 109.47076 * 120.00117 * 2 1 3
33 33 H 1.09006 * 109.46889 * 29.99700 * 4 3 2
34 34 H 1.09000 * 109.47133 * 149.99097 * 4 3 2
35 35 H 0.97011 * 119.99730 * 179.97438 * 8 7 5
36 36 H 1.08992 * 109.47001 * 59.99355 * 15 13 3
37 37 H 1.09001 * 109.46613 * 299.99743 * 15 13 3
38 38 H 1.00894 * 110.99641 * 303.95280 * 16 15 13
39 39 H 1.08995 * 109.47478 * 60.00426 * 17 16 15
40 40 H 1.09006 * 109.47065 * 299.99823 * 17 16 15
41 41 H 1.09009 * 109.46730 * 59.99875 * 18 17 16
42 42 H 1.08998 * 109.46846 * 300.00419 * 18 17 16
43 43 H 0.97001 * 119.99790 * 359.97438 * 19 18 17
44 44 H 1.08008 * 125.98679 * 0.02562 * 23 22 20
45 45 H 1.08998 * 109.46812 * 269.99933 * 26 25 24
46 46 H 1.08996 * 109.46938 * 29.99997 * 26 25 24
47 47 H 1.08997 * 109.47409 * 150.00432 * 26 25 24
48 48 H 1.07999 * 126.29325 * 179.97438 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0185 1.3812 0.0000
4 6 2.2627 2.0717 -1.2688
5 6 3.6860 1.8347 -1.7037
6 1 4.3430 1.2306 -1.0957
7 6 4.1496 2.3902 -2.8775
8 7 5.3918 2.1838 -3.2568
9 14 3.0134 3.4357 -3.9288
10 1 3.1161 4.8558 -3.5070
11 1 3.4070 3.3133 -5.3555
12 1 1.6138 2.9691 -3.7597
13 6 2.2430 2.0166 1.1672
14 8 2.6470 3.1601 1.1671
15 6 1.9922 1.3061 2.4723
16 7 2.3108 2.2060 3.5888
17 6 2.0772 1.5459 4.8801
18 6 2.4199 2.5118 6.0161
19 7 2.1874 1.8533 7.3040
20 6 2.4179 2.5194 8.4527
21 8 2.8237 3.6653 8.4202
22 6 2.1782 1.8588 9.7487
23 6 1.7047 0.5421 9.9440
24 7 1.6284 0.3269 11.2283
25 7 2.0344 1.4817 11.9062
26 6 2.0862 1.6469 13.3610
27 6 2.3687 2.4129 10.9986
28 1 -0.3633 0.5139 0.8899
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3634 -1.0275 -0.0005
31 1 1.8934 -0.5140 -0.8899
32 1 1.8933 -0.5139 0.8900
33 1 1.5819 1.6875 -2.0284
34 1 2.0957 3.1409 -1.1386
35 1 5.7179 2.5742 -4.0828
36 1 2.6225 0.4188 2.5299
37 1 0.9443 1.0117 2.5301
38 1 3.2591 2.5440 3.5214
39 1 2.7076 0.6598 4.9546
40 1 1.0296 1.2539 4.9546
41 1 1.7897 3.3982 5.9418
42 1 3.4675 2.8035 5.9414
43 1 1.8634 0.9394 7.3298
44 1 1.4528 -0.1638 9.1662
45 1 1.1304 2.0311 13.7172
46 1 2.2877 0.6834 13.8291
47 1 2.8789 2.3491 13.6190
48 1 2.7214 3.4120 11.2079
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001123348330.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:19:42
Heat of formation + Delta-G solvation = -16.535024 kcal
Electronic energy + Delta-G solvation = -27731.553887 eV
Core-core repulsion = 23629.364413 eV
Total energy + Delta-G solvation = -4102.189474 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 337.190 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-42.34344 -40.76547 -40.21123 -37.55304 -36.85804 -35.35796 -34.80788 -34.29021
-31.96381 -31.56006 -30.66252 -29.47853 -27.97195 -26.52980 -24.39816 -24.05420
-23.42608 -22.99594 -21.92104 -21.09147 -19.92038 -19.10231 -18.99093 -17.90711
-17.48023 -17.17263 -16.89110 -16.71815 -16.65279 -16.31928 -16.04036 -15.54050
-15.23575 -15.09138 -14.98592 -14.66929 -14.50086 -14.32712 -14.23240 -13.89568
-13.68967 -13.52543 -13.47377 -13.43083 -13.28420 -13.11981 -12.61248 -12.51996
-12.39464 -12.31550 -12.13328 -12.02157 -11.84943 -11.73215 -10.99429 -10.82736
-10.60623 -10.60143 -10.18811 -9.64871 -9.42660 -9.35664 -8.33896 -6.38407
0.52113 1.15997 1.32403 1.36989 1.43158 1.44894 1.86201 2.07386
2.31174 2.40669 2.46465 3.00890 3.34397 3.56060 3.72478 3.80055
3.90692 4.11497 4.12820 4.16592 4.18195 4.37470 4.41973 4.42089
4.48653 4.55575 4.57081 4.68736 4.70222 4.73138 4.82844 4.92678
4.95322 5.01108 5.04994 5.05751 5.37609 5.43221 5.45011 5.49024
5.68175 5.85001 5.90555 6.24307 6.25750 6.47997 6.62859 6.64744
6.78172 7.23039 7.30746 7.49391 8.82954
Molecular weight = 337.19amu
Principal moments of inertia in cm(-1)
A = 0.025685 B = 0.001603 C = 0.001550
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1089.850537 B =17465.325708 C =18056.518895
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.098 3.902
3 N -0.602 5.602
4 C 0.226 3.774
5 C -0.535 4.535
6 H 0.030 0.970
7 C 0.011 3.989
8 N -0.945 5.945
9 Si 0.946 3.054
10 H -0.278 1.278
11 H -0.274 1.274
12 H -0.239 1.239
13 C 0.493 3.507
14 O -0.586 6.586
15 C 0.060 3.940
16 N -0.692 5.692
17 C 0.060 3.940
18 C 0.128 3.872
19 N -0.709 5.709
20 C 0.593 3.407
21 O -0.596 6.596
22 C -0.318 4.318
23 C 0.089 3.911
24 N -0.327 5.327
25 N -0.363 5.363
26 C 0.085 3.915
27 C 0.130 3.870
28 H 0.063 0.937
29 H 0.042 0.958
30 H 0.094 0.906
31 H 0.070 0.930
32 H 0.099 0.901
33 H 0.047 0.953
34 H 0.014 0.986
35 H 0.268 0.732
36 H 0.081 0.919
37 H 0.130 0.870
38 H 0.344 0.656
39 H 0.059 0.941
40 H 0.102 0.898
41 H 0.059 0.941
42 H 0.052 0.948
43 H 0.416 0.584
44 H 0.220 0.780
45 H 0.093 0.907
46 H 0.098 0.902
47 H 0.116 0.884
48 H 0.204 0.796
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.286 -9.332 31.252 35.218
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C -0.024 4.024
3 N -0.334 5.334
4 C 0.104 3.896
5 C -0.574 4.574
6 H 0.048 0.952
7 C -0.187 4.187
8 N -0.585 5.585
9 Si 0.769 3.231
10 H -0.204 1.204
11 H -0.199 1.199
12 H -0.162 1.162
13 C 0.282 3.718
14 O -0.466 6.466
15 C -0.071 4.071
16 N -0.324 5.324
17 C -0.069 4.069
18 C 0.003 3.997
19 N -0.361 5.361
20 C 0.382 3.618
21 O -0.478 6.478
22 C -0.333 4.333
23 C -0.098 4.098
24 N -0.147 5.147
25 N -0.141 5.141
26 C -0.054 4.054
27 C -0.024 4.024
28 H 0.082 0.918
29 H 0.062 0.938
30 H 0.113 0.887
31 H 0.088 0.912
32 H 0.118 0.882
33 H 0.065 0.935
34 H 0.033 0.967
35 H 0.077 0.923
36 H 0.099 0.901
37 H 0.148 0.852
38 H 0.163 0.837
39 H 0.077 0.923
40 H 0.120 0.880
41 H 0.077 0.923
42 H 0.071 0.929
43 H 0.254 0.746
44 H 0.237 0.763
45 H 0.112 0.888
46 H 0.117 0.883
47 H 0.135 0.865
48 H 0.221 0.779
Dipole moment (debyes) X Y Z Total
from point charges -13.600 -8.482 32.160 35.933
hybrid contribution 1.240 0.436 -1.557 2.038
sum -12.360 -8.046 30.603 33.971
Atomic orbital electron populations
1.22162 0.93989 1.03630 1.02097 1.21790 0.95601 0.81004 1.04029
1.48062 1.64375 1.15240 1.05689 1.19248 0.94661 0.92931 0.82796
1.21590 0.97141 1.31998 1.06658 0.95191 1.25833 0.96669 0.97165
0.98992 1.70051 1.17366 1.46630 1.24499 0.85735 0.80528 0.78975
0.77838 1.20423 1.19927 1.16164 1.21352 0.77118 0.86705 0.86669
1.90652 1.47416 1.20601 1.87907 1.21821 1.04809 0.93871 0.86628
1.59964 1.32609 1.38655 1.01222 1.22073 1.03493 0.94930 0.86355
1.21058 1.00799 0.96099 0.81729 1.45423 1.68178 1.18058 1.04470
1.17521 0.75960 0.84637 0.83671 1.90775 1.49039 1.19719 1.88282
1.20210 1.22211 0.97828 0.93038 1.24531 0.95732 0.95184 0.94403
1.77153 1.23602 1.06992 1.06995 1.48785 1.47929 1.08798 1.08543
1.22393 1.05516 1.05699 0.71777 1.23340 0.94486 0.96307 0.88236
0.91757 0.93840 0.88680 0.91177 0.88242 0.93531 0.96742 0.92317
0.90136 0.85246 0.83737 0.92293 0.87990 0.92258 0.92949 0.74628
0.76331 0.88827 0.88286 0.86514 0.77888
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.26 10.24 71.98 0.74 -2.52 16
2 C 0.10 2.66 5.93 86.38 0.51 3.17 16
3 N -0.60 -23.70 2.46 -826.13 -2.03 -25.73 16
4 C 0.23 11.08 4.23 85.63 0.36 11.44 16
5 C -0.54 -31.68 9.94 25.60 0.25 -31.42 16
6 H 0.03 1.97 8.06 -2.91 -0.02 1.94 16
7 C 0.01 0.68 5.47 84.66 0.46 1.14 16
8 N -0.95 -60.20 13.96 21.45 0.30 -59.90 16
9 Si 0.95 45.11 27.47 68.60 1.88 46.99 16
10 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16
11 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16
12 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16
13 C 0.49 19.39 7.71 87.66 0.68 20.06 16
14 O -0.59 -29.61 15.78 -3.03 -0.05 -29.66 16
15 C 0.06 1.50 4.72 85.56 0.40 1.90 16
16 N -0.69 -17.52 6.13 -517.92 -3.17 -20.70 16
17 C 0.06 0.95 5.80 86.30 0.50 1.45 16
18 C 0.13 2.51 5.93 86.38 0.51 3.03 16
19 N -0.71 -11.08 5.55 -466.36 -2.59 -13.67 16
20 C 0.59 12.71 7.81 86.66 0.68 13.39 16
21 O -0.60 -18.22 16.90 -4.04 -0.07 -18.29 16
22 C -0.32 -5.25 6.13 -20.15 -0.12 -5.37 16
23 C 0.09 1.13 11.50 85.65 0.99 2.11 16
24 N -0.33 -5.07 12.50 -56.27 -0.70 -5.77 16
25 N -0.36 -4.33 3.98 -367.78 -1.46 -5.79 16
26 C 0.09 0.25 11.44 127.77 1.46 1.71 16
27 C 0.13 1.79 11.30 84.28 0.95 2.74 16
28 H 0.06 1.17 7.22 -2.39 -0.02 1.15 16
29 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16
30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16
31 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16
32 H 0.10 2.03 6.44 -2.38 -0.02 2.02 16
33 H 0.05 2.11 7.13 -2.38 -0.02 2.09 16
34 H 0.01 0.77 6.85 -2.39 -0.02 0.76 16
35 H 0.27 15.87 8.31 -92.70 -0.77 15.10 16
36 H 0.08 1.64 7.40 -2.39 -0.02 1.63 16
37 H 0.13 2.38 7.19 -2.39 -0.02 2.36 16
38 H 0.34 10.11 8.43 -89.70 -0.76 9.35 16
39 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16
40 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16
41 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16
42 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16
43 H 0.42 3.28 7.43 -92.71 -0.69 2.59 16
44 H 0.22 1.00 7.50 -2.91 -0.02 0.98 16
45 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16
46 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16
47 H 0.12 -0.22 8.14 -2.39 -0.02 -0.24 16
48 H 0.20 1.99 8.06 -2.91 -0.02 1.97 16
Total: -1.00 -92.92 404.98 -0.03 -92.95
By element:
Atomic # 1 Polarization: 17.26 SS G_CDS: -0.51 Total: 16.74 kcal
Atomic # 6 Polarization: 14.45 SS G_CDS: 8.37 Total: 22.83 kcal
Atomic # 7 Polarization: -121.91 SS G_CDS: -9.66 Total: -131.57 kcal
Atomic # 8 Polarization: -47.83 SS G_CDS: -0.12 Total: -47.95 kcal
Atomic # 14 Polarization: 45.11 SS G_CDS: 1.88 Total: 46.99 kcal
Total: -92.92 -0.03 -92.95 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001123348330.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.416 kcal
(2) G-P(sol) polarization free energy of solvation -92.923 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.507 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.028 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.951 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.535 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds