Wall clock time and date at job start Tue Mar 31 2020 20:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47703 * 2 1 4 4 C 1.46502 * 119.99690 * 269.99813 * 3 2 1 5 5 C 1.50697 * 109.47041 * 269.99812 * 4 3 2 6 6 H 1.08000 * 120.00276 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99498 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99359 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00486 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46937 * 89.99885 * 9 7 5 11 11 H 1.48498 * 109.47360 * 210.00334 * 9 7 5 12 12 H 1.48497 * 109.46977 * 330.00442 * 9 7 5 13 13 C 1.34775 * 120.00238 * 89.99270 * 3 2 1 14 14 O 1.21280 * 120.00034 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99911 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.46807 * 179.97438 * 15 13 3 17 17 C 1.46898 * 110.99459 * 179.97438 * 16 15 13 18 18 C 1.53004 * 109.46947 * 179.97438 * 17 16 15 19 19 N 1.46499 * 109.47198 * 180.02562 * 18 17 16 20 20 C 1.34777 * 119.99665 * 180.27868 * 19 18 17 21 21 O 1.21603 * 120.00257 * 359.72088 * 20 19 18 22 22 C 1.47425 * 119.99743 * 179.72398 * 20 19 18 23 23 C 1.41291 * 126.41772 * 359.68438 * 22 20 19 24 24 N 1.30442 * 108.02749 * 179.85514 * 23 22 20 25 25 N 1.39928 * 108.89515 * 0.40754 * 24 23 22 26 26 C 1.46508 * 125.75566 * 179.73766 * 25 24 23 27 27 C 1.34258 * 108.49256 * 359.73579 * 25 24 23 28 28 H 1.08998 * 109.47006 * 300.00807 * 1 2 3 29 29 H 1.09002 * 109.46638 * 60.00039 * 1 2 3 30 30 H 1.08990 * 109.47579 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47447 * 239.99032 * 2 1 3 32 32 H 1.09007 * 109.47076 * 120.00117 * 2 1 3 33 33 H 1.09006 * 109.46889 * 29.99700 * 4 3 2 34 34 H 1.09000 * 109.47133 * 149.99097 * 4 3 2 35 35 H 0.97011 * 119.99730 * 179.97438 * 8 7 5 36 36 H 1.08992 * 109.47001 * 59.99355 * 15 13 3 37 37 H 1.09001 * 109.46613 * 299.99743 * 15 13 3 38 38 H 1.00894 * 110.99641 * 303.95280 * 16 15 13 39 39 H 1.08995 * 109.47478 * 60.00426 * 17 16 15 40 40 H 1.09006 * 109.47065 * 299.99823 * 17 16 15 41 41 H 1.09009 * 109.46730 * 59.99875 * 18 17 16 42 42 H 1.08998 * 109.46846 * 300.00419 * 18 17 16 43 43 H 0.97001 * 119.99790 * 359.97438 * 19 18 17 44 44 H 1.08008 * 125.98679 * 0.02562 * 23 22 20 45 45 H 1.08998 * 109.46812 * 269.99933 * 26 25 24 46 46 H 1.08996 * 109.46938 * 29.99997 * 26 25 24 47 47 H 1.08997 * 109.47409 * 150.00432 * 26 25 24 48 48 H 1.07999 * 126.29325 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2627 2.0717 -1.2688 5 6 3.6860 1.8347 -1.7037 6 1 4.3430 1.2306 -1.0957 7 6 4.1496 2.3902 -2.8775 8 7 5.3918 2.1838 -3.2568 9 14 3.0134 3.4357 -3.9288 10 1 3.1161 4.8558 -3.5070 11 1 3.4070 3.3133 -5.3555 12 1 1.6138 2.9691 -3.7597 13 6 2.2430 2.0166 1.1672 14 8 2.6470 3.1601 1.1671 15 6 1.9922 1.3061 2.4723 16 7 2.3108 2.2060 3.5888 17 6 2.0772 1.5459 4.8801 18 6 2.4199 2.5118 6.0161 19 7 2.1874 1.8533 7.3040 20 6 2.4179 2.5194 8.4527 21 8 2.8237 3.6653 8.4202 22 6 2.1782 1.8588 9.7487 23 6 1.7047 0.5421 9.9440 24 7 1.6284 0.3269 11.2283 25 7 2.0344 1.4817 11.9062 26 6 2.0862 1.6469 13.3610 27 6 2.3687 2.4129 10.9986 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0275 -0.0005 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.5819 1.6875 -2.0284 34 1 2.0957 3.1409 -1.1386 35 1 5.7179 2.5742 -4.0828 36 1 2.6225 0.4188 2.5299 37 1 0.9443 1.0117 2.5301 38 1 3.2591 2.5440 3.5214 39 1 2.7076 0.6598 4.9546 40 1 1.0296 1.2539 4.9546 41 1 1.7897 3.3982 5.9418 42 1 3.4675 2.8035 5.9414 43 1 1.8634 0.9394 7.3298 44 1 1.4528 -0.1638 9.1662 45 1 1.1304 2.0311 13.7172 46 1 2.2877 0.6834 13.8291 47 1 2.8789 2.3491 13.6190 48 1 2.7214 3.4120 11.2079 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123348330.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:42 Heat of formation + Delta-G solvation = -16.535024 kcal Electronic energy + Delta-G solvation = -27731.553887 eV Core-core repulsion = 23629.364413 eV Total energy + Delta-G solvation = -4102.189474 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.34344 -40.76547 -40.21123 -37.55304 -36.85804 -35.35796 -34.80788 -34.29021 -31.96381 -31.56006 -30.66252 -29.47853 -27.97195 -26.52980 -24.39816 -24.05420 -23.42608 -22.99594 -21.92104 -21.09147 -19.92038 -19.10231 -18.99093 -17.90711 -17.48023 -17.17263 -16.89110 -16.71815 -16.65279 -16.31928 -16.04036 -15.54050 -15.23575 -15.09138 -14.98592 -14.66929 -14.50086 -14.32712 -14.23240 -13.89568 -13.68967 -13.52543 -13.47377 -13.43083 -13.28420 -13.11981 -12.61248 -12.51996 -12.39464 -12.31550 -12.13328 -12.02157 -11.84943 -11.73215 -10.99429 -10.82736 -10.60623 -10.60143 -10.18811 -9.64871 -9.42660 -9.35664 -8.33896 -6.38407 0.52113 1.15997 1.32403 1.36989 1.43158 1.44894 1.86201 2.07386 2.31174 2.40669 2.46465 3.00890 3.34397 3.56060 3.72478 3.80055 3.90692 4.11497 4.12820 4.16592 4.18195 4.37470 4.41973 4.42089 4.48653 4.55575 4.57081 4.68736 4.70222 4.73138 4.82844 4.92678 4.95322 5.01108 5.04994 5.05751 5.37609 5.43221 5.45011 5.49024 5.68175 5.85001 5.90555 6.24307 6.25750 6.47997 6.62859 6.64744 6.78172 7.23039 7.30746 7.49391 8.82954 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025685 B = 0.001603 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.850537 B =17465.325708 C =18056.518895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.602 5.602 4 C 0.226 3.774 5 C -0.535 4.535 6 H 0.030 0.970 7 C 0.011 3.989 8 N -0.945 5.945 9 Si 0.946 3.054 10 H -0.278 1.278 11 H -0.274 1.274 12 H -0.239 1.239 13 C 0.493 3.507 14 O -0.586 6.586 15 C 0.060 3.940 16 N -0.692 5.692 17 C 0.060 3.940 18 C 0.128 3.872 19 N -0.709 5.709 20 C 0.593 3.407 21 O -0.596 6.596 22 C -0.318 4.318 23 C 0.089 3.911 24 N -0.327 5.327 25 N -0.363 5.363 26 C 0.085 3.915 27 C 0.130 3.870 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.047 0.953 34 H 0.014 0.986 35 H 0.268 0.732 36 H 0.081 0.919 37 H 0.130 0.870 38 H 0.344 0.656 39 H 0.059 0.941 40 H 0.102 0.898 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.416 0.584 44 H 0.220 0.780 45 H 0.093 0.907 46 H 0.098 0.902 47 H 0.116 0.884 48 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.286 -9.332 31.252 35.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.334 5.334 4 C 0.104 3.896 5 C -0.574 4.574 6 H 0.048 0.952 7 C -0.187 4.187 8 N -0.585 5.585 9 Si 0.769 3.231 10 H -0.204 1.204 11 H -0.199 1.199 12 H -0.162 1.162 13 C 0.282 3.718 14 O -0.466 6.466 15 C -0.071 4.071 16 N -0.324 5.324 17 C -0.069 4.069 18 C 0.003 3.997 19 N -0.361 5.361 20 C 0.382 3.618 21 O -0.478 6.478 22 C -0.333 4.333 23 C -0.098 4.098 24 N -0.147 5.147 25 N -0.141 5.141 26 C -0.054 4.054 27 C -0.024 4.024 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.118 0.882 33 H 0.065 0.935 34 H 0.033 0.967 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.148 0.852 38 H 0.163 0.837 39 H 0.077 0.923 40 H 0.120 0.880 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.254 0.746 44 H 0.237 0.763 45 H 0.112 0.888 46 H 0.117 0.883 47 H 0.135 0.865 48 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -13.600 -8.482 32.160 35.933 hybrid contribution 1.240 0.436 -1.557 2.038 sum -12.360 -8.046 30.603 33.971 Atomic orbital electron populations 1.22162 0.93989 1.03630 1.02097 1.21790 0.95601 0.81004 1.04029 1.48062 1.64375 1.15240 1.05689 1.19248 0.94661 0.92931 0.82796 1.21590 0.97141 1.31998 1.06658 0.95191 1.25833 0.96669 0.97165 0.98992 1.70051 1.17366 1.46630 1.24499 0.85735 0.80528 0.78975 0.77838 1.20423 1.19927 1.16164 1.21352 0.77118 0.86705 0.86669 1.90652 1.47416 1.20601 1.87907 1.21821 1.04809 0.93871 0.86628 1.59964 1.32609 1.38655 1.01222 1.22073 1.03493 0.94930 0.86355 1.21058 1.00799 0.96099 0.81729 1.45423 1.68178 1.18058 1.04470 1.17521 0.75960 0.84637 0.83671 1.90775 1.49039 1.19719 1.88282 1.20210 1.22211 0.97828 0.93038 1.24531 0.95732 0.95184 0.94403 1.77153 1.23602 1.06992 1.06995 1.48785 1.47929 1.08798 1.08543 1.22393 1.05516 1.05699 0.71777 1.23340 0.94486 0.96307 0.88236 0.91757 0.93840 0.88680 0.91177 0.88242 0.93531 0.96742 0.92317 0.90136 0.85246 0.83737 0.92293 0.87990 0.92258 0.92949 0.74628 0.76331 0.88827 0.88286 0.86514 0.77888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.26 10.24 71.98 0.74 -2.52 16 2 C 0.10 2.66 5.93 86.38 0.51 3.17 16 3 N -0.60 -23.70 2.46 -826.13 -2.03 -25.73 16 4 C 0.23 11.08 4.23 85.63 0.36 11.44 16 5 C -0.54 -31.68 9.94 25.60 0.25 -31.42 16 6 H 0.03 1.97 8.06 -2.91 -0.02 1.94 16 7 C 0.01 0.68 5.47 84.66 0.46 1.14 16 8 N -0.95 -60.20 13.96 21.45 0.30 -59.90 16 9 Si 0.95 45.11 27.47 68.60 1.88 46.99 16 10 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 13 C 0.49 19.39 7.71 87.66 0.68 20.06 16 14 O -0.59 -29.61 15.78 -3.03 -0.05 -29.66 16 15 C 0.06 1.50 4.72 85.56 0.40 1.90 16 16 N -0.69 -17.52 6.13 -517.92 -3.17 -20.70 16 17 C 0.06 0.95 5.80 86.30 0.50 1.45 16 18 C 0.13 2.51 5.93 86.38 0.51 3.03 16 19 N -0.71 -11.08 5.55 -466.36 -2.59 -13.67 16 20 C 0.59 12.71 7.81 86.66 0.68 13.39 16 21 O -0.60 -18.22 16.90 -4.04 -0.07 -18.29 16 22 C -0.32 -5.25 6.13 -20.15 -0.12 -5.37 16 23 C 0.09 1.13 11.50 85.65 0.99 2.11 16 24 N -0.33 -5.07 12.50 -56.27 -0.70 -5.77 16 25 N -0.36 -4.33 3.98 -367.78 -1.46 -5.79 16 26 C 0.09 0.25 11.44 127.77 1.46 1.71 16 27 C 0.13 1.79 11.30 84.28 0.95 2.74 16 28 H 0.06 1.17 7.22 -2.39 -0.02 1.15 16 29 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 32 H 0.10 2.03 6.44 -2.38 -0.02 2.02 16 33 H 0.05 2.11 7.13 -2.38 -0.02 2.09 16 34 H 0.01 0.77 6.85 -2.39 -0.02 0.76 16 35 H 0.27 15.87 8.31 -92.70 -0.77 15.10 16 36 H 0.08 1.64 7.40 -2.39 -0.02 1.63 16 37 H 0.13 2.38 7.19 -2.39 -0.02 2.36 16 38 H 0.34 10.11 8.43 -89.70 -0.76 9.35 16 39 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 42 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.42 3.28 7.43 -92.71 -0.69 2.59 16 44 H 0.22 1.00 7.50 -2.91 -0.02 0.98 16 45 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 46 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 47 H 0.12 -0.22 8.14 -2.39 -0.02 -0.24 16 48 H 0.20 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -92.92 404.98 -0.03 -92.95 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -0.51 Total: 16.74 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: 8.37 Total: 22.83 kcal Atomic # 7 Polarization: -121.91 SS G_CDS: -9.66 Total: -131.57 kcal Atomic # 8 Polarization: -47.83 SS G_CDS: -0.12 Total: -47.95 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.88 Total: 46.99 kcal Total: -92.92 -0.03 -92.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123348330.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.416 kcal (2) G-P(sol) polarization free energy of solvation -92.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds