Wall clock time and date at job start Tue Mar 31 2020 20:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47291 * 2 1 4 4 C 1.46504 * 120.00185 * 269.99839 * 3 2 1 5 5 C 1.50698 * 109.47147 * 270.00256 * 4 3 2 6 6 H 1.07996 * 120.00192 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99799 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00104 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99836 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47104 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46767 * 119.99902 * 9 7 5 12 12 H 1.48497 * 109.47282 * 240.00044 * 9 7 5 13 13 C 1.34783 * 120.00200 * 89.99678 * 3 2 1 14 14 O 1.21282 * 119.99971 * 179.97438 * 13 3 2 15 15 C 1.50693 * 119.99607 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47029 * 179.97438 * 15 13 3 17 17 C 1.46898 * 111.00530 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.47542 * 179.97438 * 17 16 15 19 19 N 1.46501 * 109.47053 * 180.02562 * 18 17 16 20 20 C 1.34777 * 119.99769 * 180.02562 * 19 18 17 21 21 O 1.21283 * 120.00044 * 359.97438 * 20 19 18 22 22 C 1.50706 * 119.99953 * 180.02562 * 20 19 18 23 23 N 1.46494 * 109.47023 * 179.97438 * 22 20 19 24 24 C 1.34954 * 126.03475 * 124.99747 * 23 22 20 25 25 C 1.35316 * 107.74368 * 179.73518 * 24 23 22 26 26 C 1.39868 * 107.92272 * 0.02562 * 25 24 23 27 27 N 1.30837 * 108.20148 * 359.97438 * 26 25 24 28 28 H 1.08995 * 109.46950 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47093 * 300.00217 * 1 2 3 30 30 H 1.09006 * 109.46876 * 60.00070 * 1 2 3 31 31 H 1.09002 * 109.47554 * 239.99963 * 2 1 3 32 32 H 1.08999 * 109.47204 * 119.99324 * 2 1 3 33 33 H 1.09000 * 109.46895 * 30.00292 * 4 3 2 34 34 H 1.08998 * 109.47457 * 149.99363 * 4 3 2 35 35 H 0.97001 * 120.00059 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47646 * 60.00107 * 15 13 3 37 37 H 1.09001 * 109.47465 * 299.99727 * 15 13 3 38 38 H 1.00906 * 111.00157 * 303.95119 * 16 15 13 39 39 H 1.09007 * 109.46658 * 59.99672 * 17 16 15 40 40 H 1.08998 * 109.47311 * 300.00142 * 17 16 15 41 41 H 1.08993 * 109.46791 * 60.00320 * 18 17 16 42 42 H 1.08999 * 109.47034 * 299.99886 * 18 17 16 43 43 H 0.96996 * 120.00074 * 359.97438 * 19 18 17 44 44 H 1.08999 * 109.46800 * 59.99220 * 22 20 19 45 45 H 1.09007 * 109.46625 * 299.99540 * 22 20 19 46 46 H 1.07999 * 126.12395 * 359.71501 * 24 23 22 47 47 H 1.07999 * 126.03437 * 179.97438 * 25 24 23 48 48 H 1.08001 * 125.89990 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1492 2.3896 -2.8780 8 7 3.3489 3.1249 -3.6186 9 14 5.9136 2.0966 -3.4168 10 1 6.6012 1.2413 -2.4163 11 1 5.9214 1.4169 -4.7372 12 1 6.6206 3.3979 -3.5257 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9923 1.3060 2.4722 16 7 2.3109 2.2059 3.5888 17 6 2.0774 1.5458 4.8802 18 6 2.4201 2.5117 6.0162 19 7 2.1877 1.8531 7.3040 20 6 2.4231 2.5174 8.4528 21 8 2.8277 3.6603 8.4204 22 6 2.1847 1.8397 9.7776 23 7 2.5127 2.7646 10.8652 24 6 1.6931 3.1257 11.8747 25 6 2.3709 3.9869 12.6684 26 6 3.6483 4.1584 12.1251 27 7 3.7345 3.4261 11.0443 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.5818 1.6878 -2.0284 34 1 2.0956 3.1410 -1.1385 35 1 3.6747 3.5148 -4.4449 36 1 2.6228 0.4188 2.5299 37 1 0.9444 1.0115 2.5302 38 1 3.2592 2.5440 3.5215 39 1 2.7079 0.6597 4.9545 40 1 1.0299 1.2536 4.9548 41 1 1.7899 3.3979 5.9420 42 1 3.4677 2.8034 5.9415 43 1 1.8638 0.9392 7.3299 44 1 2.8157 0.9541 9.8514 45 1 1.1374 1.5469 9.8526 46 1 0.6779 2.7880 12.0224 47 1 1.9921 4.4590 13.5628 48 1 4.4287 4.7869 12.5281 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123514874.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:15 Heat of formation + Delta-G solvation = 21.929466 kcal Electronic energy + Delta-G solvation = -27734.316544 eV Core-core repulsion = 23633.795016 eV Total energy + Delta-G solvation = -4100.521528 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.50199 -39.86620 -39.15794 -36.65474 -35.29969 -34.46526 -33.70737 -32.79852 -30.47925 -30.18744 -29.94918 -28.07332 -27.04396 -25.16433 -23.05119 -22.67862 -22.14392 -21.77335 -21.40333 -20.59391 -18.51847 -17.79691 -17.64482 -16.57440 -16.57199 -16.28327 -16.17930 -15.84282 -15.50101 -15.06194 -14.68822 -14.41210 -14.32346 -13.91998 -13.84419 -13.63255 -13.41430 -13.35595 -13.27658 -13.09386 -12.70197 -12.45883 -12.22017 -12.01347 -11.81303 -11.65813 -11.47631 -11.19575 -10.92448 -10.90984 -10.76216 -10.55977 -10.48088 -10.14212 -9.66806 -9.62820 -9.46826 -8.97568 -8.92409 -8.46492 -8.44604 -7.67028 -6.05230 -4.10091 1.53124 1.99859 2.16831 2.60872 2.68742 3.28655 3.35793 3.38375 3.43207 3.71773 4.03041 4.18008 4.34814 4.43989 4.45192 4.48345 4.63650 4.74482 4.82606 5.04951 5.15323 5.21700 5.22804 5.29393 5.39687 5.44376 5.45062 5.61285 5.62695 5.69528 5.70015 5.76991 5.94996 5.99167 6.19942 6.32998 6.44608 6.57624 6.71707 7.01301 7.09321 7.26036 7.41531 7.45398 7.54472 7.77848 7.91392 8.22741 8.41668 8.89682 9.09810 9.55201 11.02796 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019986 B = 0.001606 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.633340 B =17426.479645 C =18347.815907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.282 1.282 13 C 0.503 3.497 14 O -0.527 6.527 15 C 0.043 3.957 16 N -0.670 5.670 17 C 0.051 3.949 18 C 0.121 3.879 19 N -0.728 5.728 20 C 0.497 3.503 21 O -0.504 6.504 22 C 0.117 3.883 23 N -0.366 5.366 24 C 0.050 3.950 25 C -0.270 4.270 26 C 0.040 3.960 27 N -0.267 5.267 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.043 0.957 35 H 0.263 0.737 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.356 0.644 39 H 0.035 0.965 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.400 0.600 44 H 0.114 0.886 45 H 0.125 0.875 46 H 0.174 0.826 47 H 0.148 0.852 48 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.187 -10.267 29.019 31.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.289 3.711 14 O -0.403 6.403 15 C -0.089 4.089 16 N -0.304 5.304 17 C -0.079 4.079 18 C -0.003 4.003 19 N -0.382 5.382 20 C 0.280 3.720 21 O -0.377 6.377 22 C -0.009 4.009 23 N -0.149 5.149 24 C -0.095 4.095 25 C -0.299 4.299 26 C -0.147 4.147 27 N -0.087 5.087 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.176 0.824 39 H 0.053 0.947 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.234 0.766 44 H 0.132 0.868 45 H 0.143 0.857 46 H 0.191 0.809 47 H 0.166 0.834 48 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -7.575 -8.832 27.689 30.035 hybrid contribution 0.878 -1.091 0.213 1.417 sum -6.697 -9.924 27.902 30.362 Atomic orbital electron populations 1.22228 0.96795 1.01334 1.02422 1.21406 0.93513 0.84310 1.02546 1.48254 1.64009 1.13181 1.07701 1.19263 0.96201 0.93705 0.78063 1.21468 0.96958 1.31893 1.06231 0.92505 1.24939 0.97834 0.94924 0.96422 1.69942 1.35574 1.33462 1.14281 0.86449 0.84660 0.78060 0.78266 1.19886 1.20981 1.20850 1.20133 0.79049 0.87105 0.84854 1.90692 1.45020 1.17697 1.86885 1.21899 1.02362 0.94217 0.90431 1.59957 1.33192 1.37591 0.99611 1.22062 1.01653 0.95022 0.89127 1.21287 1.02437 0.96210 0.80330 1.45794 1.69031 1.17631 1.05748 1.20509 0.78818 0.87307 0.85361 1.90838 1.42764 1.17197 1.86861 1.21440 1.04010 0.91550 0.83853 1.48073 1.10621 1.36280 1.19922 1.22543 0.97483 0.99327 0.90102 1.21515 0.95771 1.07356 1.05286 1.23960 0.98107 0.99221 0.93423 1.77523 1.01666 1.11264 1.18277 0.92234 0.93055 0.91967 0.89947 0.91982 0.95036 0.93852 0.92764 0.92794 0.88656 0.82417 0.94662 0.90331 0.90045 0.91103 0.76582 0.86767 0.85673 0.80911 0.83440 0.80009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.11 1.62 5.93 -4.04 -0.02 1.59 16 3 N -0.60 -12.29 2.46 -175.06 -0.43 -12.72 16 4 C 0.25 6.40 5.16 -5.19 -0.03 6.38 16 5 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 9 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.50 10.17 7.71 -10.99 -0.08 10.09 16 14 O -0.53 -13.22 15.78 5.56 0.09 -13.13 16 15 C 0.04 0.60 4.72 -4.98 -0.02 0.58 16 16 N -0.67 -8.92 6.13 -115.06 -0.70 -9.63 16 17 C 0.05 0.45 5.80 -3.82 -0.02 0.43 16 18 C 0.12 1.16 5.93 -4.04 -0.02 1.14 16 19 N -0.73 -5.00 5.56 -60.29 -0.33 -5.34 16 20 C 0.50 4.67 7.86 -10.98 -0.09 4.59 16 21 O -0.50 -7.64 15.72 5.56 0.09 -7.56 16 22 C 0.12 0.65 6.99 -5.19 -0.04 0.62 16 23 N -0.37 -3.36 3.39 -62.54 -0.21 -3.57 16 24 C 0.05 0.36 11.45 -17.22 -0.20 0.16 16 25 C -0.27 -2.09 10.80 -40.01 -0.43 -2.53 16 26 C 0.04 0.39 12.03 -17.37 -0.21 0.18 16 27 N -0.27 -3.27 11.66 30.62 0.36 -2.91 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.61 7.22 -51.93 -0.38 0.24 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 32 H 0.06 0.76 6.44 -51.93 -0.33 0.42 16 33 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 34 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.05 0.65 7.40 -51.93 -0.38 0.26 16 37 H 0.10 1.13 7.19 -51.93 -0.37 0.75 16 38 H 0.36 5.16 8.43 -39.29 -0.33 4.83 16 39 H 0.04 0.26 8.14 -51.92 -0.42 -0.16 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.40 1.20 8.47 -40.82 -0.35 0.86 16 44 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.13 0.17 8.07 -51.92 -0.42 -0.25 16 46 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 47 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 48 H 0.18 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 408.38 15.07 6.15 6.15 Total: -1.00 -40.47 408.38 -8.05 -48.52 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.56 Total: 1.26 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: -1.21 Total: 7.90 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.59 Total: -60.01 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: 0.17 Total: -20.69 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -40.47 -8.05 -48.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123514874.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.447 kcal (2) G-P(sol) polarization free energy of solvation -40.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds