Wall clock time and date at job start Tue Mar 31 2020 20:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47291 * 2 1 4 4 C 1.46504 * 120.00185 * 269.99839 * 3 2 1 5 5 C 1.50698 * 109.47147 * 270.00256 * 4 3 2 6 6 H 1.07996 * 120.00192 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99799 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00104 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99836 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47104 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46767 * 119.99902 * 9 7 5 12 12 H 1.48497 * 109.47282 * 240.00044 * 9 7 5 13 13 C 1.34783 * 120.00200 * 89.99678 * 3 2 1 14 14 O 1.21282 * 119.99971 * 179.97438 * 13 3 2 15 15 C 1.50693 * 119.99607 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47029 * 179.97438 * 15 13 3 17 17 C 1.46898 * 111.00530 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.47542 * 179.97438 * 17 16 15 19 19 N 1.46501 * 109.47053 * 180.02562 * 18 17 16 20 20 C 1.34777 * 119.99769 * 180.02562 * 19 18 17 21 21 O 1.21283 * 120.00044 * 359.97438 * 20 19 18 22 22 C 1.50706 * 119.99953 * 180.02562 * 20 19 18 23 23 N 1.46494 * 109.47023 * 179.97438 * 22 20 19 24 24 C 1.34954 * 126.03475 * 124.99747 * 23 22 20 25 25 C 1.35316 * 107.74368 * 179.73518 * 24 23 22 26 26 C 1.39868 * 107.92272 * 0.02562 * 25 24 23 27 27 N 1.30837 * 108.20148 * 359.97438 * 26 25 24 28 28 H 1.08995 * 109.46950 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47093 * 300.00217 * 1 2 3 30 30 H 1.09006 * 109.46876 * 60.00070 * 1 2 3 31 31 H 1.09002 * 109.47554 * 239.99963 * 2 1 3 32 32 H 1.08999 * 109.47204 * 119.99324 * 2 1 3 33 33 H 1.09000 * 109.46895 * 30.00292 * 4 3 2 34 34 H 1.08998 * 109.47457 * 149.99363 * 4 3 2 35 35 H 0.97001 * 120.00059 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47646 * 60.00107 * 15 13 3 37 37 H 1.09001 * 109.47465 * 299.99727 * 15 13 3 38 38 H 1.00906 * 111.00157 * 303.95119 * 16 15 13 39 39 H 1.09007 * 109.46658 * 59.99672 * 17 16 15 40 40 H 1.08998 * 109.47311 * 300.00142 * 17 16 15 41 41 H 1.08993 * 109.46791 * 60.00320 * 18 17 16 42 42 H 1.08999 * 109.47034 * 299.99886 * 18 17 16 43 43 H 0.96996 * 120.00074 * 359.97438 * 19 18 17 44 44 H 1.08999 * 109.46800 * 59.99220 * 22 20 19 45 45 H 1.09007 * 109.46625 * 299.99540 * 22 20 19 46 46 H 1.07999 * 126.12395 * 359.71501 * 24 23 22 47 47 H 1.07999 * 126.03437 * 179.97438 * 25 24 23 48 48 H 1.08001 * 125.89990 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1492 2.3896 -2.8780 8 7 3.3489 3.1249 -3.6186 9 14 5.9136 2.0966 -3.4168 10 1 6.6012 1.2413 -2.4163 11 1 5.9214 1.4169 -4.7372 12 1 6.6206 3.3979 -3.5257 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9923 1.3060 2.4722 16 7 2.3109 2.2059 3.5888 17 6 2.0774 1.5458 4.8802 18 6 2.4201 2.5117 6.0162 19 7 2.1877 1.8531 7.3040 20 6 2.4231 2.5174 8.4528 21 8 2.8277 3.6603 8.4204 22 6 2.1847 1.8397 9.7776 23 7 2.5127 2.7646 10.8652 24 6 1.6931 3.1257 11.8747 25 6 2.3709 3.9869 12.6684 26 6 3.6483 4.1584 12.1251 27 7 3.7345 3.4261 11.0443 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.5818 1.6878 -2.0284 34 1 2.0956 3.1410 -1.1385 35 1 3.6747 3.5148 -4.4449 36 1 2.6228 0.4188 2.5299 37 1 0.9444 1.0115 2.5302 38 1 3.2592 2.5440 3.5215 39 1 2.7079 0.6597 4.9545 40 1 1.0299 1.2536 4.9548 41 1 1.7899 3.3979 5.9420 42 1 3.4677 2.8034 5.9415 43 1 1.8638 0.9392 7.3299 44 1 2.8157 0.9541 9.8514 45 1 1.1374 1.5469 9.8526 46 1 0.6779 2.7880 12.0224 47 1 1.9921 4.4590 13.5628 48 1 4.4287 4.7869 12.5281 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123514874.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:14 Heat of formation + Delta-G solvation = -11.574191 kcal Electronic energy + Delta-G solvation = -27735.769372 eV Core-core repulsion = 23633.795016 eV Total energy + Delta-G solvation = -4101.974356 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.07957 -40.76642 -40.53709 -37.62323 -36.85925 -35.41549 -34.86490 -34.27511 -31.67385 -31.13543 -30.81238 -29.35101 -28.17604 -26.45284 -24.64430 -23.86279 -23.20334 -22.48095 -21.93855 -21.24122 -19.97390 -18.65833 -18.48265 -18.23756 -17.78874 -17.45937 -17.20833 -16.76816 -16.65558 -16.27645 -15.89309 -15.42921 -15.28410 -14.90425 -14.68788 -14.64009 -14.60268 -14.41423 -14.17803 -14.12776 -13.63185 -13.52625 -13.45934 -13.24148 -13.13740 -13.03840 -12.68216 -12.65796 -12.48201 -12.41116 -12.15162 -11.84966 -11.68976 -11.55786 -11.24838 -10.66227 -10.57942 -10.32104 -10.20133 -9.49102 -9.45373 -9.39802 -8.23317 -6.38408 0.97076 1.34528 1.37465 1.48651 1.49951 1.53360 1.87558 2.00242 2.02937 2.30957 2.44612 3.06058 3.26642 3.65434 3.72316 3.78328 3.87775 4.07405 4.10359 4.13248 4.18392 4.26977 4.34924 4.39438 4.46744 4.52041 4.69102 4.72919 4.87324 4.90453 4.93562 4.95783 5.01777 5.07166 5.17644 5.22504 5.29110 5.42350 5.58062 5.73965 5.82370 5.92665 6.06265 6.12771 6.20812 6.49293 6.70604 6.80996 6.84701 7.18787 7.28291 7.53548 8.83739 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019986 B = 0.001606 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.633340 B =17426.479645 C =18347.815907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.262 3.738 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.268 1.268 12 H -0.284 1.284 13 C 0.490 3.510 14 O -0.590 6.590 15 C 0.062 3.938 16 N -0.696 5.696 17 C 0.062 3.938 18 C 0.127 3.873 19 N -0.706 5.706 20 C 0.491 3.509 21 O -0.572 6.572 22 C 0.117 3.883 23 N -0.376 5.376 24 C 0.057 3.943 25 C -0.287 4.287 26 C 0.024 3.976 27 N -0.329 5.329 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.021 0.979 34 H -0.007 1.007 35 H 0.266 0.734 36 H 0.086 0.914 37 H 0.127 0.873 38 H 0.344 0.656 39 H 0.062 0.938 40 H 0.104 0.896 41 H 0.054 0.946 42 H 0.046 0.954 43 H 0.424 0.576 44 H 0.140 0.860 45 H 0.177 0.823 46 H 0.218 0.782 47 H 0.168 0.832 48 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.459 -14.167 31.066 35.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.141 3.859 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.190 1.190 11 H -0.193 1.193 12 H -0.210 1.210 13 C 0.278 3.722 14 O -0.471 6.471 15 C -0.069 4.069 16 N -0.329 5.329 17 C -0.066 4.066 18 C 0.002 3.998 19 N -0.361 5.361 20 C 0.277 3.723 21 O -0.450 6.450 22 C -0.007 4.007 23 N -0.159 5.159 24 C -0.088 4.088 25 C -0.316 4.316 26 C -0.163 4.163 27 N -0.150 5.150 28 H 0.115 0.885 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.039 0.961 34 H 0.011 0.989 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.145 0.855 38 H 0.162 0.838 39 H 0.080 0.920 40 H 0.122 0.878 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.262 0.738 44 H 0.158 0.842 45 H 0.195 0.805 46 H 0.235 0.765 47 H 0.186 0.814 48 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -8.897 -12.851 29.756 33.612 hybrid contribution 1.198 0.122 -0.409 1.272 sum -7.699 -12.729 29.347 32.903 Atomic orbital electron populations 1.22162 0.94591 1.03522 1.01663 1.21771 0.95299 0.81186 1.04035 1.48288 1.64077 1.15180 1.06096 1.18663 0.95205 0.91419 0.80646 1.21762 0.97939 1.31903 1.06450 0.92727 1.25882 1.02402 0.94508 0.96519 1.70066 1.37710 1.34308 1.14780 0.85358 0.78986 0.77930 0.78452 1.18993 1.19347 1.21007 1.21388 0.77382 0.86678 0.86715 1.90657 1.47739 1.20724 1.87956 1.21807 1.04740 0.93881 0.86491 1.59938 1.32632 1.38902 1.01381 1.22067 1.03621 0.94811 0.86147 1.21022 1.00383 0.96153 0.82210 1.45559 1.67921 1.18416 1.04233 1.21321 0.77313 0.86607 0.87068 1.90818 1.45963 1.20345 1.87874 1.21847 1.07600 0.90837 0.80465 1.48361 1.10045 1.36502 1.20999 1.23297 0.98723 0.98001 0.88761 1.21895 0.95208 1.08106 1.06424 1.24374 0.99588 0.99099 0.93200 1.77421 1.04313 1.13389 1.19858 0.88463 0.91887 0.94708 0.91192 0.87726 0.96125 0.98937 0.92465 0.89666 0.85505 0.83787 0.91999 0.87810 0.92749 0.93583 0.73769 0.84243 0.80532 0.76518 0.81421 0.78911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 10.24 71.98 0.74 -2.89 16 2 C 0.10 2.79 5.93 86.38 0.51 3.30 16 3 N -0.60 -24.96 2.46 -826.15 -2.03 -26.99 16 4 C 0.26 14.29 5.16 85.63 0.44 14.73 16 5 C -0.54 -31.46 9.39 25.60 0.24 -31.22 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.33 5.46 84.65 0.46 0.80 16 8 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 9 Si 0.97 45.37 29.54 68.60 2.03 47.39 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 13 C 0.49 19.85 7.71 87.65 0.68 20.52 16 14 O -0.59 -31.06 15.78 -3.04 -0.05 -31.11 16 15 C 0.06 1.54 4.72 85.55 0.40 1.95 16 16 N -0.70 -17.52 6.13 -517.94 -3.17 -20.69 16 17 C 0.06 0.90 5.80 86.30 0.50 1.40 16 18 C 0.13 2.35 5.93 86.38 0.51 2.87 16 19 N -0.71 -8.13 5.56 -463.06 -2.57 -10.70 16 20 C 0.49 8.67 7.86 87.66 0.69 9.36 16 21 O -0.57 -18.04 15.72 -3.04 -0.05 -18.08 16 22 C 0.12 0.94 6.99 85.64 0.60 1.54 16 23 N -0.38 -6.31 3.39 -351.79 -1.19 -7.50 16 24 C 0.06 0.66 11.45 83.54 0.96 1.62 16 25 C -0.29 -4.14 10.80 21.99 0.24 -3.90 16 26 C 0.02 0.47 12.03 85.24 1.02 1.49 16 27 N -0.33 -8.23 11.66 -57.02 -0.66 -8.89 16 28 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.06 1.28 7.22 -2.38 -0.02 1.26 16 30 H 0.03 0.96 8.14 -2.38 -0.02 0.95 16 31 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 32 H 0.10 2.06 6.44 -2.39 -0.02 2.05 16 33 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 34 H -0.01 -0.48 7.42 -2.39 -0.02 -0.50 16 35 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 36 H 0.09 1.62 7.40 -2.39 -0.02 1.60 16 37 H 0.13 2.37 7.19 -2.39 -0.02 2.36 16 38 H 0.34 10.05 8.43 -89.69 -0.76 9.30 16 39 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 40 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.42 0.77 8.47 -92.71 -0.79 -0.02 16 44 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.18 -0.48 8.07 -2.38 -0.02 -0.50 16 46 H 0.22 0.29 8.06 -2.91 -0.02 0.27 16 47 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 48 H 0.19 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -98.96 408.38 0.01 -98.94 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -0.56 Total: 12.76 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: 7.99 Total: 21.56 kcal Atomic # 7 Polarization: -122.12 SS G_CDS: -9.35 Total: -131.46 kcal Atomic # 8 Polarization: -49.09 SS G_CDS: -0.10 Total: -49.19 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -98.96 0.01 -98.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123514874.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.370 kcal (2) G-P(sol) polarization free energy of solvation -98.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds