Wall clock time and date at job start Tue Mar 31 2020 20:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47703 * 2 1 4 4 C 1.46502 * 119.99690 * 269.99813 * 3 2 1 5 5 C 1.50697 * 109.47041 * 269.99812 * 4 3 2 6 6 H 1.08000 * 120.00276 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99498 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00405 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99569 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47265 * 89.99772 * 9 7 5 11 11 H 1.48501 * 109.46713 * 209.99799 * 9 7 5 12 12 H 1.48498 * 109.47011 * 329.99602 * 9 7 5 13 13 C 1.34775 * 120.00238 * 89.99270 * 3 2 1 14 14 O 1.21280 * 120.00034 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99911 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.46807 * 179.97438 * 15 13 3 17 17 C 1.46898 * 110.99459 * 179.97438 * 16 15 13 18 18 C 1.53004 * 109.46947 * 179.97438 * 17 16 15 19 19 N 1.46499 * 109.47198 * 180.02562 * 18 17 16 20 20 C 1.34777 * 119.99665 * 180.27868 * 19 18 17 21 21 O 1.21573 * 120.00276 * 359.72080 * 20 19 18 22 22 C 1.47716 * 119.99706 * 179.72381 * 20 19 18 23 23 C 1.41496 * 126.51780 * 179.97438 * 22 20 19 24 24 C 1.35357 * 105.50373 * 180.02562 * 23 22 20 25 25 C 1.50708 * 126.38534 * 180.02562 * 24 23 22 26 26 N 1.35033 * 107.23150 * 0.02562 * 24 23 22 27 27 H 0.96994 * 124.88746 * 179.97438 * 26 24 23 28 28 N 1.28474 * 110.22731 * 359.72900 * 26 24 23 29 29 H 1.08990 * 109.47579 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47006 * 300.00807 * 1 2 3 31 31 H 1.09002 * 109.46638 * 60.00039 * 1 2 3 32 32 H 1.09002 * 109.47447 * 239.99032 * 2 1 3 33 33 H 1.09007 * 109.47076 * 120.00117 * 2 1 3 34 34 H 1.09006 * 109.46889 * 29.99700 * 4 3 2 35 35 H 1.09000 * 109.47133 * 149.99097 * 4 3 2 36 36 H 0.97002 * 119.99949 * 179.97438 * 8 7 5 37 37 H 1.08992 * 109.47001 * 59.99355 * 15 13 3 38 38 H 1.09001 * 109.46613 * 299.99743 * 15 13 3 39 39 H 1.00894 * 110.99641 * 303.95280 * 16 15 13 40 40 H 1.08995 * 109.47478 * 60.00426 * 17 16 15 41 41 H 1.09006 * 109.47065 * 299.99823 * 17 16 15 42 42 H 1.09009 * 109.46730 * 59.99875 * 18 17 16 43 43 H 1.08998 * 109.46846 * 300.00419 * 18 17 16 44 44 H 0.97001 * 119.99790 * 359.97438 * 19 18 17 45 45 H 1.08003 * 127.24742 * 0.02562 * 23 22 20 46 46 H 1.08993 * 109.47323 * 90.00332 * 25 24 23 47 47 H 1.09002 * 109.46598 * 209.99761 * 25 24 23 48 48 H 1.08999 * 109.46751 * 329.99755 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2627 2.0717 -1.2688 5 6 3.6860 1.8347 -1.7037 6 1 4.3430 1.2306 -1.0957 7 6 4.1496 2.3902 -2.8775 8 7 3.3496 3.1263 -3.6177 9 14 5.9136 2.0959 -3.4170 10 1 5.9762 0.8753 -4.2605 11 1 6.3932 3.2634 -4.1994 12 1 6.7737 1.9150 -2.2201 13 6 2.2430 2.0166 1.1672 14 8 2.6470 3.1601 1.1671 15 6 1.9922 1.3061 2.4723 16 7 2.3108 2.2060 3.5888 17 6 2.0772 1.5459 4.8801 18 6 2.4199 2.5118 6.0161 19 7 2.1874 1.8533 7.3040 20 6 2.4179 2.5194 8.4527 21 8 2.8236 3.6650 8.4202 22 6 2.1777 1.8575 9.7512 23 6 2.3726 2.4232 11.0335 24 6 2.0261 1.4543 11.9128 25 6 2.0563 1.5587 13.4160 26 7 1.6483 0.3766 11.1922 27 1 1.3492 -0.4656 11.5690 28 7 1.7371 0.6290 9.9357 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5140 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.5819 1.6875 -2.0284 35 1 2.0957 3.1409 -1.1386 36 1 3.6760 3.5173 -4.4432 37 1 2.6225 0.4188 2.5299 38 1 0.9443 1.0117 2.5301 39 1 3.2591 2.5440 3.5214 40 1 2.7076 0.6598 4.9546 41 1 1.0296 1.2539 4.9546 42 1 1.7897 3.3982 5.9418 43 1 3.4675 2.8035 5.9414 44 1 1.8634 0.9394 7.3298 45 1 2.7240 3.4185 11.2624 46 1 1.0947 1.9264 13.7740 47 1 2.2518 0.5758 13.8446 48 1 2.8442 2.2494 13.7164 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001124229084.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:47 Heat of formation + Delta-G solvation = 2.026605 kcal Electronic energy + Delta-G solvation = -27698.136603 eV Core-core repulsion = 23596.752021 eV Total energy + Delta-G solvation = -4101.384581 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.12305 -39.61331 -39.08790 -36.51900 -35.23654 -34.36126 -33.23756 -32.76205 -32.32074 -30.11776 -29.69853 -27.67017 -27.29662 -25.56405 -24.00595 -22.99533 -22.26579 -22.06020 -21.69728 -20.28082 -18.42400 -18.14418 -17.27942 -16.52490 -16.45067 -16.28771 -16.19822 -16.04095 -15.45437 -15.13337 -14.49343 -14.31398 -14.25522 -14.07487 -13.78654 -13.56829 -13.50887 -13.36732 -13.22580 -13.17407 -12.80140 -12.39920 -12.17508 -11.96546 -11.73498 -11.56969 -11.41796 -11.32674 -11.15088 -10.88965 -10.72613 -10.51061 -10.42325 -10.10778 -9.86032 -9.60963 -9.42295 -9.26899 -8.91089 -8.41311 -8.37878 -7.62442 -6.01946 -4.06754 1.17361 1.65393 2.33491 2.83733 3.14753 3.31197 3.38059 3.41210 3.48304 3.79588 4.02682 4.16145 4.39808 4.46028 4.50482 4.71305 4.88563 4.91471 5.01693 5.11833 5.14215 5.25086 5.27904 5.28535 5.32603 5.44421 5.47154 5.52003 5.66857 5.74493 5.80299 5.83943 5.93378 6.03161 6.15322 6.24417 6.47782 6.49497 6.80210 7.13002 7.16127 7.35516 7.45051 7.49403 7.58794 7.94762 7.96213 8.26368 8.46598 8.93090 9.14826 9.58392 11.06020 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021801 B = 0.001611 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.023383 B =17371.419608 C =18020.695408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.504 3.496 14 O -0.527 6.527 15 C 0.043 3.957 16 N -0.669 5.669 17 C 0.051 3.949 18 C 0.119 3.881 19 N -0.716 5.716 20 C 0.603 3.397 21 O -0.527 6.527 22 C -0.008 4.008 23 C -0.177 4.177 24 C 0.013 3.987 25 C -0.086 4.086 26 N -0.381 5.381 27 H 0.445 0.555 28 N -0.260 5.260 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.054 0.946 38 H 0.095 0.905 39 H 0.355 0.645 40 H 0.035 0.965 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.406 0.594 45 H 0.164 0.836 46 H 0.080 0.920 47 H 0.071 0.929 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.664 -11.273 31.811 34.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.566 4.566 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.289 3.711 14 O -0.403 6.403 15 C -0.089 4.089 16 N -0.303 5.303 17 C -0.079 4.079 18 C -0.004 4.004 19 N -0.368 5.368 20 C 0.387 3.613 21 O -0.401 6.401 22 C -0.170 4.170 23 C -0.205 4.205 24 C -0.113 4.113 25 C -0.144 4.144 26 N -0.096 5.096 27 H 0.289 0.711 28 N -0.096 5.096 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.175 0.825 40 H 0.054 0.946 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.240 0.760 45 H 0.181 0.819 46 H 0.099 0.901 47 H 0.090 0.910 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.077 -10.284 30.934 33.358 hybrid contribution 1.559 -1.179 0.201 1.965 sum -5.518 -11.464 31.135 33.634 Atomic orbital electron populations 1.22225 0.96810 1.01324 1.02427 1.21404 0.93512 0.84324 1.02532 1.48248 1.64055 1.13183 1.07701 1.19253 0.96143 0.93711 0.78083 1.21440 0.96984 1.31885 1.06252 0.92559 1.24934 0.97804 0.94919 0.96427 1.69933 1.35662 1.33377 1.14323 0.86505 0.84741 0.77645 0.78558 1.20700 1.21078 1.19957 1.20144 0.78993 0.87100 0.84853 1.90686 1.45042 1.17669 1.86895 1.21901 1.02387 0.94238 0.90418 1.59959 1.33109 1.37581 0.99609 1.22067 1.01774 0.95070 0.89031 1.21325 1.02463 0.96277 0.80374 1.45722 1.67828 1.17810 1.05449 1.16833 0.77616 0.85117 0.81748 1.90835 1.45604 1.16838 1.86810 1.21936 1.07679 0.91988 0.95353 1.21561 1.07760 1.01262 0.89949 1.21493 1.04904 0.88614 0.96268 1.20375 1.04032 1.03587 0.86421 1.43306 1.48779 1.14269 1.03198 0.71069 1.73524 1.19033 1.17692 0.99348 0.92258 0.93015 0.91993 0.89988 0.91958 0.95076 0.93846 0.92734 0.92819 0.88660 0.82471 0.94639 0.90285 0.89819 0.90961 0.75952 0.81857 0.90125 0.91017 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.11 1.67 5.93 -4.04 -0.02 1.65 16 3 N -0.60 -12.55 2.46 -175.05 -0.43 -12.98 16 4 C 0.25 6.49 5.16 -5.19 -0.03 6.47 16 5 C -0.53 -15.01 9.39 -34.44 -0.32 -15.33 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 9 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.50 10.43 7.71 -10.98 -0.08 10.34 16 14 O -0.53 -13.41 15.78 5.56 0.09 -13.32 16 15 C 0.04 0.63 4.72 -4.97 -0.02 0.60 16 16 N -0.67 -9.43 6.13 -115.05 -0.70 -10.13 16 17 C 0.05 0.52 5.80 -3.82 -0.02 0.49 16 18 C 0.12 1.31 5.93 -4.04 -0.02 1.29 16 19 N -0.72 -7.23 5.55 -61.29 -0.34 -7.57 16 20 C 0.60 7.41 7.83 -12.39 -0.10 7.31 16 21 O -0.53 -8.26 16.93 5.30 0.09 -8.17 16 22 C -0.01 -0.09 7.13 -82.77 -0.59 -0.68 16 23 C -0.18 -1.54 10.73 -39.37 -0.42 -1.96 16 24 C 0.01 0.07 7.23 -82.21 -0.59 -0.52 16 25 C -0.09 -0.17 10.44 36.01 0.38 0.21 16 26 N -0.38 -2.08 6.83 33.50 0.23 -1.86 16 27 H 0.44 0.76 8.96 -190.44 -1.71 -0.94 16 28 N -0.26 -2.22 11.92 33.42 0.40 -1.82 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.65 7.22 -51.93 -0.38 0.27 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.34 8.07 -51.93 -0.42 0.93 16 33 H 0.06 0.80 6.44 -51.93 -0.33 0.46 16 34 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 35 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.05 0.69 7.40 -51.93 -0.38 0.30 16 38 H 0.10 1.21 7.19 -51.93 -0.37 0.83 16 39 H 0.36 5.34 8.43 -39.29 -0.33 5.01 16 40 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.08 1.05 8.14 -51.92 -0.42 0.62 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.41 3.27 8.20 -40.82 -0.33 2.93 16 45 H 0.16 1.31 8.06 -52.48 -0.42 0.88 16 46 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 47 H 0.07 0.03 8.14 -51.93 -0.42 -0.40 16 48 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 LS Contribution 408.29 15.07 6.15 6.15 Total: -1.00 -37.77 408.29 -9.21 -46.99 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -8.84 Total: 2.08 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: -1.57 Total: 9.68 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.11 Total: -60.41 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: 0.18 Total: -21.49 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -37.77 -9.21 -46.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124229084.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.013 kcal (2) G-P(sol) polarization free energy of solvation -37.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds