Wall clock time and date at job start Tue Mar 31 2020 20:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47703 * 2 1 4 4 C 1.46502 * 119.99690 * 269.99813 * 3 2 1 5 5 C 1.50697 * 109.47041 * 269.99812 * 4 3 2 6 6 H 1.08000 * 120.00276 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99498 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00405 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99569 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47265 * 89.99772 * 9 7 5 11 11 H 1.48501 * 109.46713 * 209.99799 * 9 7 5 12 12 H 1.48498 * 109.47011 * 329.99602 * 9 7 5 13 13 C 1.34775 * 120.00238 * 89.99270 * 3 2 1 14 14 O 1.21280 * 120.00034 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99911 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.46807 * 179.97438 * 15 13 3 17 17 C 1.46898 * 110.99459 * 179.97438 * 16 15 13 18 18 C 1.53004 * 109.46947 * 179.97438 * 17 16 15 19 19 N 1.46499 * 109.47198 * 180.02562 * 18 17 16 20 20 C 1.34777 * 119.99665 * 180.27868 * 19 18 17 21 21 O 1.21573 * 120.00276 * 359.72080 * 20 19 18 22 22 C 1.47716 * 119.99706 * 179.72381 * 20 19 18 23 23 C 1.41496 * 126.51780 * 179.97438 * 22 20 19 24 24 C 1.35357 * 105.50373 * 180.02562 * 23 22 20 25 25 C 1.50708 * 126.38534 * 180.02562 * 24 23 22 26 26 N 1.35033 * 107.23150 * 0.02562 * 24 23 22 27 27 H 0.96994 * 124.88746 * 179.97438 * 26 24 23 28 28 N 1.28474 * 110.22731 * 359.72900 * 26 24 23 29 29 H 1.08990 * 109.47579 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47006 * 300.00807 * 1 2 3 31 31 H 1.09002 * 109.46638 * 60.00039 * 1 2 3 32 32 H 1.09002 * 109.47447 * 239.99032 * 2 1 3 33 33 H 1.09007 * 109.47076 * 120.00117 * 2 1 3 34 34 H 1.09006 * 109.46889 * 29.99700 * 4 3 2 35 35 H 1.09000 * 109.47133 * 149.99097 * 4 3 2 36 36 H 0.97002 * 119.99949 * 179.97438 * 8 7 5 37 37 H 1.08992 * 109.47001 * 59.99355 * 15 13 3 38 38 H 1.09001 * 109.46613 * 299.99743 * 15 13 3 39 39 H 1.00894 * 110.99641 * 303.95280 * 16 15 13 40 40 H 1.08995 * 109.47478 * 60.00426 * 17 16 15 41 41 H 1.09006 * 109.47065 * 299.99823 * 17 16 15 42 42 H 1.09009 * 109.46730 * 59.99875 * 18 17 16 43 43 H 1.08998 * 109.46846 * 300.00419 * 18 17 16 44 44 H 0.97001 * 119.99790 * 359.97438 * 19 18 17 45 45 H 1.08003 * 127.24742 * 0.02562 * 23 22 20 46 46 H 1.08993 * 109.47323 * 90.00332 * 25 24 23 47 47 H 1.09002 * 109.46598 * 209.99761 * 25 24 23 48 48 H 1.08999 * 109.46751 * 329.99755 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2627 2.0717 -1.2688 5 6 3.6860 1.8347 -1.7037 6 1 4.3430 1.2306 -1.0957 7 6 4.1496 2.3902 -2.8775 8 7 3.3496 3.1263 -3.6177 9 14 5.9136 2.0959 -3.4170 10 1 5.9762 0.8753 -4.2605 11 1 6.3932 3.2634 -4.1994 12 1 6.7737 1.9150 -2.2201 13 6 2.2430 2.0166 1.1672 14 8 2.6470 3.1601 1.1671 15 6 1.9922 1.3061 2.4723 16 7 2.3108 2.2060 3.5888 17 6 2.0772 1.5459 4.8801 18 6 2.4199 2.5118 6.0161 19 7 2.1874 1.8533 7.3040 20 6 2.4179 2.5194 8.4527 21 8 2.8236 3.6650 8.4202 22 6 2.1777 1.8575 9.7512 23 6 2.3726 2.4232 11.0335 24 6 2.0261 1.4543 11.9128 25 6 2.0563 1.5587 13.4160 26 7 1.6483 0.3766 11.1922 27 1 1.3492 -0.4656 11.5690 28 7 1.7371 0.6290 9.9357 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5140 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.5819 1.6875 -2.0284 35 1 2.0957 3.1409 -1.1386 36 1 3.6760 3.5173 -4.4432 37 1 2.6225 0.4188 2.5299 38 1 0.9443 1.0117 2.5301 39 1 3.2591 2.5440 3.5214 40 1 2.7076 0.6598 4.9546 41 1 1.0296 1.2539 4.9546 42 1 1.7897 3.3982 5.9418 43 1 3.4675 2.8035 5.9414 44 1 1.8634 0.9394 7.3298 45 1 2.7240 3.4185 11.2624 46 1 1.0947 1.9264 13.7740 47 1 2.2518 0.5758 13.8446 48 1 2.8442 2.2494 13.7164 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001124229084.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:45 Heat of formation + Delta-G solvation = -29.118010 kcal Electronic energy + Delta-G solvation = -27699.487134 eV Core-core repulsion = 23596.752021 eV Total energy + Delta-G solvation = -4102.735113 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.69265 -40.75155 -40.48424 -37.60668 -36.84519 -35.43250 -34.85257 -33.68188 -32.94592 -31.64277 -30.77616 -29.13676 -27.91177 -26.91349 -25.08862 -24.48435 -23.70081 -23.03596 -22.24046 -21.12007 -19.95210 -18.66680 -18.62020 -18.17578 -17.71240 -17.40805 -17.23820 -16.92271 -16.89021 -16.29966 -16.15370 -15.36554 -15.25615 -14.92139 -14.80311 -14.62477 -14.53387 -14.47001 -14.11916 -13.98892 -13.70022 -13.51214 -13.44603 -13.21253 -13.09582 -13.05263 -12.66665 -12.64729 -12.48430 -12.42019 -12.13912 -11.92999 -11.84452 -11.70612 -11.41536 -10.63719 -10.56341 -10.54412 -10.14184 -9.93500 -9.44728 -9.38869 -8.21567 -6.36774 0.45287 1.09551 1.35979 1.39506 1.49509 1.76620 1.88720 2.09681 2.29584 2.32551 2.46082 3.07667 3.24725 3.43012 3.73046 3.79459 3.85508 4.07351 4.09974 4.14180 4.35159 4.40209 4.45765 4.47791 4.53401 4.59349 4.69483 4.80728 4.87841 4.90987 4.96296 5.02047 5.02742 5.07694 5.12330 5.23508 5.26666 5.34859 5.42381 5.59259 5.82509 5.93114 6.07871 6.08241 6.23661 6.39891 6.71806 6.83666 6.85508 7.09635 7.29748 7.54510 8.85328 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021801 B = 0.001611 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.023383 B =17371.419608 C =18020.695408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.263 3.737 5 C -0.543 4.543 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.969 3.031 10 H -0.262 1.262 11 H -0.282 1.282 12 H -0.273 1.273 13 C 0.491 3.509 14 O -0.588 6.588 15 C 0.061 3.939 16 N -0.691 5.691 17 C 0.062 3.938 18 C 0.124 3.876 19 N -0.701 5.701 20 C 0.599 3.401 21 O -0.573 6.573 22 C -0.037 4.037 23 C -0.209 4.209 24 C 0.034 3.966 25 C -0.085 4.085 26 N -0.363 5.363 27 H 0.463 0.537 28 N -0.264 5.264 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.020 0.980 35 H -0.007 1.007 36 H 0.267 0.733 37 H 0.085 0.915 38 H 0.125 0.875 39 H 0.346 0.654 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.418 0.582 45 H 0.159 0.841 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.875 -14.919 34.319 38.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.141 3.859 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.187 1.187 11 H -0.208 1.208 12 H -0.198 1.198 13 C 0.280 3.720 14 O -0.469 6.469 15 C -0.071 4.071 16 N -0.324 5.324 17 C -0.067 4.067 18 C 0.000 4.000 19 N -0.353 5.353 20 C 0.384 3.616 21 O -0.450 6.450 22 C -0.196 4.196 23 C -0.237 4.237 24 C -0.092 4.092 25 C -0.143 4.143 26 N -0.081 5.081 27 H 0.311 0.689 28 N -0.102 5.102 29 H 0.115 0.885 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.121 0.879 34 H 0.038 0.962 35 H 0.011 0.989 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.143 0.857 39 H 0.165 0.835 40 H 0.077 0.923 41 H 0.116 0.884 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.255 0.745 45 H 0.177 0.823 46 H 0.112 0.888 47 H 0.114 0.886 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.340 -14.044 33.461 37.024 hybrid contribution 1.556 -0.080 -0.490 1.633 sum -5.784 -14.124 32.971 36.332 Atomic orbital electron populations 1.22160 0.94659 1.03484 1.01659 1.21762 0.95255 0.81256 1.04007 1.48280 1.64098 1.15150 1.06119 1.18662 0.95207 0.91432 0.80564 1.21733 0.97929 1.31987 1.06532 0.92749 1.25880 1.02425 0.94457 0.96478 1.70062 1.37809 1.34193 1.14794 0.85399 0.78934 0.78168 0.78185 1.18707 1.20778 1.19783 1.21326 0.77395 0.86677 0.86620 1.90652 1.47690 1.20581 1.87927 1.21813 1.04655 0.93960 0.86640 1.59931 1.32736 1.38708 1.01041 1.22037 1.03348 0.94899 0.86444 1.21172 1.01315 0.96206 0.81300 1.45572 1.67002 1.18132 1.04633 1.17192 0.76836 0.84708 0.82860 1.90799 1.47864 1.18821 1.87553 1.21741 1.09905 0.93080 0.94904 1.21743 1.09584 1.02203 0.90189 1.21929 1.02237 0.87360 0.97687 1.20550 1.04990 1.05285 0.83466 1.43426 1.47295 1.15021 1.02382 0.68861 1.73440 1.19086 1.16762 1.00871 0.88532 0.91999 0.94597 0.91104 0.87856 0.96164 0.98870 0.92461 0.89735 0.85725 0.83514 0.92256 0.88373 0.91819 0.92199 0.74464 0.82293 0.88800 0.88616 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 10.24 71.98 0.74 -3.12 16 2 C 0.10 2.91 5.93 86.38 0.51 3.42 16 3 N -0.60 -25.53 2.46 -826.13 -2.03 -27.56 16 4 C 0.26 14.48 5.16 85.63 0.44 14.92 16 5 C -0.54 -31.79 9.39 25.60 0.24 -31.55 16 6 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 7 C 0.01 0.38 5.46 84.66 0.46 0.84 16 8 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 9 Si 0.97 45.57 29.54 68.60 2.03 47.60 16 10 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 13 C 0.49 20.43 7.71 87.66 0.68 21.10 16 14 O -0.59 -31.32 15.78 -3.03 -0.05 -31.36 16 15 C 0.06 1.62 4.72 85.56 0.40 2.02 16 16 N -0.69 -18.64 6.13 -517.92 -3.17 -21.81 16 17 C 0.06 1.11 5.80 86.30 0.50 1.61 16 18 C 0.12 2.72 5.93 86.38 0.51 3.23 16 19 N -0.70 -13.85 5.55 -466.08 -2.59 -16.44 16 20 C 0.60 15.15 7.83 86.75 0.68 15.83 16 21 O -0.57 -19.06 16.93 -3.95 -0.07 -19.13 16 22 C -0.04 -0.76 7.13 42.46 0.30 -0.46 16 23 C -0.21 -3.59 10.73 22.41 0.24 -3.35 16 24 C 0.03 0.32 7.23 41.40 0.30 0.62 16 25 C -0.08 -0.08 10.44 71.24 0.74 0.67 16 26 N -0.36 -3.11 6.83 -47.93 -0.33 -3.43 16 27 H 0.46 0.11 8.96 -220.00 -1.97 -1.86 16 28 N -0.26 -4.12 11.92 -48.18 -0.57 -4.70 16 29 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.36 7.22 -2.39 -0.02 1.34 16 31 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 33 H 0.10 2.19 6.44 -2.38 -0.02 2.18 16 34 H 0.02 1.14 8.07 -2.38 -0.02 1.12 16 35 H -0.01 -0.44 7.42 -2.39 -0.02 -0.46 16 36 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.08 1.77 7.40 -2.39 -0.02 1.76 16 38 H 0.12 2.62 7.19 -2.39 -0.02 2.60 16 39 H 0.35 10.43 8.43 -89.70 -0.76 9.68 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 42 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 43 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.42 6.04 8.20 -92.71 -0.76 5.28 16 45 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 46 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 47 H 0.10 -0.32 8.14 -2.39 -0.02 -0.34 16 48 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 Total: -1.00 -89.09 408.29 -2.23 -91.32 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -2.48 Total: 16.70 kcal Atomic # 6 Polarization: 19.06 SS G_CDS: 6.75 Total: 25.81 kcal Atomic # 7 Polarization: -122.52 SS G_CDS: -8.41 Total: -130.93 kcal Atomic # 8 Polarization: -50.38 SS G_CDS: -0.11 Total: -50.50 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -89.09 -2.23 -91.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124229084.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.202 kcal (2) G-P(sol) polarization free energy of solvation -89.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds