Wall clock time and date at job start Tue Mar 31 2020 20:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47408 * 2 1 4 4 C 1.46494 * 120.00307 * 270.00497 * 3 2 1 5 5 C 1.50698 * 109.47339 * 269.99705 * 4 3 2 6 6 H 1.07997 * 119.99554 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00068 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99880 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47199 * 89.99791 * 9 7 5 11 11 H 1.48507 * 109.47305 * 210.00275 * 9 7 5 12 12 H 1.48504 * 109.47097 * 330.00066 * 9 7 5 13 13 C 1.34780 * 119.99419 * 90.00010 * 3 2 1 14 14 O 1.21284 * 119.99845 * 180.02562 * 13 3 2 15 15 C 1.50693 * 120.00427 * 0.02562 * 13 3 2 16 16 N 1.46899 * 109.47306 * 180.02562 * 15 13 3 17 17 C 1.46900 * 111.00032 * 180.02562 * 16 15 13 18 18 C 1.52996 * 109.47447 * 179.97438 * 17 16 15 19 19 N 1.46504 * 109.47478 * 179.97438 * 18 17 16 20 20 C 1.34769 * 119.99835 * 180.02562 * 19 18 17 21 21 O 1.21628 * 120.00737 * 5.13477 * 20 19 18 22 22 C 1.47163 * 120.00108 * 185.14221 * 20 19 18 23 23 C 1.38407 * 126.88122 * 5.70801 * 22 20 19 24 24 C 1.39672 * 105.36216 * 180.02562 * 23 22 20 25 25 N 1.30868 * 107.85830 * 359.97438 * 24 23 22 26 26 N 1.28437 * 110.92708 * 0.02562 * 25 24 23 27 27 C 1.46504 * 125.18810 * 179.73719 * 26 25 24 28 28 H 1.08998 * 109.47223 * 299.99479 * 1 2 3 29 29 H 1.08995 * 109.47468 * 59.99674 * 1 2 3 30 30 H 1.09000 * 109.47275 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47134 * 240.00945 * 2 1 3 32 32 H 1.08995 * 109.47468 * 120.00326 * 2 1 3 33 33 H 1.09001 * 109.47452 * 30.00316 * 4 3 2 34 34 H 1.09004 * 109.47147 * 149.99416 * 4 3 2 35 35 H 0.97002 * 120.00253 * 179.97438 * 8 7 5 36 36 H 1.08995 * 109.47472 * 59.99488 * 15 13 3 37 37 H 1.09007 * 109.46979 * 299.99869 * 15 13 3 38 38 H 1.00899 * 111.00019 * 303.94752 * 16 15 13 39 39 H 1.09004 * 109.47268 * 59.99341 * 17 16 15 40 40 H 1.09008 * 109.47250 * 299.99398 * 17 16 15 41 41 H 1.09004 * 109.47132 * 59.99616 * 18 17 16 42 42 H 1.08997 * 109.47117 * 299.99872 * 18 17 16 43 43 H 0.96996 * 119.99697 * 359.97438 * 19 18 17 44 44 H 1.08002 * 127.32296 * 359.97438 * 23 22 20 45 45 H 1.07996 * 126.07080 * 179.97438 * 24 23 22 46 46 H 1.08998 * 109.47425 * 86.09113 * 27 26 25 47 47 H 1.08996 * 109.46850 * 206.09655 * 27 26 25 48 48 H 1.08996 * 109.46791 * 326.09371 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 3.6857 1.8351 -1.7038 6 1 4.3427 1.2310 -1.0958 7 6 4.1492 2.3907 -2.8774 8 7 3.3495 3.1276 -3.6170 9 14 5.9136 2.0978 -3.4164 10 1 5.9774 0.8772 -4.2597 11 1 6.3926 3.2657 -4.1988 12 1 6.7735 1.9178 -2.2191 13 6 2.2430 2.0164 1.1673 14 8 2.6469 3.1601 1.1674 15 6 1.9923 1.3059 2.4723 16 7 2.3098 2.2060 3.5889 17 6 2.0774 1.5453 4.8802 18 6 2.4189 2.5115 6.0163 19 7 2.1866 1.8528 7.3041 20 6 2.4210 2.5174 8.4528 21 8 2.7353 3.6920 8.4228 22 6 2.2968 1.8220 9.7438 23 6 2.0580 0.4730 9.9410 24 6 2.0258 0.3016 11.3268 25 7 2.2321 1.4693 11.8805 26 7 2.3939 2.3783 10.9876 27 6 2.6392 3.7965 11.2613 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 1.5816 1.6879 -2.0283 34 1 2.0954 3.1411 -1.1382 35 1 3.6757 3.5188 -4.4425 36 1 2.6227 0.4186 2.5299 37 1 0.9444 1.0114 2.5302 38 1 3.2579 2.5447 3.5220 39 1 2.7091 0.6601 4.9543 40 1 1.0303 1.2518 4.9549 41 1 1.7875 3.3970 5.9423 42 1 3.4660 2.8047 5.9415 43 1 1.8633 0.9387 7.3299 44 1 1.9240 -0.2858 9.1842 45 1 1.8601 -0.6292 11.8488 46 1 3.7076 3.9598 11.4022 47 1 2.2879 4.3947 10.4206 48 1 2.1045 4.0899 12.1646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001124540196.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:59 Heat of formation + Delta-G solvation = 15.404399 kcal Electronic energy + Delta-G solvation = -28006.077292 eV Core-core repulsion = 23905.272816 eV Total energy + Delta-G solvation = -4100.804477 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.93353 -39.81125 -39.15341 -36.68238 -35.32213 -34.67069 -33.59863 -32.80518 -31.63908 -30.14042 -29.56453 -27.58545 -27.33554 -25.46461 -23.60082 -23.03542 -22.54972 -22.14602 -21.73687 -20.42630 -18.68914 -18.26165 -16.79552 -16.71327 -16.52401 -16.42147 -16.17259 -16.04711 -15.53734 -15.28390 -14.88015 -14.41335 -14.30189 -14.15412 -13.91519 -13.70028 -13.48181 -13.31086 -13.29111 -13.19544 -12.75525 -12.45857 -12.27199 -12.00712 -11.82201 -11.68765 -11.47539 -11.26191 -11.18806 -10.92403 -10.76599 -10.54932 -10.50985 -10.14180 -9.74841 -9.64589 -9.50025 -9.40947 -8.97472 -8.46939 -8.44518 -7.66970 -6.05173 -4.10058 0.82301 1.93046 2.18494 2.70935 2.78980 3.28516 3.35284 3.37777 3.43263 3.72554 4.08629 4.13874 4.33682 4.44811 4.58527 4.68249 4.77158 4.81017 4.85351 5.05005 5.10852 5.15039 5.19100 5.22356 5.27273 5.29310 5.40297 5.45708 5.59329 5.62527 5.68209 5.77577 5.89997 5.99323 6.03379 6.20646 6.26032 6.45450 6.70701 6.94644 7.09191 7.25650 7.45362 7.54388 7.58369 7.69828 7.91303 8.22714 8.41830 8.89406 9.09751 9.55066 11.02799 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019913 B = 0.001698 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.791186 B =16482.856009 C =17134.749234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.503 3.497 14 O -0.527 6.527 15 C 0.043 3.957 16 N -0.669 5.669 17 C 0.050 3.950 18 C 0.121 3.879 19 N -0.712 5.712 20 C 0.592 3.408 21 O -0.535 6.535 22 C -0.038 4.038 23 C -0.189 4.189 24 C -0.003 4.003 25 N -0.279 5.279 26 N -0.256 5.256 27 C 0.082 3.918 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.355 0.645 39 H 0.037 0.963 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.404 0.596 44 H 0.162 0.838 45 H 0.188 0.812 46 H 0.086 0.914 47 H 0.113 0.887 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.979 -9.593 26.499 28.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.289 3.711 14 O -0.403 6.403 15 C -0.089 4.089 16 N -0.302 5.302 17 C -0.080 4.080 18 C -0.002 4.002 19 N -0.364 5.364 20 C 0.377 3.623 21 O -0.412 6.412 22 C -0.167 4.167 23 C -0.219 4.219 24 C -0.178 4.178 25 N -0.112 5.112 26 N -0.044 5.044 27 C -0.058 4.058 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.175 0.825 39 H 0.055 0.945 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.239 0.761 44 H 0.179 0.821 45 H 0.205 0.795 46 H 0.105 0.895 47 H 0.131 0.869 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.003 -6.987 27.302 28.814 hybrid contribution 1.473 -1.820 -1.139 2.603 sum -4.530 -8.807 26.163 27.975 Atomic orbital electron populations 1.22225 0.96783 1.01353 1.02427 1.21407 0.93526 0.84296 1.02554 1.48250 1.63986 1.13190 1.07697 1.19259 0.96183 0.93708 0.78074 1.21423 0.96950 1.31908 1.06255 0.92570 1.24938 0.97829 0.94928 0.96445 1.69930 1.35688 1.33292 1.14345 0.86504 0.84706 0.77663 0.78561 1.20685 1.21077 1.19962 1.20132 0.79034 0.87104 0.84854 1.90689 1.45087 1.17674 1.86895 1.21902 1.02431 0.94217 0.90389 1.59971 1.33182 1.37520 0.99569 1.22071 1.01869 0.95021 0.89060 1.21352 1.02550 0.96396 0.79949 1.45526 1.67787 1.17778 1.05280 1.16850 0.77395 0.85710 0.82373 1.90820 1.47904 1.15265 1.87259 1.21403 1.13415 0.94043 0.87875 1.22270 1.07873 0.94093 0.97627 1.23603 1.05433 0.96221 0.92585 1.73244 1.19118 0.98521 1.20287 1.45662 1.47776 1.09022 1.01910 1.22410 1.03854 0.74401 1.05102 0.93033 0.91980 0.92228 0.89960 0.91954 0.95044 0.93844 0.92713 0.92745 0.88613 0.82461 0.94529 0.90180 0.89628 0.90867 0.76131 0.82080 0.79523 0.89543 0.86908 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 37.15 0.38 -1.75 16 2 C 0.11 1.60 5.93 -4.04 -0.02 1.57 16 3 N -0.60 -12.15 2.46 -175.07 -0.43 -12.58 16 4 C 0.25 6.35 5.16 -5.20 -0.03 6.33 16 5 C -0.53 -14.73 9.39 -34.44 -0.32 -15.06 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 9 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.50 10.03 7.71 -10.99 -0.08 9.94 16 14 O -0.53 -13.03 15.78 5.55 0.09 -12.94 16 15 C 0.04 0.58 4.72 -4.98 -0.02 0.56 16 16 N -0.67 -8.60 6.13 -115.06 -0.70 -9.30 16 17 C 0.05 0.42 5.80 -3.83 -0.02 0.40 16 18 C 0.12 1.09 5.94 -4.04 -0.02 1.07 16 19 N -0.71 -5.37 5.53 -61.47 -0.34 -5.71 16 20 C 0.59 5.92 7.78 -12.64 -0.10 5.82 16 21 O -0.54 -6.97 14.69 5.25 0.08 -6.89 16 22 C -0.04 -0.35 6.96 -82.06 -0.57 -0.92 16 23 C -0.19 -1.29 10.50 -38.98 -0.41 -1.70 16 24 C 0.00 -0.02 12.03 -17.43 -0.21 -0.23 16 25 N -0.28 -2.68 11.90 30.59 0.36 -2.32 16 26 N -0.26 -2.42 3.75 -63.88 -0.24 -2.66 16 27 C 0.08 0.58 10.88 59.85 0.65 1.23 16 28 H 0.05 0.61 7.22 -51.93 -0.38 0.24 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 32 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 33 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 36 H 0.05 0.64 7.40 -51.93 -0.38 0.25 16 37 H 0.10 1.11 7.19 -51.93 -0.37 0.74 16 38 H 0.36 4.92 8.43 -39.29 -0.33 4.59 16 39 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.40 1.86 7.56 -40.82 -0.31 1.55 16 44 H 0.16 0.56 7.63 -52.49 -0.40 0.16 16 45 H 0.19 0.75 8.06 -52.49 -0.42 0.33 16 46 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.11 0.89 6.22 -51.93 -0.32 0.56 16 48 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 403.84 15.07 6.09 6.09 Total: -1.00 -36.81 403.84 -7.67 -44.48 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -7.40 Total: 1.94 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -0.88 Total: 8.90 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: -0.61 Total: -58.26 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: 0.16 Total: -19.83 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.81 -7.67 -44.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124540196.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.887 kcal (2) G-P(sol) polarization free energy of solvation -36.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds