Wall clock time and date at job start Tue Mar 31 2020 20:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47408 * 2 1 4 4 C 1.46494 * 120.00307 * 270.00497 * 3 2 1 5 5 C 1.50698 * 109.47339 * 269.99705 * 4 3 2 6 6 H 1.07997 * 119.99554 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00068 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99880 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47199 * 89.99791 * 9 7 5 11 11 H 1.48507 * 109.47305 * 210.00275 * 9 7 5 12 12 H 1.48504 * 109.47097 * 330.00066 * 9 7 5 13 13 C 1.34780 * 119.99419 * 90.00010 * 3 2 1 14 14 O 1.21284 * 119.99845 * 180.02562 * 13 3 2 15 15 C 1.50693 * 120.00427 * 0.02562 * 13 3 2 16 16 N 1.46899 * 109.47306 * 180.02562 * 15 13 3 17 17 C 1.46900 * 111.00032 * 180.02562 * 16 15 13 18 18 C 1.52996 * 109.47447 * 179.97438 * 17 16 15 19 19 N 1.46504 * 109.47478 * 179.97438 * 18 17 16 20 20 C 1.34769 * 119.99835 * 180.02562 * 19 18 17 21 21 O 1.21628 * 120.00737 * 5.13477 * 20 19 18 22 22 C 1.47163 * 120.00108 * 185.14221 * 20 19 18 23 23 C 1.38407 * 126.88122 * 5.70801 * 22 20 19 24 24 C 1.39672 * 105.36216 * 180.02562 * 23 22 20 25 25 N 1.30868 * 107.85830 * 359.97438 * 24 23 22 26 26 N 1.28437 * 110.92708 * 0.02562 * 25 24 23 27 27 C 1.46504 * 125.18810 * 179.73719 * 26 25 24 28 28 H 1.08998 * 109.47223 * 299.99479 * 1 2 3 29 29 H 1.08995 * 109.47468 * 59.99674 * 1 2 3 30 30 H 1.09000 * 109.47275 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47134 * 240.00945 * 2 1 3 32 32 H 1.08995 * 109.47468 * 120.00326 * 2 1 3 33 33 H 1.09001 * 109.47452 * 30.00316 * 4 3 2 34 34 H 1.09004 * 109.47147 * 149.99416 * 4 3 2 35 35 H 0.97002 * 120.00253 * 179.97438 * 8 7 5 36 36 H 1.08995 * 109.47472 * 59.99488 * 15 13 3 37 37 H 1.09007 * 109.46979 * 299.99869 * 15 13 3 38 38 H 1.00899 * 111.00019 * 303.94752 * 16 15 13 39 39 H 1.09004 * 109.47268 * 59.99341 * 17 16 15 40 40 H 1.09008 * 109.47250 * 299.99398 * 17 16 15 41 41 H 1.09004 * 109.47132 * 59.99616 * 18 17 16 42 42 H 1.08997 * 109.47117 * 299.99872 * 18 17 16 43 43 H 0.96996 * 119.99697 * 359.97438 * 19 18 17 44 44 H 1.08002 * 127.32296 * 359.97438 * 23 22 20 45 45 H 1.07996 * 126.07080 * 179.97438 * 24 23 22 46 46 H 1.08998 * 109.47425 * 86.09113 * 27 26 25 47 47 H 1.08996 * 109.46850 * 206.09655 * 27 26 25 48 48 H 1.08996 * 109.46791 * 326.09371 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 3.6857 1.8351 -1.7038 6 1 4.3427 1.2310 -1.0958 7 6 4.1492 2.3907 -2.8774 8 7 3.3495 3.1276 -3.6170 9 14 5.9136 2.0978 -3.4164 10 1 5.9774 0.8772 -4.2597 11 1 6.3926 3.2657 -4.1988 12 1 6.7735 1.9178 -2.2191 13 6 2.2430 2.0164 1.1673 14 8 2.6469 3.1601 1.1674 15 6 1.9923 1.3059 2.4723 16 7 2.3098 2.2060 3.5889 17 6 2.0774 1.5453 4.8802 18 6 2.4189 2.5115 6.0163 19 7 2.1866 1.8528 7.3041 20 6 2.4210 2.5174 8.4528 21 8 2.7353 3.6920 8.4228 22 6 2.2968 1.8220 9.7438 23 6 2.0580 0.4730 9.9410 24 6 2.0258 0.3016 11.3268 25 7 2.2321 1.4693 11.8805 26 7 2.3939 2.3783 10.9876 27 6 2.6392 3.7965 11.2613 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 1.5816 1.6879 -2.0283 34 1 2.0954 3.1411 -1.1382 35 1 3.6757 3.5188 -4.4425 36 1 2.6227 0.4186 2.5299 37 1 0.9444 1.0114 2.5302 38 1 3.2579 2.5447 3.5220 39 1 2.7091 0.6601 4.9543 40 1 1.0303 1.2518 4.9549 41 1 1.7875 3.3970 5.9423 42 1 3.4660 2.8047 5.9415 43 1 1.8633 0.9387 7.3299 44 1 1.9240 -0.2858 9.1842 45 1 1.8601 -0.6292 11.8488 46 1 3.7076 3.9598 11.4022 47 1 2.2879 4.3947 10.4206 48 1 2.1045 4.0899 12.1646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001124540196.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:57 Heat of formation + Delta-G solvation = -14.058135 kcal Electronic energy + Delta-G solvation = -28007.354884 eV Core-core repulsion = 23905.272816 eV Total energy + Delta-G solvation = -4102.082068 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.51818 -40.74024 -40.49941 -37.61401 -36.84312 -35.57743 -34.86116 -34.18279 -32.34699 -31.59685 -30.52392 -29.03728 -28.04447 -26.77739 -24.77150 -24.26966 -23.64856 -23.14219 -22.36201 -21.09406 -19.95684 -19.11985 -18.60002 -17.85478 -17.45930 -17.43533 -17.25992 -17.05369 -16.61116 -16.28194 -16.20602 -15.54308 -15.36875 -14.95182 -14.72068 -14.60760 -14.57246 -14.49715 -14.39605 -14.10011 -13.74758 -13.50585 -13.43535 -13.28727 -13.20246 -13.04436 -12.65469 -12.63616 -12.46809 -12.39803 -12.13017 -11.85669 -11.82858 -11.70046 -11.30393 -10.63489 -10.54812 -10.46119 -10.11063 -10.00389 -9.42248 -9.37065 -8.21218 -6.36226 0.18544 1.34115 1.36265 1.39575 1.49477 1.63737 1.90503 2.02129 2.11073 2.32346 2.46410 3.08013 3.28237 3.58434 3.62256 3.75125 3.88114 4.11614 4.13893 4.16202 4.26522 4.37016 4.37672 4.42829 4.49553 4.54698 4.58862 4.65377 4.71428 4.84727 4.90138 4.93766 4.97778 5.03680 5.09063 5.21914 5.25409 5.44062 5.54528 5.59920 5.70180 5.84365 5.94828 6.08322 6.25981 6.33938 6.72548 6.87288 6.98075 7.07024 7.30318 7.56126 8.85567 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019913 B = 0.001698 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.791186 B =16482.856009 C =17134.749234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.262 3.738 5 C -0.541 4.541 6 H 0.055 0.945 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.263 1.263 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.490 3.510 14 O -0.590 6.590 15 C 0.062 3.938 16 N -0.693 5.693 17 C 0.060 3.940 18 C 0.127 3.873 19 N -0.693 5.693 20 C 0.589 3.411 21 O -0.576 6.576 22 C -0.063 4.063 23 C -0.172 4.172 24 C -0.007 4.007 25 N -0.305 5.305 26 N -0.272 5.272 27 C 0.081 3.919 28 H 0.062 0.938 29 H 0.033 0.967 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.020 0.980 34 H -0.007 1.007 35 H 0.266 0.734 36 H 0.087 0.913 37 H 0.126 0.874 38 H 0.346 0.654 39 H 0.064 0.936 40 H 0.101 0.899 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.421 0.579 44 H 0.198 0.802 45 H 0.218 0.782 46 H 0.090 0.910 47 H 0.100 0.900 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.092 -13.475 27.988 31.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.140 3.860 5 C -0.579 4.579 6 H 0.073 0.927 7 C -0.194 4.194 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.188 1.188 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.279 3.721 14 O -0.470 6.470 15 C -0.070 4.070 16 N -0.326 5.326 17 C -0.069 4.069 18 C 0.003 3.997 19 N -0.346 5.346 20 C 0.375 3.625 21 O -0.456 6.456 22 C -0.191 4.191 23 C -0.201 4.201 24 C -0.182 4.182 25 N -0.138 5.138 26 N -0.060 5.060 27 C -0.059 4.059 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.038 0.962 34 H 0.011 0.989 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.144 0.856 38 H 0.164 0.836 39 H 0.082 0.918 40 H 0.119 0.881 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.260 0.740 44 H 0.215 0.785 45 H 0.235 0.765 46 H 0.108 0.892 47 H 0.118 0.882 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.161 -10.965 28.810 31.435 hybrid contribution 1.449 -0.638 -1.565 2.226 sum -4.711 -11.603 27.245 29.985 Atomic orbital electron populations 1.22160 0.94682 1.03481 1.01648 1.21763 0.95228 0.81231 1.04041 1.48281 1.64097 1.15160 1.06116 1.18662 0.95197 0.91444 0.80657 1.21720 0.97905 1.31855 1.06440 0.92700 1.25887 1.02406 0.94541 0.96564 1.70060 1.37809 1.34192 1.14823 0.85406 0.79001 0.78117 0.78208 1.18767 1.20888 1.19688 1.21382 0.77364 0.86688 0.86684 1.90654 1.47741 1.20639 1.87951 1.21808 1.04727 0.93944 0.86511 1.59938 1.32771 1.38722 1.01170 1.22071 1.03630 0.94966 0.86261 1.21158 1.01300 0.96244 0.80988 1.45299 1.66873 1.18331 1.04056 1.17088 0.76834 0.85326 0.83248 1.90802 1.49872 1.17070 1.87834 1.21508 1.15108 0.95137 0.87372 1.22749 1.05512 0.93558 0.98289 1.24249 1.04223 0.96565 0.93155 1.73224 1.20046 0.99497 1.21069 1.45854 1.48486 1.09505 1.02128 1.22440 1.04304 0.73932 1.05226 0.91889 0.94737 0.88540 0.91228 0.87668 0.96211 0.98884 0.92497 0.89586 0.85646 0.83588 0.91808 0.88109 0.91888 0.92183 0.74018 0.78461 0.76501 0.89176 0.88155 0.87323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 10.24 71.98 0.74 -2.88 16 2 C 0.10 2.76 5.93 86.38 0.51 3.27 16 3 N -0.60 -24.60 2.46 -826.18 -2.03 -26.63 16 4 C 0.26 14.13 5.16 85.63 0.44 14.57 16 5 C -0.54 -31.02 9.39 25.60 0.24 -30.78 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 7 C 0.00 0.28 5.46 84.66 0.46 0.74 16 8 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 9 Si 0.97 44.87 29.54 68.60 2.03 46.89 16 10 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 13 C 0.49 19.45 7.71 87.65 0.68 20.12 16 14 O -0.59 -30.36 15.78 -3.04 -0.05 -30.41 16 15 C 0.06 1.48 4.72 85.56 0.40 1.88 16 16 N -0.69 -16.51 6.13 -517.94 -3.17 -19.68 16 17 C 0.06 0.81 5.80 86.30 0.50 1.31 16 18 C 0.13 2.15 5.94 86.38 0.51 2.66 16 19 N -0.69 -9.04 5.53 -466.64 -2.58 -11.62 16 20 C 0.59 11.43 7.78 86.59 0.67 12.10 16 21 O -0.58 -15.53 14.69 -4.12 -0.06 -15.60 16 22 C -0.06 -1.07 6.96 40.79 0.28 -0.79 16 23 C -0.17 -1.81 10.50 22.66 0.24 -1.57 16 24 C -0.01 -0.08 12.03 85.18 1.02 0.94 16 25 N -0.31 -5.52 11.90 -57.14 -0.68 -6.20 16 26 N -0.27 -5.03 3.75 -356.02 -1.33 -6.36 16 27 C 0.08 1.19 10.88 127.77 1.39 2.59 16 28 H 0.06 1.27 7.22 -2.39 -0.02 1.25 16 29 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 2.11 8.07 -2.38 -0.02 2.09 16 32 H 0.11 2.03 6.44 -2.39 -0.02 2.01 16 33 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 34 H -0.01 -0.44 7.42 -2.38 -0.02 -0.46 16 35 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 36 H 0.09 1.56 7.40 -2.39 -0.02 1.55 16 37 H 0.13 2.29 7.19 -2.38 -0.02 2.28 16 38 H 0.35 9.41 8.43 -89.69 -0.76 8.65 16 39 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.42 2.31 7.56 -92.71 -0.70 1.61 16 44 H 0.20 0.39 7.63 -2.91 -0.02 0.37 16 45 H 0.22 0.98 8.06 -2.91 -0.02 0.95 16 46 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.10 1.73 6.22 -2.39 -0.01 1.71 16 48 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -87.01 403.84 0.03 -86.98 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -0.47 Total: 14.76 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: 8.10 Total: 24.16 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -9.51 Total: -126.80 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -0.11 Total: -46.00 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -87.01 0.03 -86.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124540196.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.921 kcal (2) G-P(sol) polarization free energy of solvation -87.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds