Wall clock time and date at job start Tue Mar 31 2020 20:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47238 * 2 1 4 4 C 1.46502 * 119.99841 * 270.00081 * 3 2 1 5 5 C 1.50697 * 109.47292 * 269.99465 * 4 3 2 6 6 H 1.07995 * 119.99927 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99942 * 179.97438 * 5 4 3 8 8 N 1.31521 * 120.00204 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00153 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46876 * 60.00569 * 9 7 5 11 11 H 1.48499 * 109.47388 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47343 * 300.00551 * 9 7 5 13 13 C 1.34776 * 119.99672 * 90.00116 * 3 2 1 14 14 O 1.21289 * 119.99397 * 180.02562 * 13 3 2 15 15 C 1.50692 * 120.00309 * 0.02562 * 13 3 2 16 16 N 1.46897 * 109.47188 * 179.97438 * 15 13 3 17 17 C 1.46906 * 111.00274 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47487 * 180.02562 * 17 16 15 19 19 N 1.46491 * 109.47255 * 180.02562 * 18 17 16 20 20 C 1.34775 * 120.00113 * 180.02562 * 19 18 17 21 21 O 1.21680 * 120.00199 * 0.02562 * 20 19 18 22 22 C 1.46770 * 120.00025 * 179.97438 * 20 19 18 23 23 C 1.36662 * 126.84528 * 180.02562 * 22 20 19 24 24 N 1.33317 * 107.78820 * 180.02562 * 23 22 20 25 25 C 1.30863 * 109.68222 * 359.97438 * 24 23 22 26 26 C 1.50698 * 125.41452 * 180.26537 * 25 24 23 27 27 N 1.34495 * 109.16289 * 0.02562 * 25 24 23 28 28 H 0.96997 * 126.46676 * 179.97438 * 27 25 24 29 29 H 1.08994 * 109.46946 * 299.99699 * 1 2 3 30 30 H 1.08997 * 109.46957 * 59.99827 * 1 2 3 31 31 H 1.09000 * 109.47164 * 179.97438 * 1 2 3 32 32 H 1.09011 * 109.46998 * 240.00061 * 2 1 3 33 33 H 1.09001 * 109.47392 * 120.00337 * 2 1 3 34 34 H 1.09002 * 109.47289 * 30.00397 * 4 3 2 35 35 H 1.09006 * 109.46496 * 150.00105 * 4 3 2 36 36 H 0.96996 * 119.99933 * 179.97438 * 8 7 5 37 37 H 1.09008 * 109.47276 * 59.99929 * 15 13 3 38 38 H 1.08997 * 109.47042 * 299.99913 * 15 13 3 39 39 H 1.00896 * 111.00822 * 303.95695 * 16 15 13 40 40 H 1.09000 * 109.46692 * 60.00097 * 17 16 15 41 41 H 1.09004 * 109.46932 * 300.00300 * 17 16 15 42 42 H 1.09001 * 109.46900 * 59.99832 * 18 17 16 43 43 H 1.08996 * 109.47223 * 300.00243 * 18 17 16 44 44 H 0.97007 * 120.00352 * 359.97438 * 19 18 17 45 45 H 1.07998 * 126.10375 * 359.97438 * 23 22 20 46 46 H 1.09000 * 109.47665 * 269.69781 * 26 25 24 47 47 H 1.09008 * 109.47400 * 29.69938 * 26 25 24 48 48 H 1.08996 * 109.46827 * 149.69612 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8351 -1.7038 6 1 4.3426 1.2304 -1.0962 7 6 4.1490 2.3897 -2.8780 8 7 3.3489 3.1257 -3.6182 9 14 5.9130 2.0957 -3.4176 10 1 6.1401 0.6389 -3.5950 11 1 6.1605 2.7958 -4.7036 12 1 6.8410 2.6190 -2.3831 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9924 1.3059 2.4723 16 7 2.3111 2.2057 3.5888 17 6 2.0776 1.5455 4.8802 18 6 2.4192 2.5117 6.0162 19 7 2.1870 1.8531 7.3039 20 6 2.4214 2.5177 8.4528 21 8 2.8256 3.6650 8.4204 22 6 2.1882 1.8580 9.7429 23 6 2.3776 2.3964 10.9847 24 7 2.0507 1.4689 11.8849 25 6 1.6659 0.3777 11.2736 26 6 1.2131 -0.8897 11.9516 27 7 1.7338 0.5691 9.9441 28 1 1.5067 -0.0762 9.2564 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.5816 1.6877 -2.0284 35 1 2.0955 3.1410 -1.1383 36 1 3.6750 3.5162 -4.4441 37 1 2.6230 0.4186 2.5298 38 1 0.9446 1.0114 2.5302 39 1 3.2593 2.5439 3.5215 40 1 2.7082 0.6594 4.9544 41 1 1.0301 1.2533 4.9548 42 1 1.7884 3.3975 5.9417 43 1 3.4665 2.8043 5.9418 44 1 1.8637 0.9388 7.3299 45 1 2.7299 3.3946 11.1986 46 1 2.0715 -1.5415 12.1143 47 1 0.7554 -0.6455 12.9103 48 1 0.4847 -1.3990 11.3206 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001124819223.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:23 Heat of formation + Delta-G solvation = -13.490334 kcal Electronic energy + Delta-G solvation = -27807.399713 eV Core-core repulsion = 23705.342267 eV Total energy + Delta-G solvation = -4102.057446 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.71666 -39.74709 -39.17208 -36.68368 -35.33129 -34.61102 -33.19890 -32.80805 -32.42615 -30.20455 -29.90605 -28.07305 -27.24651 -25.39481 -23.41949 -23.05458 -22.46152 -22.17315 -21.37945 -20.80072 -19.17831 -18.42986 -16.73203 -16.60056 -16.48362 -16.39187 -16.23835 -16.05535 -15.56437 -15.23301 -14.68591 -14.44625 -14.36034 -14.21151 -13.83200 -13.72531 -13.50021 -13.37993 -13.32635 -13.15315 -13.03732 -12.47930 -12.28578 -12.02284 -11.85225 -11.71967 -11.50046 -11.20035 -10.95330 -10.91408 -10.77994 -10.69901 -10.55285 -10.43046 -10.15419 -9.67653 -9.59463 -8.99896 -8.96229 -8.50102 -8.45074 -7.69064 -6.06037 -4.11180 0.80700 2.26933 2.32680 2.57770 2.93615 3.29374 3.34503 3.35078 3.41027 3.70360 3.80991 4.22905 4.30645 4.42313 4.43549 4.61346 4.75518 4.78974 4.87255 5.02018 5.02333 5.09599 5.18945 5.26591 5.28292 5.30248 5.36786 5.42104 5.57068 5.59517 5.66440 5.74540 5.86580 5.96202 6.07220 6.17997 6.42621 6.61645 6.67707 6.93036 7.07282 7.22629 7.41825 7.43776 7.52438 7.69937 7.90098 8.21443 8.39697 8.87845 9.07682 9.53951 11.01901 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019756 B = 0.001663 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.970389 B =16837.346997 C =17484.652323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.247 3.753 5 C -0.528 4.528 6 H 0.055 0.945 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.503 3.497 14 O -0.526 6.526 15 C 0.043 3.957 16 N -0.669 5.669 17 C 0.051 3.949 18 C 0.120 3.880 19 N -0.728 5.728 20 C 0.595 3.405 21 O -0.518 6.518 22 C -0.092 4.092 23 C 0.075 3.925 24 N -0.495 5.495 25 C 0.240 3.760 26 C -0.075 4.075 27 N -0.553 5.553 28 H 0.421 0.579 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.032 0.968 35 H 0.044 0.956 36 H 0.264 0.736 37 H 0.054 0.946 38 H 0.095 0.905 39 H 0.356 0.644 40 H 0.034 0.966 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.393 0.607 45 H 0.186 0.814 46 H 0.087 0.913 47 H 0.096 0.904 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.589 -14.012 26.366 30.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.567 4.567 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.289 3.711 14 O -0.402 6.402 15 C -0.089 4.089 16 N -0.302 5.302 17 C -0.079 4.079 18 C -0.004 4.004 19 N -0.380 5.380 20 C 0.381 3.619 21 O -0.393 6.393 22 C -0.207 4.207 23 C -0.079 4.079 24 N -0.216 5.216 25 C -0.024 4.024 26 C -0.134 4.134 27 N -0.159 5.159 28 H 0.259 0.741 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.176 0.824 40 H 0.052 0.948 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.226 0.774 45 H 0.203 0.797 46 H 0.106 0.894 47 H 0.115 0.885 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.638 -11.976 26.928 30.445 hybrid contribution 1.368 -1.783 -1.709 2.823 sum -6.270 -13.759 25.220 29.405 Atomic orbital electron populations 1.22226 0.96790 1.01332 1.02436 1.21406 0.93518 0.84322 1.02530 1.48253 1.63986 1.13172 1.07709 1.19258 0.96174 0.93703 0.78031 1.21383 0.96958 1.32063 1.06299 0.92633 1.24934 0.97822 0.94915 0.96398 1.69921 1.35706 1.33269 1.14337 0.86565 0.84820 0.78170 0.77875 1.20326 1.21141 1.20200 1.20120 0.79075 0.87115 0.84836 1.90695 1.45032 1.17644 1.86876 1.21901 1.02355 0.94207 0.90457 1.59947 1.33224 1.37546 0.99521 1.22065 1.01606 0.95007 0.89250 1.21338 1.02695 0.96306 0.80033 1.45770 1.68939 1.17139 1.06157 1.16794 0.77825 0.85602 0.81643 1.90902 1.45430 1.16418 1.86511 1.21156 1.15842 0.86858 0.96869 1.22720 0.99159 0.99630 0.86362 1.70241 1.18389 0.99855 1.33077 1.23525 1.00968 0.97937 0.79957 1.20335 1.02049 0.89811 1.01169 1.43240 1.50969 1.12679 1.09015 0.74087 0.93066 0.91940 0.92245 0.89938 0.92018 0.95041 0.93841 0.92640 0.92821 0.88665 0.82365 0.94764 0.90396 0.89637 0.90791 0.77413 0.79718 0.89444 0.88499 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.24 37.16 0.38 -1.73 16 2 C 0.11 1.60 5.93 -4.04 -0.02 1.57 16 3 N -0.60 -12.15 2.46 -175.05 -0.43 -12.58 16 4 C 0.25 6.37 5.16 -5.19 -0.03 6.34 16 5 C -0.53 -14.79 9.39 -34.44 -0.32 -15.12 16 6 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 9 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 13 C 0.50 10.04 7.71 -10.99 -0.08 9.95 16 14 O -0.53 -13.05 15.78 5.55 0.09 -12.96 16 15 C 0.04 0.59 4.72 -4.98 -0.02 0.56 16 16 N -0.67 -8.67 6.12 -115.06 -0.70 -9.38 16 17 C 0.05 0.43 5.80 -3.82 -0.02 0.41 16 18 C 0.12 1.12 5.93 -4.05 -0.02 1.09 16 19 N -0.73 -5.44 5.55 -61.60 -0.34 -5.78 16 20 C 0.60 6.11 7.79 -12.81 -0.10 6.01 16 21 O -0.52 -7.44 16.90 5.21 0.09 -7.35 16 22 C -0.09 -0.80 7.08 -82.14 -0.58 -1.38 16 23 C 0.08 0.74 11.66 -17.48 -0.20 0.53 16 24 N -0.50 -4.77 11.20 -10.58 -0.12 -4.89 16 25 C 0.24 1.53 8.12 -155.61 -1.26 0.27 16 26 C -0.08 -0.17 10.51 36.00 0.38 0.21 16 27 N -0.55 -2.92 6.07 -7.02 -0.04 -2.96 16 28 H 0.42 0.67 8.32 -40.82 -0.34 0.34 16 29 H 0.05 0.60 7.22 -51.93 -0.38 0.23 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 1.30 8.07 -51.92 -0.42 0.89 16 33 H 0.06 0.74 6.44 -51.93 -0.33 0.40 16 34 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.05 0.63 7.40 -51.92 -0.38 0.24 16 38 H 0.10 1.10 7.19 -51.93 -0.37 0.73 16 39 H 0.36 5.00 8.43 -39.29 -0.33 4.67 16 40 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.39 1.59 7.72 -40.82 -0.31 1.27 16 45 H 0.19 1.66 8.06 -52.49 -0.42 1.24 16 46 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 47 H 0.10 0.23 8.14 -51.92 -0.42 -0.19 16 48 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16 LS Contribution 407.46 15.07 6.14 6.14 Total: -1.00 -38.08 407.46 -9.07 -47.15 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -7.45 Total: 1.23 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: -2.01 Total: 10.38 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: -0.90 Total: -61.27 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: 0.18 Total: -20.31 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -38.08 -9.07 -47.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124819223.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.659 kcal (2) G-P(sol) polarization free energy of solvation -38.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds