Wall clock time and date at job start Tue Mar 31 2020 20:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47238 * 2 1 4 4 C 1.46502 * 119.99841 * 270.00081 * 3 2 1 5 5 C 1.50697 * 109.47292 * 269.99465 * 4 3 2 6 6 H 1.07995 * 119.99927 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99942 * 179.97438 * 5 4 3 8 8 N 1.31521 * 120.00204 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00153 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46876 * 60.00569 * 9 7 5 11 11 H 1.48499 * 109.47388 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47343 * 300.00551 * 9 7 5 13 13 C 1.34776 * 119.99672 * 90.00116 * 3 2 1 14 14 O 1.21289 * 119.99397 * 180.02562 * 13 3 2 15 15 C 1.50692 * 120.00309 * 0.02562 * 13 3 2 16 16 N 1.46897 * 109.47188 * 179.97438 * 15 13 3 17 17 C 1.46906 * 111.00274 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47487 * 180.02562 * 17 16 15 19 19 N 1.46491 * 109.47255 * 180.02562 * 18 17 16 20 20 C 1.34775 * 120.00113 * 180.02562 * 19 18 17 21 21 O 1.21680 * 120.00199 * 0.02562 * 20 19 18 22 22 C 1.46770 * 120.00025 * 179.97438 * 20 19 18 23 23 C 1.36662 * 126.84528 * 180.02562 * 22 20 19 24 24 N 1.33317 * 107.78820 * 180.02562 * 23 22 20 25 25 C 1.30863 * 109.68222 * 359.97438 * 24 23 22 26 26 C 1.50698 * 125.41452 * 180.26537 * 25 24 23 27 27 N 1.34495 * 109.16289 * 0.02562 * 25 24 23 28 28 H 0.96997 * 126.46676 * 179.97438 * 27 25 24 29 29 H 1.08994 * 109.46946 * 299.99699 * 1 2 3 30 30 H 1.08997 * 109.46957 * 59.99827 * 1 2 3 31 31 H 1.09000 * 109.47164 * 179.97438 * 1 2 3 32 32 H 1.09011 * 109.46998 * 240.00061 * 2 1 3 33 33 H 1.09001 * 109.47392 * 120.00337 * 2 1 3 34 34 H 1.09002 * 109.47289 * 30.00397 * 4 3 2 35 35 H 1.09006 * 109.46496 * 150.00105 * 4 3 2 36 36 H 0.96996 * 119.99933 * 179.97438 * 8 7 5 37 37 H 1.09008 * 109.47276 * 59.99929 * 15 13 3 38 38 H 1.08997 * 109.47042 * 299.99913 * 15 13 3 39 39 H 1.00896 * 111.00822 * 303.95695 * 16 15 13 40 40 H 1.09000 * 109.46692 * 60.00097 * 17 16 15 41 41 H 1.09004 * 109.46932 * 300.00300 * 17 16 15 42 42 H 1.09001 * 109.46900 * 59.99832 * 18 17 16 43 43 H 1.08996 * 109.47223 * 300.00243 * 18 17 16 44 44 H 0.97007 * 120.00352 * 359.97438 * 19 18 17 45 45 H 1.07998 * 126.10375 * 359.97438 * 23 22 20 46 46 H 1.09000 * 109.47665 * 269.69781 * 26 25 24 47 47 H 1.09008 * 109.47400 * 29.69938 * 26 25 24 48 48 H 1.08996 * 109.46827 * 149.69612 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8351 -1.7038 6 1 4.3426 1.2304 -1.0962 7 6 4.1490 2.3897 -2.8780 8 7 3.3489 3.1257 -3.6182 9 14 5.9130 2.0957 -3.4176 10 1 6.1401 0.6389 -3.5950 11 1 6.1605 2.7958 -4.7036 12 1 6.8410 2.6190 -2.3831 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9924 1.3059 2.4723 16 7 2.3111 2.2057 3.5888 17 6 2.0776 1.5455 4.8802 18 6 2.4192 2.5117 6.0162 19 7 2.1870 1.8531 7.3039 20 6 2.4214 2.5177 8.4528 21 8 2.8256 3.6650 8.4204 22 6 2.1882 1.8580 9.7429 23 6 2.3776 2.3964 10.9847 24 7 2.0507 1.4689 11.8849 25 6 1.6659 0.3777 11.2736 26 6 1.2131 -0.8897 11.9516 27 7 1.7338 0.5691 9.9441 28 1 1.5067 -0.0762 9.2564 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.5816 1.6877 -2.0284 35 1 2.0955 3.1410 -1.1383 36 1 3.6750 3.5162 -4.4441 37 1 2.6230 0.4186 2.5298 38 1 0.9446 1.0114 2.5302 39 1 3.2593 2.5439 3.5215 40 1 2.7082 0.6594 4.9544 41 1 1.0301 1.2533 4.9548 42 1 1.7884 3.3975 5.9417 43 1 3.4665 2.8043 5.9418 44 1 1.8637 0.9388 7.3299 45 1 2.7299 3.3946 11.1986 46 1 2.0715 -1.5415 12.1143 47 1 0.7554 -0.6455 12.9103 48 1 0.4847 -1.3990 11.3206 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001124819223.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:22 Heat of formation + Delta-G solvation = -44.834216 kcal Electronic energy + Delta-G solvation = -27808.758886 eV Core-core repulsion = 23705.342267 eV Total energy + Delta-G solvation = -4103.416619 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.29159 -40.75901 -40.48813 -37.64436 -36.86411 -35.56246 -34.86937 -33.78784 -32.87550 -31.65230 -30.85028 -29.25624 -28.27665 -26.68728 -24.72969 -24.17097 -23.60578 -23.12961 -21.97652 -21.44220 -20.04129 -19.67372 -18.61644 -17.90532 -17.53602 -17.29314 -17.07055 -16.97222 -16.80062 -16.31471 -16.09951 -15.44960 -15.33439 -15.02261 -14.88720 -14.63059 -14.55086 -14.45793 -14.28114 -14.13013 -13.53185 -13.48321 -13.41278 -13.21984 -13.21589 -13.07590 -12.68791 -12.63584 -12.50510 -12.43959 -12.13487 -11.85114 -11.73044 -11.68047 -11.26875 -11.16639 -10.64447 -10.57330 -10.38059 -9.56596 -9.45696 -9.39664 -8.22169 -6.37431 0.16063 1.35616 1.40196 1.47281 1.68382 1.71599 1.88060 1.94146 2.19973 2.30051 2.44517 3.07075 3.27372 3.40506 3.71110 3.74522 3.84396 4.05960 4.08615 4.12959 4.26894 4.34046 4.39053 4.45223 4.50957 4.56706 4.68870 4.77385 4.83048 4.84908 4.89207 4.95024 5.01607 5.07162 5.13887 5.15303 5.23349 5.41976 5.43773 5.58283 5.81560 5.92075 6.06940 6.21364 6.22050 6.35370 6.70982 6.85089 6.85271 6.98063 7.29084 7.54002 8.84449 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019756 B = 0.001663 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.970389 B =16837.346997 C =17484.652323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.263 3.737 5 C -0.543 4.543 6 H 0.055 0.945 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.490 3.510 14 O -0.590 6.590 15 C 0.062 3.938 16 N -0.694 5.694 17 C 0.061 3.939 18 C 0.125 3.875 19 N -0.707 5.707 20 C 0.596 3.404 21 O -0.569 6.569 22 C -0.098 4.098 23 C 0.054 3.946 24 N -0.533 5.533 25 C 0.251 3.749 26 C -0.074 4.074 27 N -0.535 5.535 28 H 0.440 0.560 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.020 0.980 35 H -0.007 1.007 36 H 0.266 0.734 37 H 0.086 0.914 38 H 0.126 0.874 39 H 0.346 0.654 40 H 0.062 0.938 41 H 0.101 0.899 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.414 0.586 45 H 0.178 0.822 46 H 0.102 0.898 47 H 0.096 0.904 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.069 -18.425 27.739 34.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.141 3.859 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.183 1.183 11 H -0.205 1.205 12 H -0.204 1.204 13 C 0.279 3.721 14 O -0.470 6.470 15 C -0.069 4.069 16 N -0.327 5.327 17 C -0.068 4.068 18 C 0.000 4.000 19 N -0.359 5.359 20 C 0.383 3.617 21 O -0.447 6.447 22 C -0.215 4.215 23 C -0.100 4.100 24 N -0.254 5.254 25 C -0.013 4.013 26 C -0.132 4.132 27 N -0.142 5.142 28 H 0.283 0.717 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.038 0.962 35 H 0.011 0.989 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.144 0.856 39 H 0.164 0.836 40 H 0.080 0.920 41 H 0.119 0.881 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.251 0.749 45 H 0.195 0.805 46 H 0.121 0.879 47 H 0.114 0.886 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.176 -16.520 28.297 33.771 hybrid contribution 1.451 -0.445 -2.078 2.574 sum -6.725 -16.965 26.219 31.945 Atomic orbital electron populations 1.22161 0.94656 1.03490 1.01654 1.21766 0.95246 0.81224 1.04030 1.48282 1.64079 1.15161 1.06112 1.18657 0.95192 0.91420 0.80626 1.21697 0.97936 1.32026 1.06498 0.92683 1.25883 1.02393 0.94517 0.96512 1.70054 1.37824 1.34166 1.14785 0.85470 0.78999 0.79043 0.77295 1.18302 1.20515 1.20398 1.21374 0.77398 0.86692 0.86685 1.90661 1.47724 1.20648 1.87944 1.21806 1.04706 0.93916 0.86518 1.59914 1.32786 1.38802 1.01168 1.22060 1.03499 0.94878 0.86330 1.21156 1.01326 0.96268 0.81206 1.45493 1.67833 1.17817 1.04771 1.16994 0.77076 0.85052 0.82608 1.90876 1.47901 1.18712 1.87249 1.20784 1.16867 0.88245 0.95585 1.22805 0.99902 0.99969 0.87300 1.70231 1.20137 1.01055 1.33974 1.24303 0.98653 0.98184 0.80200 1.20568 1.03310 0.88049 1.01311 1.43091 1.50017 1.11696 1.09398 0.71738 0.91909 0.94719 0.88508 0.91216 0.87697 0.96189 0.98927 0.92476 0.89612 0.85614 0.83554 0.91963 0.88112 0.91938 0.92334 0.74939 0.80489 0.87950 0.88572 0.87310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 10.24 71.98 0.74 -2.84 16 2 C 0.10 2.74 5.93 86.38 0.51 3.25 16 3 N -0.60 -24.55 2.46 -826.14 -2.03 -26.58 16 4 C 0.26 14.16 5.16 85.63 0.44 14.60 16 5 C -0.54 -31.17 9.39 25.60 0.24 -30.93 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.34 5.46 84.65 0.46 0.80 16 8 N -0.93 -56.59 13.29 21.45 0.28 -56.31 16 9 Si 0.97 44.83 29.54 68.60 2.03 46.86 16 10 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 C 0.49 19.45 7.71 87.65 0.68 20.12 16 14 O -0.59 -30.47 15.78 -3.06 -0.05 -30.52 16 15 C 0.06 1.48 4.72 85.56 0.40 1.89 16 16 N -0.69 -16.66 6.12 -517.93 -3.17 -19.83 16 17 C 0.06 0.83 5.80 86.30 0.50 1.33 16 18 C 0.12 2.19 5.93 86.38 0.51 2.70 16 19 N -0.71 -9.23 5.55 -467.02 -2.59 -11.82 16 20 C 0.60 12.07 7.79 86.47 0.67 12.75 16 21 O -0.57 -17.13 16.90 -4.28 -0.07 -17.20 16 22 C -0.10 -1.64 7.08 40.01 0.28 -1.36 16 23 C 0.05 1.10 11.66 84.10 0.98 2.08 16 24 N -0.53 -10.01 11.20 -187.40 -2.10 -12.11 16 25 C 0.25 2.65 8.12 138.20 1.12 3.77 16 26 C -0.07 -0.09 10.51 71.24 0.75 0.66 16 27 N -0.53 -4.28 6.07 -176.11 -1.07 -5.35 16 28 H 0.44 -0.30 8.32 -92.71 -0.77 -1.07 16 29 H 0.06 1.25 7.22 -2.39 -0.02 1.23 16 30 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 2.10 8.07 -2.38 -0.02 2.08 16 33 H 0.10 2.00 6.44 -2.39 -0.02 1.98 16 34 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 35 H -0.01 -0.47 7.42 -2.38 -0.02 -0.49 16 36 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.09 1.55 7.40 -2.38 -0.02 1.53 16 38 H 0.13 2.27 7.19 -2.39 -0.02 2.25 16 39 H 0.35 9.55 8.43 -89.70 -0.76 8.80 16 40 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.41 1.84 7.72 -92.70 -0.72 1.12 16 45 H 0.18 3.57 8.06 -2.91 -0.02 3.54 16 46 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 16 47 H 0.10 0.20 8.14 -2.38 -0.02 0.18 16 48 H 0.11 -0.48 8.14 -2.39 -0.02 -0.50 16 Total: -1.00 -91.21 407.46 -1.72 -92.92 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -1.24 Total: 11.12 kcal Atomic # 6 Polarization: 20.54 SS G_CDS: 8.29 Total: 28.83 kcal Atomic # 7 Polarization: -121.32 SS G_CDS: -10.68 Total: -132.00 kcal Atomic # 8 Polarization: -47.61 SS G_CDS: -0.12 Total: -47.73 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -91.21 -1.72 -92.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124819223.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.088 kcal (2) G-P(sol) polarization free energy of solvation -91.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds