Wall clock time and date at job start Tue Mar 31 2020 20:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46730 * 2 1 4 4 C 1.46505 * 120.00011 * 270.00048 * 3 2 1 5 5 C 1.50700 * 109.46867 * 269.99857 * 4 3 2 6 6 H 1.08004 * 119.99959 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99538 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99368 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00265 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46935 * 89.99991 * 9 7 5 11 11 H 1.48497 * 109.46974 * 209.99889 * 9 7 5 12 12 H 1.48495 * 109.46968 * 329.99605 * 9 7 5 13 13 C 1.34779 * 119.99938 * 90.00050 * 3 2 1 14 14 O 1.21278 * 119.99574 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99999 * 359.97438 * 13 3 2 16 16 N 1.46895 * 109.46709 * 180.02562 * 15 13 3 17 17 C 1.46902 * 110.99702 * 180.02562 * 16 15 13 18 18 C 1.53006 * 109.47221 * 179.97438 * 17 16 15 19 19 N 1.46497 * 109.46903 * 179.97438 * 18 17 16 20 20 C 1.34787 * 119.99650 * 180.02562 * 19 18 17 21 21 O 1.21275 * 119.99611 * 0.02562 * 20 19 18 22 22 C 1.50697 * 119.99828 * 180.02562 * 20 19 18 23 23 C 1.50698 * 109.47030 * 179.97438 * 22 20 19 24 24 C 1.39870 * 125.89873 * 124.99889 * 23 22 20 25 25 C 1.35318 * 107.92236 * 179.76106 * 24 23 22 26 26 N 1.34948 * 107.74290 * 0.42279 * 25 24 23 27 27 H 0.97001 * 126.03958 * 179.84649 * 26 25 24 28 28 N 1.30835 * 125.89830 * 305.02686 * 23 22 20 29 29 H 1.09000 * 109.47414 * 60.00129 * 1 2 3 30 30 H 1.09002 * 109.46465 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47217 * 299.99463 * 1 2 3 32 32 H 1.09001 * 109.47217 * 240.00537 * 2 1 3 33 33 H 1.09000 * 109.47414 * 119.99871 * 2 1 3 34 34 H 1.08994 * 109.46925 * 29.99874 * 4 3 2 35 35 H 1.08996 * 109.46757 * 149.99979 * 4 3 2 36 36 H 0.97004 * 119.99500 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.46914 * 60.00059 * 15 13 3 38 38 H 1.09002 * 109.46963 * 300.00218 * 15 13 3 39 39 H 1.00899 * 111.00453 * 303.95048 * 16 15 13 40 40 H 1.09001 * 109.47360 * 60.00218 * 17 16 15 41 41 H 1.08996 * 109.47280 * 299.99888 * 17 16 15 42 42 H 1.09001 * 109.46656 * 59.99933 * 18 17 16 43 43 H 1.08996 * 109.47021 * 300.00193 * 18 17 16 44 44 H 0.97003 * 120.00382 * 0.02562 * 19 18 17 45 45 H 1.09002 * 109.47553 * 59.99600 * 22 20 19 46 46 H 1.09004 * 109.47119 * 300.00033 * 22 20 19 47 47 H 1.08008 * 126.03860 * 0.02562 * 24 23 22 48 48 H 1.07999 * 126.12849 * 180.26834 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0720 -1.2688 5 6 3.6857 1.8352 -1.7037 6 1 4.3426 1.2305 -1.0961 7 6 4.1489 2.3899 -2.8780 8 7 5.3910 2.1829 -3.2578 9 14 3.0125 3.4353 -3.9292 10 1 3.1159 4.8556 -3.5081 11 1 3.4055 3.3121 -5.3560 12 1 1.6129 2.9692 -3.7593 13 6 2.2429 2.0167 1.1672 14 8 2.6466 3.1603 1.1672 15 6 1.9912 1.3064 2.4723 16 7 2.3089 2.2066 3.5888 17 6 2.0755 1.5463 4.8802 18 6 2.4172 2.5127 6.0162 19 7 2.1839 1.8543 7.3040 20 6 2.4183 2.5191 8.4528 21 8 2.8219 3.6622 8.4204 22 6 2.1789 1.8417 9.7775 23 6 2.5154 2.7935 10.8964 24 6 1.6626 3.1659 11.9407 25 6 2.3336 4.0284 12.7388 26 7 3.5640 4.2031 12.2129 27 1 4.2631 4.7710 12.5729 28 7 3.6554 3.4146 11.0585 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5816 1.6878 -2.0284 35 1 2.0953 3.1411 -1.1384 36 1 5.7170 2.5734 -4.0838 37 1 2.6211 0.4188 2.5302 38 1 0.9431 1.0126 2.5298 39 1 3.2572 2.5448 3.5222 40 1 2.7067 0.6608 4.9548 41 1 1.0283 1.2534 4.9545 42 1 1.7864 3.3984 5.9417 43 1 3.4646 2.8052 5.9417 44 1 1.8608 0.9401 7.3299 45 1 2.8100 0.9561 9.8522 46 1 1.1316 1.5487 9.8518 47 1 0.6491 2.8221 12.0868 48 1 1.9518 4.4953 13.6347 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001125141145.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:55 Heat of formation + Delta-G solvation = 11.254982 kcal Electronic energy + Delta-G solvation = -27678.708594 eV Core-core repulsion = 23577.724185 eV Total energy + Delta-G solvation = -4100.984409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.51553 -39.72621 -39.22399 -36.58469 -35.35930 -34.32652 -33.31960 -32.69807 -30.46935 -30.26478 -30.10976 -28.73687 -27.59422 -25.25586 -22.98508 -22.59682 -21.98171 -21.88981 -21.08666 -19.84541 -18.48007 -18.42706 -17.32654 -16.92281 -16.48051 -16.41196 -16.22691 -15.67695 -15.44958 -14.90813 -14.60882 -14.36530 -14.16697 -13.88270 -13.72571 -13.64240 -13.48783 -13.35681 -13.29295 -13.01527 -12.50978 -12.47291 -12.28098 -12.16273 -11.84258 -11.65893 -11.54722 -11.34826 -10.96151 -10.95021 -10.72786 -10.48720 -10.14578 -10.13593 -9.70913 -9.53612 -9.27599 -9.05910 -9.03702 -8.57902 -8.44406 -7.71039 -6.08116 -4.06808 1.59434 2.32364 2.47163 2.55708 2.94287 3.30413 3.35805 3.36362 3.38753 3.70258 4.17640 4.32472 4.40747 4.43619 4.60944 4.74953 4.80133 4.90475 4.99523 5.03005 5.19885 5.23819 5.25781 5.26269 5.37583 5.39392 5.44996 5.56308 5.60741 5.72210 5.73746 5.82279 5.95198 6.13883 6.16936 6.24114 6.38491 6.65659 6.83443 6.94579 6.99059 7.24142 7.30175 7.36889 7.37031 7.62395 8.03687 8.26870 8.47728 8.93473 9.01127 9.52478 11.05261 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022990 B = 0.001578 C = 0.001516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.605035 B =17742.389119 C =18467.402100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.217 3.783 5 C -0.529 4.529 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.506 3.494 14 O -0.526 6.526 15 C 0.044 3.956 16 N -0.670 5.670 17 C 0.051 3.949 18 C 0.121 3.879 19 N -0.732 5.732 20 C 0.513 3.487 21 O -0.519 6.519 22 C -0.059 4.059 23 C 0.083 3.917 24 C -0.267 4.267 25 C 0.054 3.946 26 N -0.477 5.477 27 H 0.439 0.561 28 N -0.261 5.261 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.029 0.971 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.056 0.944 38 H 0.096 0.904 39 H 0.356 0.644 40 H 0.036 0.964 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.400 0.600 45 H 0.111 0.889 46 H 0.114 0.886 47 H 0.148 0.852 48 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.885 -6.837 30.212 33.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.097 3.903 5 C -0.568 4.568 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.704 3.296 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.292 3.708 14 O -0.402 6.402 15 C -0.088 4.088 16 N -0.304 5.304 17 C -0.079 4.079 18 C -0.003 4.003 19 N -0.385 5.385 20 C 0.298 3.702 21 O -0.393 6.393 22 C -0.101 4.101 23 C -0.085 4.085 24 C -0.297 4.297 25 C -0.093 4.093 26 N -0.185 5.185 27 H 0.283 0.717 28 N -0.084 5.084 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.114 0.886 39 H 0.176 0.824 40 H 0.054 0.946 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.233 0.767 45 H 0.129 0.871 46 H 0.132 0.868 47 H 0.166 0.834 48 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -10.686 -4.822 29.539 31.780 hybrid contribution -0.378 -0.440 -0.095 0.587 sum -11.064 -5.261 29.443 31.890 Atomic orbital electron populations 1.22240 0.96756 1.01524 1.02327 1.21439 0.93413 0.83920 1.03019 1.47933 1.64457 1.13334 1.06982 1.19631 0.97209 0.93440 0.80056 1.21335 0.95395 1.32909 1.07113 0.90851 1.24862 0.95008 0.95789 0.97368 1.69904 1.15149 1.45011 1.23577 0.86839 0.81440 0.81656 0.79695 1.19879 1.21101 1.19074 1.20177 0.78701 0.87079 0.84865 1.90688 1.44831 1.17763 1.86888 1.21874 1.02439 0.94314 0.90195 1.59988 1.33240 1.37486 0.99687 1.22073 1.01632 0.95138 0.89057 1.21242 1.02241 0.96132 0.80716 1.45853 1.69306 1.17590 1.05783 1.20358 0.77784 0.86884 0.85173 1.90781 1.43660 1.17592 1.87295 1.20020 1.04525 0.97105 0.88424 1.21537 0.92251 0.98331 0.96390 1.21389 1.02315 1.07267 0.98704 1.22573 0.86770 0.99877 1.00082 1.46401 1.13090 1.38072 1.20929 0.71719 1.77420 1.22127 1.08351 1.00534 0.92185 0.92020 0.92920 0.89734 0.91570 0.95295 0.94565 0.92579 0.92583 0.88582 0.82389 0.94625 0.90357 0.90254 0.91293 0.76666 0.87140 0.86790 0.83420 0.80687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.24 37.16 0.38 -1.66 16 2 C 0.11 1.58 5.93 -4.04 -0.02 1.55 16 3 N -0.59 -11.94 2.46 -175.05 -0.43 -12.37 16 4 C 0.22 5.31 4.23 -5.19 -0.02 5.28 16 5 C -0.53 -15.22 9.94 -34.44 -0.34 -15.56 16 6 H 0.07 2.30 8.06 -52.48 -0.42 1.88 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.81 13.96 55.43 0.77 -27.03 16 9 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 10 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 13 C 0.51 10.11 7.71 -10.98 -0.08 10.03 16 14 O -0.53 -12.99 15.78 5.56 0.09 -12.90 16 15 C 0.04 0.61 4.72 -4.98 -0.02 0.59 16 16 N -0.67 -9.09 6.13 -115.06 -0.70 -9.80 16 17 C 0.05 0.47 5.80 -3.82 -0.02 0.45 16 18 C 0.12 1.24 5.93 -4.04 -0.02 1.22 16 19 N -0.73 -5.79 5.56 -60.29 -0.33 -6.13 16 20 C 0.51 5.31 7.82 -10.98 -0.09 5.23 16 21 O -0.52 -8.12 15.56 5.56 0.09 -8.03 16 22 C -0.06 -0.40 6.28 -29.04 -0.18 -0.58 16 23 C 0.08 0.80 6.02 -82.41 -0.50 0.31 16 24 C -0.27 -2.00 10.72 -40.01 -0.43 -2.43 16 25 C 0.05 0.34 11.99 -17.22 -0.21 0.13 16 26 N -0.48 -3.81 7.36 30.45 0.22 -3.59 16 27 H 0.44 2.15 8.96 -182.60 -1.64 0.51 16 28 N -0.26 -3.07 12.05 33.67 0.41 -2.66 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.60 7.22 -51.93 -0.37 0.22 16 32 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 33 H 0.07 0.81 6.44 -51.93 -0.33 0.47 16 34 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 35 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.06 0.69 7.40 -51.93 -0.38 0.30 16 38 H 0.10 1.12 7.18 -51.93 -0.37 0.75 16 39 H 0.36 5.29 8.43 -39.29 -0.33 4.96 16 40 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.40 1.70 8.47 -40.82 -0.35 1.36 16 45 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.11 0.39 8.12 -51.93 -0.42 -0.04 16 47 H 0.15 0.73 8.06 -52.48 -0.42 0.30 16 48 H 0.18 0.37 8.06 -52.49 -0.42 -0.05 16 LS Contribution 403.62 15.07 6.08 6.08 Total: -1.00 -41.27 403.62 -8.88 -50.15 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -8.74 Total: 2.61 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -1.66 Total: 6.58 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: -0.07 Total: -61.58 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: 0.17 Total: -20.93 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -41.27 -8.88 -50.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125141145.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.410 kcal (2) G-P(sol) polarization free energy of solvation -41.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds