Wall clock time and date at job start Tue Mar 31 2020 20:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46730 * 2 1 4 4 C 1.46505 * 120.00011 * 270.00048 * 3 2 1 5 5 C 1.50700 * 109.46867 * 269.99857 * 4 3 2 6 6 H 1.08004 * 119.99959 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99538 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99368 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00265 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46935 * 89.99991 * 9 7 5 11 11 H 1.48497 * 109.46974 * 209.99889 * 9 7 5 12 12 H 1.48495 * 109.46968 * 329.99605 * 9 7 5 13 13 C 1.34779 * 119.99938 * 90.00050 * 3 2 1 14 14 O 1.21278 * 119.99574 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99999 * 359.97438 * 13 3 2 16 16 N 1.46895 * 109.46709 * 180.02562 * 15 13 3 17 17 C 1.46902 * 110.99702 * 180.02562 * 16 15 13 18 18 C 1.53006 * 109.47221 * 179.97438 * 17 16 15 19 19 N 1.46497 * 109.46903 * 179.97438 * 18 17 16 20 20 C 1.34787 * 119.99650 * 180.02562 * 19 18 17 21 21 O 1.21275 * 119.99611 * 0.02562 * 20 19 18 22 22 C 1.50697 * 119.99828 * 180.02562 * 20 19 18 23 23 C 1.50698 * 109.47030 * 179.97438 * 22 20 19 24 24 C 1.39870 * 125.89873 * 124.99889 * 23 22 20 25 25 C 1.35318 * 107.92236 * 179.76106 * 24 23 22 26 26 N 1.34948 * 107.74290 * 0.42279 * 25 24 23 27 27 H 0.97001 * 126.03958 * 179.84649 * 26 25 24 28 28 N 1.30835 * 125.89830 * 305.02686 * 23 22 20 29 29 H 1.09000 * 109.47414 * 60.00129 * 1 2 3 30 30 H 1.09002 * 109.46465 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47217 * 299.99463 * 1 2 3 32 32 H 1.09001 * 109.47217 * 240.00537 * 2 1 3 33 33 H 1.09000 * 109.47414 * 119.99871 * 2 1 3 34 34 H 1.08994 * 109.46925 * 29.99874 * 4 3 2 35 35 H 1.08996 * 109.46757 * 149.99979 * 4 3 2 36 36 H 0.97004 * 119.99500 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.46914 * 60.00059 * 15 13 3 38 38 H 1.09002 * 109.46963 * 300.00218 * 15 13 3 39 39 H 1.00899 * 111.00453 * 303.95048 * 16 15 13 40 40 H 1.09001 * 109.47360 * 60.00218 * 17 16 15 41 41 H 1.08996 * 109.47280 * 299.99888 * 17 16 15 42 42 H 1.09001 * 109.46656 * 59.99933 * 18 17 16 43 43 H 1.08996 * 109.47021 * 300.00193 * 18 17 16 44 44 H 0.97003 * 120.00382 * 0.02562 * 19 18 17 45 45 H 1.09002 * 109.47553 * 59.99600 * 22 20 19 46 46 H 1.09004 * 109.47119 * 300.00033 * 22 20 19 47 47 H 1.08008 * 126.03860 * 0.02562 * 24 23 22 48 48 H 1.07999 * 126.12849 * 180.26834 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0720 -1.2688 5 6 3.6857 1.8352 -1.7037 6 1 4.3426 1.2305 -1.0961 7 6 4.1489 2.3899 -2.8780 8 7 5.3910 2.1829 -3.2578 9 14 3.0125 3.4353 -3.9292 10 1 3.1159 4.8556 -3.5081 11 1 3.4055 3.3121 -5.3560 12 1 1.6129 2.9692 -3.7593 13 6 2.2429 2.0167 1.1672 14 8 2.6466 3.1603 1.1672 15 6 1.9912 1.3064 2.4723 16 7 2.3089 2.2066 3.5888 17 6 2.0755 1.5463 4.8802 18 6 2.4172 2.5127 6.0162 19 7 2.1839 1.8543 7.3040 20 6 2.4183 2.5191 8.4528 21 8 2.8219 3.6622 8.4204 22 6 2.1789 1.8417 9.7775 23 6 2.5154 2.7935 10.8964 24 6 1.6626 3.1659 11.9407 25 6 2.3336 4.0284 12.7388 26 7 3.5640 4.2031 12.2129 27 1 4.2631 4.7710 12.5729 28 7 3.6554 3.4146 11.0585 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5816 1.6878 -2.0284 35 1 2.0953 3.1411 -1.1384 36 1 5.7170 2.5734 -4.0838 37 1 2.6211 0.4188 2.5302 38 1 0.9431 1.0126 2.5298 39 1 3.2572 2.5448 3.5222 40 1 2.7067 0.6608 4.9548 41 1 1.0283 1.2534 4.9545 42 1 1.7864 3.3984 5.9417 43 1 3.4646 2.8052 5.9417 44 1 1.8608 0.9401 7.3299 45 1 2.8100 0.9561 9.8522 46 1 1.1316 1.5487 9.8518 47 1 0.6491 2.8221 12.0868 48 1 1.9518 4.4953 13.6347 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001125141145.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:54 Heat of formation + Delta-G solvation = -24.378240 kcal Electronic energy + Delta-G solvation = -27680.253766 eV Core-core repulsion = 23577.724185 eV Total energy + Delta-G solvation = -4102.529581 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.07299 -40.79396 -40.47606 -37.59726 -36.87886 -35.31626 -34.80491 -33.91318 -31.95263 -31.05737 -30.80226 -29.86693 -28.85392 -26.51837 -24.37835 -23.77769 -23.16054 -22.59884 -21.77629 -20.49500 -19.90603 -19.10698 -18.97831 -18.21082 -17.73528 -17.48259 -17.17859 -16.85529 -16.52354 -16.25645 -15.65476 -15.33457 -15.18813 -15.02253 -14.69787 -14.58839 -14.47324 -14.35915 -14.35208 -14.16971 -13.70895 -13.66555 -13.44093 -13.29790 -13.13910 -12.95222 -12.62037 -12.52899 -12.39193 -12.32401 -12.03203 -11.85781 -11.74373 -11.54813 -10.97968 -10.83902 -10.62560 -10.34756 -10.08701 -9.58870 -9.44902 -9.37208 -8.35047 -6.39643 1.05478 1.31226 1.35927 1.43826 1.70501 1.75172 1.84519 2.07789 2.15633 2.30072 2.42849 2.99652 3.34054 3.66041 3.70811 3.87412 3.99802 4.10355 4.13780 4.18794 4.36308 4.40238 4.40361 4.47440 4.54218 4.58592 4.67997 4.81756 4.82726 4.89641 4.90513 4.92733 4.97629 5.04244 5.05094 5.15089 5.41931 5.42933 5.48017 5.66989 5.74264 5.89106 6.20555 6.24504 6.52663 6.61576 6.62024 6.76688 6.80576 7.21757 7.34676 7.47869 8.81808 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022990 B = 0.001578 C = 0.001516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.605035 B =17742.389119 C =18467.402100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.602 5.602 4 C 0.226 3.774 5 C -0.536 4.536 6 H 0.029 0.971 7 C 0.011 3.989 8 N -0.945 5.945 9 Si 0.947 3.053 10 H -0.279 1.279 11 H -0.274 1.274 12 H -0.238 1.238 13 C 0.492 3.508 14 O -0.587 6.587 15 C 0.061 3.939 16 N -0.693 5.693 17 C 0.062 3.938 18 C 0.127 3.873 19 N -0.712 5.712 20 C 0.508 3.492 21 O -0.581 6.581 22 C -0.052 4.052 23 C 0.065 3.935 24 C -0.285 4.285 25 C 0.062 3.938 26 N -0.481 5.481 27 H 0.447 0.553 28 N -0.324 5.324 29 H 0.042 0.958 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.047 0.953 35 H 0.014 0.986 36 H 0.268 0.732 37 H 0.081 0.919 38 H 0.131 0.869 39 H 0.343 0.657 40 H 0.059 0.941 41 H 0.104 0.896 42 H 0.054 0.946 43 H 0.044 0.956 44 H 0.422 0.578 45 H 0.134 0.866 46 H 0.154 0.846 47 H 0.173 0.827 48 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.435 -9.077 31.828 36.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.333 5.333 4 C 0.104 3.896 5 C -0.574 4.574 6 H 0.048 0.952 7 C -0.187 4.187 8 N -0.585 5.585 9 Si 0.770 3.230 10 H -0.205 1.205 11 H -0.199 1.199 12 H -0.161 1.161 13 C 0.281 3.719 14 O -0.467 6.467 15 C -0.071 4.071 16 N -0.326 5.326 17 C -0.067 4.067 18 C 0.002 3.998 19 N -0.367 5.367 20 C 0.295 3.705 21 O -0.460 6.460 22 C -0.093 4.093 23 C -0.103 4.103 24 C -0.315 4.315 25 C -0.085 4.085 26 N -0.191 5.191 27 H 0.292 0.708 28 N -0.148 5.148 29 H 0.062 0.938 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.065 0.935 35 H 0.032 0.968 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.149 0.851 39 H 0.161 0.839 40 H 0.077 0.923 41 H 0.123 0.877 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.260 0.740 45 H 0.152 0.848 46 H 0.171 0.829 47 H 0.191 0.809 48 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -14.291 -7.180 31.176 35.039 hybrid contribution 0.795 0.223 -0.494 0.962 sum -13.496 -6.957 30.682 34.234 Atomic orbital electron populations 1.22164 0.93926 1.03668 1.02102 1.21799 0.95653 0.80953 1.04037 1.48069 1.64353 1.15261 1.05664 1.19248 0.94666 0.92917 0.82808 1.21592 0.97167 1.32018 1.06644 0.95214 1.25845 0.96698 0.97177 0.98999 1.70054 1.17381 1.46604 1.24498 0.85731 0.80545 0.78929 0.77843 1.20481 1.19880 1.16100 1.21365 0.77119 0.86698 0.86707 1.90653 1.47466 1.20660 1.87920 1.21822 1.04859 0.93831 0.86573 1.59992 1.32534 1.38696 1.01378 1.22074 1.03580 0.94822 0.86230 1.21004 1.00242 0.96140 0.82452 1.45647 1.68290 1.18345 1.04383 1.21094 0.76421 0.86251 0.86733 1.90758 1.46568 1.20489 1.88196 1.20187 1.07342 0.96687 0.85121 1.22130 0.92196 0.98426 0.97500 1.21821 1.03412 1.07790 0.98428 1.23306 0.85697 0.98806 1.00671 1.46482 1.14218 1.37970 1.20390 0.70772 1.77327 1.24161 1.10557 1.02774 0.93843 0.88616 0.91743 0.91165 0.88235 0.93461 0.96785 0.92310 0.90121 0.85125 0.83917 0.92302 0.87741 0.92720 0.93761 0.74041 0.84819 0.82858 0.80945 0.76636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 10.24 71.98 0.74 -2.50 16 2 C 0.10 2.66 5.93 86.38 0.51 3.17 16 3 N -0.60 -23.82 2.46 -826.14 -2.03 -25.85 16 4 C 0.23 11.13 4.23 85.63 0.36 11.49 16 5 C -0.54 -31.85 9.94 25.60 0.25 -31.60 16 6 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 7 C 0.01 0.64 5.47 84.65 0.46 1.11 16 8 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 9 Si 0.95 45.31 27.47 68.60 1.88 47.19 16 10 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 13 C 0.49 19.55 7.71 87.66 0.68 20.22 16 14 O -0.59 -30.02 15.78 -3.02 -0.05 -30.06 16 15 C 0.06 1.53 4.72 85.56 0.40 1.93 16 16 N -0.69 -17.97 6.13 -517.93 -3.17 -21.14 16 17 C 0.06 0.98 5.80 86.31 0.50 1.48 16 18 C 0.13 2.56 5.93 86.38 0.51 3.07 16 19 N -0.71 -10.10 5.56 -463.05 -2.57 -12.68 16 20 C 0.51 10.25 7.82 87.65 0.69 10.93 16 21 O -0.58 -19.03 15.56 -3.01 -0.05 -19.08 16 22 C -0.05 -0.60 6.28 29.10 0.18 -0.42 16 23 C 0.06 1.21 6.02 43.10 0.26 1.47 16 24 C -0.29 -3.76 10.72 21.99 0.24 -3.53 16 25 C 0.06 0.67 11.99 83.54 1.00 1.68 16 26 N -0.48 -7.66 7.36 -57.59 -0.42 -8.08 16 27 H 0.45 4.53 8.96 -213.33 -1.91 2.62 16 28 N -0.32 -7.82 12.05 -47.39 -0.57 -8.39 16 29 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.16 7.22 -2.39 -0.02 1.15 16 32 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 33 H 0.10 2.03 6.44 -2.39 -0.02 2.02 16 34 H 0.05 2.14 7.13 -2.39 -0.02 2.13 16 35 H 0.01 0.75 6.85 -2.39 -0.02 0.74 16 36 H 0.27 15.94 8.31 -92.70 -0.77 15.17 16 37 H 0.08 1.66 7.40 -2.39 -0.02 1.65 16 38 H 0.13 2.40 7.18 -2.39 -0.02 2.38 16 39 H 0.34 10.41 8.43 -89.70 -0.76 9.66 16 40 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.05 1.38 8.14 -2.39 -0.02 1.37 16 43 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.42 2.15 8.47 -92.71 -0.79 1.36 16 45 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.15 0.46 8.12 -2.38 -0.02 0.45 16 47 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 48 H 0.22 0.24 8.06 -2.91 -0.02 0.22 16 Total: -1.00 -99.32 403.62 -2.40 -101.71 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -2.51 Total: 18.01 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: 6.79 Total: 18.51 kcal Atomic # 7 Polarization: -127.81 SS G_CDS: -8.47 Total: -136.28 kcal Atomic # 8 Polarization: -49.05 SS G_CDS: -0.09 Total: -49.14 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.88 Total: 47.19 kcal Total: -99.32 -2.40 -101.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125141145.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.337 kcal (2) G-P(sol) polarization free energy of solvation -99.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds