Wall clock time and date at job start Tue Mar 31 2020 20:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47160 * 2 1 4 4 C 1.46495 * 120.00157 * 270.00403 * 3 2 1 5 5 C 1.50697 * 109.46948 * 269.99814 * 4 3 2 6 6 H 1.08004 * 120.00176 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00105 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99951 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00121 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46773 * 89.99786 * 9 7 5 11 11 H 1.48490 * 109.47530 * 210.00183 * 9 7 5 12 12 H 1.48504 * 109.46859 * 330.00553 * 9 7 5 13 13 C 1.34775 * 119.99661 * 90.00095 * 3 2 1 14 14 O 1.21282 * 119.99690 * 180.02562 * 13 3 2 15 15 C 1.50697 * 120.00111 * 0.02562 * 13 3 2 16 16 N 1.46911 * 109.46882 * 180.02562 * 15 13 3 17 17 C 1.46902 * 110.99964 * 179.97438 * 16 15 13 18 18 C 1.52990 * 109.47160 * 179.97438 * 17 16 15 19 19 N 1.46499 * 109.47304 * 179.97438 * 18 17 16 20 20 C 1.34777 * 120.00195 * 179.97438 * 19 18 17 21 21 O 1.21623 * 119.99973 * 0.02562 * 20 19 18 22 22 C 1.47322 * 119.99921 * 180.27801 * 20 19 18 23 23 C 1.36423 * 126.23809 * 179.72694 * 22 20 19 24 24 N 1.35376 * 106.87577 * 179.97438 * 23 22 20 25 25 C 1.46503 * 126.13670 * 180.02562 * 24 23 22 26 26 C 1.35851 * 107.72711 * 0.02562 * 24 23 22 27 27 N 1.30166 * 109.00315 * 359.74183 * 26 24 23 28 28 H 1.08998 * 109.47070 * 59.99839 * 1 2 3 29 29 H 1.09001 * 109.47009 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47162 * 299.99582 * 1 2 3 31 31 H 1.08995 * 109.46884 * 240.00299 * 2 1 3 32 32 H 1.08998 * 109.47070 * 120.00161 * 2 1 3 33 33 H 1.09006 * 109.46939 * 29.99657 * 4 3 2 34 34 H 1.08995 * 109.47176 * 149.99482 * 4 3 2 35 35 H 0.97007 * 119.99276 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47561 * 60.00379 * 15 13 3 37 37 H 1.08999 * 109.47422 * 299.99319 * 15 13 3 38 38 H 1.00896 * 110.99367 * 303.94990 * 16 15 13 39 39 H 1.09006 * 109.46860 * 59.99762 * 17 16 15 40 40 H 1.09002 * 109.47118 * 300.00204 * 17 16 15 41 41 H 1.08998 * 109.47186 * 60.00066 * 18 17 16 42 42 H 1.08997 * 109.47401 * 299.99985 * 18 17 16 43 43 H 0.97000 * 120.00069 * 0.02562 * 19 18 17 44 44 H 1.08001 * 126.56329 * 359.95872 * 23 22 20 45 45 H 1.08996 * 109.46788 * 90.00322 * 25 24 23 46 46 H 1.08999 * 109.47088 * 210.00265 * 25 24 23 47 47 H 1.08993 * 109.46749 * 329.99855 * 25 24 23 48 48 H 1.08002 * 125.49397 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0962 7 6 4.1490 2.3898 -2.8779 8 7 5.3910 2.1827 -3.2578 9 14 3.0123 3.4341 -3.9299 10 1 3.1146 4.8546 -3.5091 11 1 3.4057 3.3109 -5.3564 12 1 1.6128 2.9672 -3.7601 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9924 1.3059 2.4723 16 7 2.3099 2.2062 3.5889 17 6 2.0764 1.5459 4.8803 18 6 2.4180 2.5122 6.0162 19 7 2.1845 1.8540 7.3040 20 6 2.4198 2.5184 8.4528 21 8 2.8254 3.6645 8.4204 22 6 2.1908 1.8544 9.7478 23 6 2.3909 2.4017 10.9813 24 7 2.0592 1.4547 11.8900 25 6 2.1163 1.5978 13.3469 26 6 1.6639 0.3480 11.2086 27 7 1.7374 0.5879 9.9313 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5816 1.6877 -2.0283 34 1 2.0954 3.1411 -1.1383 35 1 5.7170 2.5733 -4.0838 36 1 2.6229 0.4186 2.5299 37 1 0.9445 1.0114 2.5303 38 1 3.2580 2.5449 3.5218 39 1 2.7076 0.6603 4.9549 40 1 1.0292 1.2530 4.9544 41 1 1.7872 3.3980 5.9417 42 1 3.4653 2.8047 5.9418 43 1 1.8614 0.9398 7.3299 44 1 2.7463 3.3995 11.1924 45 1 1.1619 1.9765 13.7125 46 1 2.3194 0.6272 13.7996 47 1 2.9101 2.2958 13.6126 48 1 1.3366 -0.5795 11.6547 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001125676673.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:12 Heat of formation + Delta-G solvation = 0.629160 kcal Electronic energy + Delta-G solvation = -27744.433461 eV Core-core repulsion = 23642.988282 eV Total energy + Delta-G solvation = -4101.445179 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.61144 -39.49174 -39.15926 -36.49301 -35.31556 -34.71002 -34.15512 -32.67331 -30.50306 -30.30453 -29.65506 -28.09963 -27.44847 -25.41052 -23.46624 -22.94771 -22.16405 -21.85412 -21.59700 -20.31675 -18.54009 -18.20264 -16.89939 -16.67695 -16.45310 -16.30754 -16.24201 -16.10781 -15.49608 -15.17000 -14.77395 -14.42522 -14.27242 -14.10189 -13.94248 -13.58277 -13.45766 -13.43425 -13.40459 -13.23475 -13.05908 -12.46014 -12.27939 -12.14255 -11.80661 -11.61250 -11.50307 -11.31236 -10.93027 -10.78118 -10.69317 -10.46325 -10.28527 -10.26537 -10.12132 -9.51119 -9.28020 -8.99654 -8.98496 -8.55720 -8.38287 -7.67554 -6.05912 -4.04446 1.20841 2.00365 2.10288 2.97365 3.32068 3.32354 3.38293 3.39857 3.40772 3.74125 3.98676 4.05642 4.28920 4.42435 4.42904 4.44191 4.69669 4.70778 4.83056 4.95143 5.05830 5.08546 5.24545 5.28616 5.33330 5.44803 5.50474 5.51925 5.60521 5.76289 5.79786 5.86427 5.97688 5.99620 6.17354 6.26973 6.42263 6.48790 6.69485 6.88010 7.02301 7.19623 7.36702 7.40524 7.49813 7.64880 8.09782 8.30497 8.50249 8.96061 9.04780 9.54813 11.07486 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025758 B = 0.001606 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.791135 B =17434.463334 C =18020.257396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.217 3.783 5 C -0.528 4.528 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.507 3.493 14 O -0.526 6.526 15 C 0.044 3.956 16 N -0.670 5.670 17 C 0.051 3.949 18 C 0.120 3.880 19 N -0.715 5.715 20 C 0.603 3.397 21 O -0.543 6.543 22 C -0.063 4.063 23 C 0.034 3.966 24 N -0.462 5.462 25 C 0.069 3.931 26 C 0.185 3.815 27 N -0.464 5.464 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.029 0.971 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.356 0.644 39 H 0.036 0.964 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.408 0.592 44 H 0.189 0.811 45 H 0.082 0.918 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.870 -8.322 32.902 35.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.097 3.903 5 C -0.567 4.567 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.704 3.296 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.292 3.708 14 O -0.402 6.402 15 C -0.089 4.089 16 N -0.303 5.303 17 C -0.079 4.079 18 C -0.004 4.004 19 N -0.366 5.366 20 C 0.389 3.611 21 O -0.420 6.420 22 C -0.192 4.192 23 C -0.105 4.105 24 N -0.144 5.144 25 C -0.073 4.073 26 C -0.099 4.099 27 N -0.183 5.183 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.114 0.886 38 H 0.176 0.824 39 H 0.055 0.945 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.243 0.757 44 H 0.206 0.794 45 H 0.100 0.900 46 H 0.111 0.889 47 H 0.108 0.892 48 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -11.033 -7.059 32.157 34.723 hybrid contribution 0.313 -0.214 0.116 0.396 sum -10.721 -7.273 32.273 34.776 Atomic orbital electron populations 1.22240 0.96766 1.01524 1.02323 1.21437 0.93413 0.83923 1.03021 1.47926 1.64479 1.13338 1.06974 1.19627 0.97187 0.93445 0.80081 1.21341 0.95407 1.32850 1.07097 0.90847 1.24858 0.95002 0.95796 0.97364 1.69905 1.15166 1.45043 1.23577 0.86840 0.81458 0.81650 0.79680 1.19882 1.21121 1.19075 1.20179 0.78658 0.87072 0.84860 1.90685 1.44846 1.17764 1.86900 1.21877 1.02479 0.94333 0.90163 1.59982 1.33206 1.37483 0.99670 1.22066 1.01791 0.95153 0.88920 1.21277 1.02277 0.96179 0.80627 1.45650 1.67724 1.17981 1.05258 1.16840 0.77130 0.84918 0.82184 1.90826 1.46699 1.17172 1.87278 1.20572 1.12052 0.92989 0.93548 1.22640 1.03370 0.96149 0.88336 1.45367 1.48550 1.12298 1.08144 1.22171 1.04294 1.04870 0.75948 1.25211 1.04197 0.93114 0.87338 1.70594 1.17336 1.14447 1.15937 0.92205 0.92029 0.92897 0.89754 0.91543 0.95312 0.94559 0.92600 0.92568 0.88577 0.82428 0.94542 0.90287 0.90064 0.91129 0.75722 0.79392 0.89966 0.88912 0.89154 0.77119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 37.16 0.38 -1.75 16 2 C 0.11 1.63 5.93 -4.04 -0.02 1.61 16 3 N -0.59 -12.19 2.46 -175.06 -0.43 -12.62 16 4 C 0.22 5.37 4.23 -5.20 -0.02 5.35 16 5 C -0.53 -15.33 9.94 -34.44 -0.34 -15.67 16 6 H 0.07 2.33 8.06 -52.48 -0.42 1.90 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 9 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 10 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 13 C 0.51 10.35 7.71 -10.99 -0.08 10.27 16 14 O -0.53 -13.16 15.78 5.56 0.09 -13.07 16 15 C 0.04 0.64 4.72 -4.97 -0.02 0.62 16 16 N -0.67 -9.57 6.13 -115.05 -0.70 -10.27 16 17 C 0.05 0.54 5.80 -3.83 -0.02 0.52 16 18 C 0.12 1.39 5.93 -4.05 -0.02 1.37 16 19 N -0.71 -7.81 5.55 -61.42 -0.34 -8.16 16 20 C 0.60 7.68 7.81 -12.57 -0.10 7.58 16 21 O -0.54 -8.56 16.88 5.26 0.09 -8.47 16 22 C -0.06 -0.66 6.98 -83.09 -0.58 -1.24 16 23 C 0.03 0.27 11.26 -16.64 -0.19 0.08 16 24 N -0.46 -2.31 3.13 -125.78 -0.39 -2.70 16 25 C 0.07 0.03 11.15 59.85 0.67 0.70 16 26 C 0.19 1.09 12.55 -89.91 -1.13 -0.04 16 27 N -0.46 -4.38 11.01 -11.03 -0.12 -4.50 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.63 7.22 -51.92 -0.38 0.25 16 31 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 32 H 0.07 0.85 6.44 -51.93 -0.33 0.51 16 33 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 34 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 35 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 36 H 0.06 0.73 7.40 -51.93 -0.38 0.35 16 37 H 0.10 1.20 7.19 -51.93 -0.37 0.82 16 38 H 0.36 5.46 8.43 -39.29 -0.33 5.13 16 39 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.41 3.79 8.19 -40.82 -0.33 3.45 16 44 H 0.19 1.18 8.06 -52.49 -0.42 0.75 16 45 H 0.08 -0.03 8.14 -51.93 -0.42 -0.46 16 46 H 0.09 -0.13 8.14 -51.93 -0.42 -0.55 16 47 H 0.09 -0.03 8.14 -51.93 -0.42 -0.46 16 48 H 0.21 0.36 8.06 -52.49 -0.42 -0.06 16 LS Contribution 405.51 15.07 6.11 6.11 Total: -1.00 -39.69 405.51 -8.70 -48.39 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -7.52 Total: 3.84 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: -1.59 Total: 11.40 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: -1.22 Total: -65.45 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: 0.18 Total: -21.54 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -39.69 -8.70 -48.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125676673.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.022 kcal (2) G-P(sol) polarization free energy of solvation -39.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds