Wall clock time and date at job start Tue Mar 31 2020 20:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47160 * 2 1 4 4 C 1.46495 * 120.00157 * 270.00403 * 3 2 1 5 5 C 1.50697 * 109.46948 * 269.99814 * 4 3 2 6 6 H 1.08004 * 120.00176 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00105 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99951 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00121 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46773 * 89.99786 * 9 7 5 11 11 H 1.48490 * 109.47530 * 210.00183 * 9 7 5 12 12 H 1.48504 * 109.46859 * 330.00553 * 9 7 5 13 13 C 1.34775 * 119.99661 * 90.00095 * 3 2 1 14 14 O 1.21282 * 119.99690 * 180.02562 * 13 3 2 15 15 C 1.50697 * 120.00111 * 0.02562 * 13 3 2 16 16 N 1.46911 * 109.46882 * 180.02562 * 15 13 3 17 17 C 1.46902 * 110.99964 * 179.97438 * 16 15 13 18 18 C 1.52990 * 109.47160 * 179.97438 * 17 16 15 19 19 N 1.46499 * 109.47304 * 179.97438 * 18 17 16 20 20 C 1.34777 * 120.00195 * 179.97438 * 19 18 17 21 21 O 1.21623 * 119.99973 * 0.02562 * 20 19 18 22 22 C 1.47322 * 119.99921 * 180.27801 * 20 19 18 23 23 C 1.36423 * 126.23809 * 179.72694 * 22 20 19 24 24 N 1.35376 * 106.87577 * 179.97438 * 23 22 20 25 25 C 1.46503 * 126.13670 * 180.02562 * 24 23 22 26 26 C 1.35851 * 107.72711 * 0.02562 * 24 23 22 27 27 N 1.30166 * 109.00315 * 359.74183 * 26 24 23 28 28 H 1.08998 * 109.47070 * 59.99839 * 1 2 3 29 29 H 1.09001 * 109.47009 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47162 * 299.99582 * 1 2 3 31 31 H 1.08995 * 109.46884 * 240.00299 * 2 1 3 32 32 H 1.08998 * 109.47070 * 120.00161 * 2 1 3 33 33 H 1.09006 * 109.46939 * 29.99657 * 4 3 2 34 34 H 1.08995 * 109.47176 * 149.99482 * 4 3 2 35 35 H 0.97007 * 119.99276 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47561 * 60.00379 * 15 13 3 37 37 H 1.08999 * 109.47422 * 299.99319 * 15 13 3 38 38 H 1.00896 * 110.99367 * 303.94990 * 16 15 13 39 39 H 1.09006 * 109.46860 * 59.99762 * 17 16 15 40 40 H 1.09002 * 109.47118 * 300.00204 * 17 16 15 41 41 H 1.08998 * 109.47186 * 60.00066 * 18 17 16 42 42 H 1.08997 * 109.47401 * 299.99985 * 18 17 16 43 43 H 0.97000 * 120.00069 * 0.02562 * 19 18 17 44 44 H 1.08001 * 126.56329 * 359.95872 * 23 22 20 45 45 H 1.08996 * 109.46788 * 90.00322 * 25 24 23 46 46 H 1.08999 * 109.47088 * 210.00265 * 25 24 23 47 47 H 1.08993 * 109.46749 * 329.99855 * 25 24 23 48 48 H 1.08002 * 125.49397 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0962 7 6 4.1490 2.3898 -2.8779 8 7 5.3910 2.1827 -3.2578 9 14 3.0123 3.4341 -3.9299 10 1 3.1146 4.8546 -3.5091 11 1 3.4057 3.3109 -5.3564 12 1 1.6128 2.9672 -3.7601 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9924 1.3059 2.4723 16 7 2.3099 2.2062 3.5889 17 6 2.0764 1.5459 4.8803 18 6 2.4180 2.5122 6.0162 19 7 2.1845 1.8540 7.3040 20 6 2.4198 2.5184 8.4528 21 8 2.8254 3.6645 8.4204 22 6 2.1908 1.8544 9.7478 23 6 2.3909 2.4017 10.9813 24 7 2.0592 1.4547 11.8900 25 6 2.1163 1.5978 13.3469 26 6 1.6639 0.3480 11.2086 27 7 1.7374 0.5879 9.9313 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5816 1.6877 -2.0283 34 1 2.0954 3.1411 -1.1383 35 1 5.7170 2.5733 -4.0838 36 1 2.6229 0.4186 2.5299 37 1 0.9445 1.0114 2.5303 38 1 3.2580 2.5449 3.5218 39 1 2.7076 0.6603 4.9549 40 1 1.0292 1.2530 4.9544 41 1 1.7872 3.3980 5.9417 42 1 3.4653 2.8047 5.9418 43 1 1.8614 0.9398 7.3299 44 1 2.7463 3.3995 11.1924 45 1 1.1619 1.9765 13.7125 46 1 2.3194 0.6272 13.7996 47 1 2.9101 2.2958 13.6126 48 1 1.3366 -0.5795 11.6547 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001125676673.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:10 Heat of formation + Delta-G solvation = -30.879922 kcal Electronic energy + Delta-G solvation = -27745.799797 eV Core-core repulsion = 23642.988282 eV Total energy + Delta-G solvation = -4102.811515 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.11784 -40.79244 -40.36535 -37.60633 -36.88031 -35.43994 -34.96157 -34.76664 -31.95691 -31.18029 -30.57249 -29.49460 -28.04428 -26.65235 -24.48442 -24.24187 -23.50655 -23.00322 -22.06909 -21.11894 -19.93686 -19.10492 -18.93774 -17.93691 -17.51412 -17.27517 -17.08821 -16.82972 -16.79206 -16.34905 -16.09195 -15.37324 -15.25269 -15.04775 -14.85036 -14.81268 -14.67063 -14.50128 -14.37673 -14.25766 -13.70860 -13.62688 -13.49216 -13.43209 -13.30428 -13.13629 -12.66174 -12.52937 -12.44997 -12.33253 -12.02779 -11.86578 -11.73750 -11.46924 -11.14187 -10.83189 -10.71980 -10.62726 -10.20813 -9.61490 -9.46994 -9.37533 -8.34323 -6.38964 0.54654 1.31990 1.36658 1.44630 1.44643 1.71218 1.83993 2.07869 2.30833 2.38576 2.51103 3.00319 3.28560 3.46642 3.70005 3.82745 3.92041 4.01190 4.08657 4.13319 4.22543 4.34538 4.39232 4.46016 4.46738 4.49802 4.52880 4.67390 4.78196 4.81572 4.87572 4.90021 4.94521 5.03310 5.04525 5.06082 5.35290 5.41112 5.42008 5.48083 5.66739 5.85775 6.10765 6.20332 6.25117 6.46073 6.62195 6.76022 6.85429 7.20671 7.22306 7.47344 8.82570 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025758 B = 0.001606 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.791135 B =17434.463334 C =18020.257396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.601 5.601 4 C 0.226 3.774 5 C -0.536 4.536 6 H 0.029 0.971 7 C 0.011 3.989 8 N -0.945 5.945 9 Si 0.947 3.053 10 H -0.278 1.278 11 H -0.274 1.274 12 H -0.239 1.239 13 C 0.494 3.506 14 O -0.585 6.585 15 C 0.059 3.941 16 N -0.689 5.689 17 C 0.062 3.938 18 C 0.126 3.874 19 N -0.704 5.704 20 C 0.597 3.403 21 O -0.586 6.586 22 C -0.100 4.100 23 C 0.037 3.963 24 N -0.454 5.454 25 C 0.062 3.938 26 C 0.196 3.804 27 N -0.497 5.497 28 H 0.044 0.956 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.015 0.985 35 H 0.268 0.732 36 H 0.080 0.920 37 H 0.129 0.871 38 H 0.345 0.655 39 H 0.055 0.945 40 H 0.099 0.901 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.417 0.583 44 H 0.197 0.803 45 H 0.095 0.905 46 H 0.118 0.882 47 H 0.098 0.902 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.601 -10.513 35.048 39.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.333 5.333 4 C 0.104 3.896 5 C -0.574 4.574 6 H 0.048 0.952 7 C -0.187 4.187 8 N -0.585 5.585 9 Si 0.770 3.230 10 H -0.204 1.204 11 H -0.199 1.199 12 H -0.162 1.162 13 C 0.283 3.717 14 O -0.465 6.465 15 C -0.072 4.072 16 N -0.322 5.322 17 C -0.067 4.067 18 C 0.002 3.998 19 N -0.355 5.355 20 C 0.384 3.616 21 O -0.467 6.467 22 C -0.228 4.228 23 C -0.105 4.105 24 N -0.134 5.134 25 C -0.078 4.078 26 C -0.089 4.089 27 N -0.216 5.216 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.116 0.884 33 H 0.065 0.935 34 H 0.033 0.967 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.147 0.853 38 H 0.163 0.837 39 H 0.074 0.926 40 H 0.117 0.883 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.254 0.746 44 H 0.214 0.786 45 H 0.113 0.887 46 H 0.136 0.864 47 H 0.117 0.883 48 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -13.815 -9.347 34.345 38.181 hybrid contribution 1.226 0.377 -0.382 1.339 sum -12.588 -8.970 33.963 37.315 Atomic orbital electron populations 1.22164 0.93975 1.03644 1.02096 1.21790 0.95623 0.81015 1.04014 1.48056 1.64355 1.15228 1.05682 1.19254 0.94695 0.92940 0.82729 1.21588 0.97144 1.32037 1.06677 0.95239 1.25838 0.96697 0.97157 0.98968 1.70053 1.17396 1.46595 1.24499 0.85728 0.80508 0.78956 0.77836 1.20406 1.19864 1.16163 1.21287 0.77148 0.86694 0.86603 1.90650 1.47399 1.20536 1.87893 1.21827 1.04783 0.93895 0.86723 1.59977 1.32665 1.38501 1.01034 1.22028 1.03280 0.94853 0.86526 1.21117 1.01001 0.96132 0.81579 1.45542 1.67142 1.18218 1.04645 1.17289 0.76325 0.84565 0.83373 1.90785 1.48888 1.19006 1.88000 1.20400 1.15000 0.94246 0.93191 1.22814 1.02452 0.96900 0.88293 1.45635 1.46980 1.11202 1.09619 1.22544 1.05427 1.06812 0.73066 1.26032 1.02072 0.94214 0.86550 1.70515 1.18819 1.14043 1.18197 0.93711 0.88669 0.91871 0.91053 0.88389 0.93460 0.96702 0.92299 0.90195 0.85332 0.83654 0.92640 0.88310 0.91910 0.92592 0.74585 0.78611 0.88694 0.86367 0.88324 0.73090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 10.24 71.98 0.74 -2.72 16 2 C 0.10 2.78 5.93 86.38 0.51 3.29 16 3 N -0.60 -24.39 2.46 -826.17 -2.03 -26.42 16 4 C 0.23 11.27 4.23 85.63 0.36 11.63 16 5 C -0.54 -32.13 9.94 25.60 0.25 -31.87 16 6 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 7 C 0.01 0.68 5.47 84.65 0.46 1.15 16 8 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 9 Si 0.95 45.58 27.47 68.60 1.88 47.47 16 10 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 12 H -0.24 -10.33 6.54 99.48 0.65 -9.68 16 13 C 0.49 20.15 7.71 87.66 0.68 20.82 16 14 O -0.58 -30.27 15.78 -3.04 -0.05 -30.32 16 15 C 0.06 1.60 4.72 85.55 0.40 2.01 16 16 N -0.69 -19.15 6.13 -517.91 -3.17 -22.32 16 17 C 0.06 1.22 5.80 86.30 0.50 1.72 16 18 C 0.13 2.98 5.93 86.38 0.51 3.49 16 19 N -0.70 -15.55 5.55 -466.49 -2.59 -18.14 16 20 C 0.60 15.82 7.81 86.63 0.68 16.49 16 21 O -0.59 -19.63 16.88 -4.10 -0.07 -19.70 16 22 C -0.10 -2.12 6.98 40.50 0.28 -1.84 16 23 C 0.04 0.56 11.26 83.72 0.94 1.50 16 24 N -0.45 -3.50 3.13 -551.85 -1.73 -5.22 16 25 C 0.06 -0.14 11.15 127.77 1.42 1.28 16 26 C 0.20 1.79 12.55 180.10 2.26 4.05 16 27 N -0.50 -8.78 11.01 -188.81 -2.08 -10.85 16 28 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 1.24 7.22 -2.38 -0.02 1.23 16 31 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 32 H 0.10 2.16 6.44 -2.39 -0.02 2.14 16 33 H 0.05 2.17 7.13 -2.38 -0.02 2.15 16 34 H 0.01 0.81 6.85 -2.39 -0.02 0.79 16 35 H 0.27 16.01 8.31 -92.70 -0.77 15.23 16 36 H 0.08 1.82 7.40 -2.39 -0.02 1.80 16 37 H 0.13 2.66 7.19 -2.39 -0.02 2.65 16 38 H 0.34 10.85 8.43 -89.70 -0.76 10.09 16 39 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.42 7.46 8.19 -92.71 -0.76 6.71 16 44 H 0.20 2.44 8.06 -2.91 -0.02 2.41 16 45 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 46 H 0.12 -0.82 8.14 -2.39 -0.02 -0.84 16 47 H 0.10 -0.34 8.14 -2.39 -0.02 -0.36 16 48 H 0.25 -0.17 8.06 -2.91 -0.02 -0.19 16 Total: -1.00 -93.52 405.51 -0.11 -93.62 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -0.59 Total: 21.30 kcal Atomic # 6 Polarization: 21.00 SS G_CDS: 10.01 Total: 31.01 kcal Atomic # 7 Polarization: -132.08 SS G_CDS: -11.30 Total: -143.38 kcal Atomic # 8 Polarization: -49.90 SS G_CDS: -0.12 Total: -50.02 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.88 Total: 47.47 kcal Total: -93.52 -0.11 -93.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125676673.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.744 kcal (2) G-P(sol) polarization free energy of solvation -93.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds