Wall clock time and date at job start Tue Mar 31 2020 20:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.47064 * 2 1 4 4 C 1.46506 * 119.99527 * 269.99721 * 3 2 1 5 5 C 1.50695 * 109.47203 * 270.00254 * 4 3 2 6 6 H 1.07997 * 120.00495 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00120 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00298 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99788 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47381 * 89.99865 * 9 7 5 11 11 H 1.48498 * 109.47403 * 209.99961 * 9 7 5 12 12 H 1.48496 * 109.47103 * 329.99998 * 9 7 5 13 13 C 1.34768 * 120.00255 * 90.00380 * 3 2 1 14 14 O 1.21279 * 120.00165 * 180.02562 * 13 3 2 15 15 C 1.50703 * 120.00088 * 359.97438 * 13 3 2 16 16 N 1.46893 * 109.47299 * 180.02562 * 15 13 3 17 17 C 1.46903 * 111.00119 * 180.02562 * 16 15 13 18 18 C 1.53001 * 109.46930 * 179.97438 * 17 16 15 19 19 N 1.46500 * 109.46812 * 180.02562 * 18 17 16 20 20 C 1.34775 * 119.99994 * 180.02562 * 19 18 17 21 21 O 1.21570 * 119.99983 * 359.97438 * 20 19 18 22 22 C 1.47709 * 119.99866 * 179.97438 * 20 19 18 23 23 N 1.31807 * 126.52140 * 359.95506 * 22 20 19 24 24 N 1.28468 * 110.07644 * 180.02562 * 23 22 20 25 25 H 0.97002 * 124.88523 * 180.02562 * 24 23 22 26 26 C 1.35037 * 110.22780 * 359.74710 * 24 23 22 27 27 C 1.35359 * 107.23000 * 0.40722 * 26 24 23 28 28 C 1.50703 * 127.24918 * 179.88118 * 27 26 24 29 29 H 1.09008 * 109.47060 * 59.99842 * 1 2 3 30 30 H 1.08996 * 109.47481 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46977 * 300.00460 * 1 2 3 32 32 H 1.08997 * 109.47161 * 240.00381 * 2 1 3 33 33 H 1.08995 * 109.47051 * 119.99783 * 2 1 3 34 34 H 1.09000 * 109.47489 * 30.00279 * 4 3 2 35 35 H 1.08999 * 109.46563 * 150.00193 * 4 3 2 36 36 H 0.97004 * 119.99885 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.46525 * 60.00206 * 15 13 3 38 38 H 1.08998 * 109.47283 * 300.00952 * 15 13 3 39 39 H 1.00901 * 111.00042 * 303.96027 * 16 15 13 40 40 H 1.08997 * 109.46748 * 60.00029 * 17 16 15 41 41 H 1.08999 * 109.47024 * 300.00264 * 17 16 15 42 42 H 1.08997 * 109.47340 * 60.00442 * 18 17 16 43 43 H 1.08999 * 109.47523 * 300.00008 * 18 17 16 44 44 H 0.97005 * 120.00273 * 359.97438 * 19 18 17 45 45 H 1.08005 * 126.38500 * 180.30237 * 26 24 23 46 46 H 1.09002 * 109.47152 * 269.67947 * 28 27 26 47 47 H 1.09001 * 109.46980 * 149.68047 * 28 27 26 48 48 H 1.09004 * 109.47113 * 29.68028 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8349 -1.7039 6 1 4.3426 1.2302 -1.0963 7 6 4.1494 2.3903 -2.8776 8 7 5.3916 2.1840 -3.2570 9 14 3.0135 3.4369 -3.9282 10 1 3.1173 4.8568 -3.5061 11 1 3.4064 3.3147 -5.3550 12 1 1.6137 2.9712 -3.7587 13 6 2.2430 2.0166 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9914 1.3064 2.4723 16 7 2.3092 2.2065 3.5887 17 6 2.0759 1.5463 4.8801 18 6 2.4178 2.5126 6.0160 19 7 2.1857 1.8540 7.3039 20 6 2.4204 2.5186 8.4527 21 8 2.8251 3.6644 8.4202 22 6 2.1858 1.8546 9.7511 23 7 1.7504 0.6243 9.9357 24 7 1.6610 0.3720 11.1922 25 1 1.3631 -0.4707 11.5690 26 6 2.0472 1.4467 11.9128 27 6 2.3854 2.4186 11.0335 28 6 2.8772 3.8069 11.3529 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6877 -2.0285 35 1 2.0956 3.1410 -1.1385 36 1 5.7178 2.5751 -4.0826 37 1 2.6214 0.4187 2.5301 38 1 0.9434 1.0125 2.5299 39 1 3.2575 2.5447 3.5219 40 1 2.7070 0.6608 4.9546 41 1 1.0286 1.2534 4.9545 42 1 1.7870 3.3984 5.9417 43 1 3.4651 2.8051 5.9415 44 1 1.8624 0.9398 7.3298 45 1 2.0786 1.5181 12.9901 46 1 2.0271 4.4848 11.4297 47 1 3.5433 4.1477 10.5602 48 1 3.4170 3.7922 12.2998 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001126852258.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:53 Heat of formation + Delta-G solvation = 7.950946 kcal Electronic energy + Delta-G solvation = -27956.921701 eV Core-core repulsion = 23855.794019 eV Total energy + Delta-G solvation = -4101.127683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.09725 -39.61960 -39.20268 -36.57374 -35.35460 -34.40601 -33.41423 -32.70098 -31.85518 -30.38797 -29.64773 -27.89157 -27.44241 -25.65877 -24.03133 -22.97371 -22.27710 -21.88790 -21.03288 -20.33284 -18.67822 -18.41071 -17.39125 -16.91464 -16.47653 -16.42221 -16.25966 -16.07750 -15.48787 -15.10867 -14.55681 -14.37557 -14.03467 -13.92276 -13.59132 -13.50449 -13.47036 -13.28214 -13.21065 -13.14460 -12.48600 -12.46422 -12.31677 -12.17311 -11.84820 -11.65613 -11.56577 -11.33884 -11.25995 -10.95185 -10.71779 -10.47965 -10.30839 -10.13740 -9.88530 -9.52811 -9.34217 -9.20432 -9.02567 -8.57242 -8.42909 -7.70028 -6.07354 -4.05981 1.18587 1.67625 2.37440 2.84521 3.13239 3.31083 3.36993 3.37076 3.39483 3.70090 4.04169 4.33048 4.40815 4.41994 4.65844 4.81161 4.88680 4.94872 5.03978 5.11097 5.21318 5.26615 5.27114 5.40898 5.46679 5.48961 5.57414 5.59386 5.72679 5.74164 5.78174 5.81615 5.96495 6.10769 6.14834 6.17968 6.39588 6.49281 6.66529 6.84310 6.99921 7.15040 7.32045 7.37900 7.44820 7.63198 7.96628 8.27930 8.48537 8.94344 9.02174 9.53255 11.05991 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023036 B = 0.001691 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.215390 B =16551.529190 C =17252.685435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.217 3.783 5 C -0.528 4.528 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.506 3.494 14 O -0.526 6.526 15 C 0.044 3.956 16 N -0.669 5.669 17 C 0.050 3.950 18 C 0.120 3.880 19 N -0.717 5.717 20 C 0.603 3.397 21 O -0.525 6.525 22 C -0.013 4.013 23 N -0.259 5.259 24 N -0.381 5.381 25 H 0.447 0.553 26 C -0.021 4.021 27 C -0.144 4.144 28 C -0.082 4.082 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.029 0.971 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.056 0.944 38 H 0.096 0.904 39 H 0.356 0.644 40 H 0.036 0.964 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.405 0.595 45 H 0.185 0.815 46 H 0.069 0.931 47 H 0.084 0.916 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.981 -8.472 30.310 33.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.097 3.903 5 C -0.567 4.567 6 H 0.091 0.909 7 C -0.131 4.131 8 N -0.536 5.536 9 Si 0.704 3.296 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.292 3.708 14 O -0.402 6.402 15 C -0.088 4.088 16 N -0.303 5.303 17 C -0.080 4.080 18 C -0.004 4.004 19 N -0.369 5.369 20 C 0.387 3.613 21 O -0.398 6.398 22 C -0.174 4.174 23 N -0.096 5.096 24 N -0.095 5.095 25 H 0.292 0.708 26 C -0.165 4.165 27 C -0.154 4.154 28 C -0.139 4.139 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.114 0.886 39 H 0.176 0.824 40 H 0.054 0.946 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.240 0.760 45 H 0.202 0.798 46 H 0.087 0.913 47 H 0.102 0.898 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.260 -7.559 29.471 32.442 hybrid contribution 0.162 -0.609 0.075 0.635 sum -11.098 -8.168 29.546 32.602 Atomic orbital electron populations 1.22241 0.96764 1.01518 1.02331 1.21436 0.93409 0.83927 1.03016 1.47928 1.64453 1.13336 1.06985 1.19633 0.97212 0.93447 0.80055 1.21329 0.95382 1.32867 1.07118 0.90853 1.24861 0.95008 0.95804 0.97379 1.69897 1.15127 1.45018 1.23598 0.86840 0.81440 0.81669 0.79680 1.19869 1.21119 1.19084 1.20169 0.78691 0.87075 0.84855 1.90686 1.44841 1.17747 1.86891 1.21876 1.02468 0.94325 0.90179 1.59983 1.33217 1.37480 0.99625 1.22068 1.01774 0.95139 0.88989 1.21309 1.02468 0.96217 0.80384 1.45729 1.67864 1.17848 1.05442 1.16815 0.77614 0.85154 0.81689 1.90809 1.45599 1.16742 1.86696 1.21888 1.08487 0.91862 0.95143 1.73501 1.18797 1.17449 0.99843 1.43212 1.48315 1.14637 1.03332 0.70821 1.22733 1.06319 0.88104 0.99345 1.20442 1.05838 0.98520 0.90618 1.20210 1.01352 0.90203 1.02180 0.92179 0.92036 0.92918 0.89739 0.91570 0.95304 0.94552 0.92583 0.92574 0.88580 0.82384 0.94554 0.90298 0.89866 0.90943 0.75986 0.79794 0.91277 0.89752 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 10.24 37.16 0.38 -1.70 16 2 C 0.11 1.60 5.93 -4.04 -0.02 1.58 16 3 N -0.59 -12.02 2.46 -175.06 -0.43 -12.45 16 4 C 0.22 5.32 4.23 -5.19 -0.02 5.29 16 5 C -0.53 -15.21 9.94 -34.44 -0.34 -15.55 16 6 H 0.07 2.31 8.06 -52.49 -0.42 1.88 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.81 13.96 55.43 0.77 -27.03 16 9 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 10 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 13 C 0.51 10.18 7.71 -10.99 -0.08 10.09 16 14 O -0.53 -12.99 15.78 5.56 0.09 -12.90 16 15 C 0.04 0.62 4.72 -4.98 -0.02 0.60 16 16 N -0.67 -9.20 6.13 -115.06 -0.70 -9.90 16 17 C 0.05 0.50 5.80 -3.82 -0.02 0.48 16 18 C 0.12 1.28 5.93 -4.04 -0.02 1.26 16 19 N -0.72 -7.08 5.55 -61.29 -0.34 -7.42 16 20 C 0.60 7.22 7.82 -12.39 -0.10 7.13 16 21 O -0.52 -7.79 15.12 5.30 0.08 -7.71 16 22 C -0.01 -0.13 7.13 -82.76 -0.59 -0.72 16 23 N -0.26 -2.16 11.92 33.42 0.40 -1.77 16 24 N -0.38 -1.90 6.83 30.47 0.21 -1.69 16 25 H 0.45 0.46 8.96 -190.44 -1.71 -1.24 16 26 C -0.02 -0.11 11.97 -17.17 -0.21 -0.31 16 27 C -0.14 -1.23 6.25 -104.40 -0.65 -1.88 16 28 C -0.08 -0.64 9.93 36.01 0.36 -0.28 16 29 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.61 7.22 -51.93 -0.37 0.24 16 32 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 33 H 0.07 0.82 6.44 -51.93 -0.33 0.49 16 34 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 35 H 0.04 0.96 6.85 -51.93 -0.36 0.61 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.06 0.71 7.40 -51.93 -0.38 0.32 16 38 H 0.10 1.15 7.18 -51.93 -0.37 0.78 16 39 H 0.36 5.28 8.43 -39.29 -0.33 4.95 16 40 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.41 3.21 8.20 -40.82 -0.33 2.88 16 45 H 0.18 0.23 8.06 -52.48 -0.42 -0.19 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.08 0.84 6.72 -51.93 -0.35 0.49 16 48 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 401.20 15.07 6.05 6.05 Total: -1.00 -38.37 401.20 -8.73 -47.09 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -8.73 Total: 2.64 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -1.45 Total: 7.98 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: -0.10 Total: -60.26 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: 0.17 Total: -20.61 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -38.37 -8.73 -47.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126852258.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.043 kcal (2) G-P(sol) polarization free energy of solvation -38.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds