Wall clock time and date at job start Tue Mar 31 2020 20:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.47064 * 2 1 4 4 C 1.46506 * 119.99527 * 269.99721 * 3 2 1 5 5 C 1.50695 * 109.47203 * 270.00254 * 4 3 2 6 6 H 1.07997 * 120.00495 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00120 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00298 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99788 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47381 * 89.99865 * 9 7 5 11 11 H 1.48498 * 109.47403 * 209.99961 * 9 7 5 12 12 H 1.48496 * 109.47103 * 329.99998 * 9 7 5 13 13 C 1.34768 * 120.00255 * 90.00380 * 3 2 1 14 14 O 1.21279 * 120.00165 * 180.02562 * 13 3 2 15 15 C 1.50703 * 120.00088 * 359.97438 * 13 3 2 16 16 N 1.46893 * 109.47299 * 180.02562 * 15 13 3 17 17 C 1.46903 * 111.00119 * 180.02562 * 16 15 13 18 18 C 1.53001 * 109.46930 * 179.97438 * 17 16 15 19 19 N 1.46500 * 109.46812 * 180.02562 * 18 17 16 20 20 C 1.34775 * 119.99994 * 180.02562 * 19 18 17 21 21 O 1.21570 * 119.99983 * 359.97438 * 20 19 18 22 22 C 1.47709 * 119.99866 * 179.97438 * 20 19 18 23 23 N 1.31807 * 126.52140 * 359.95506 * 22 20 19 24 24 N 1.28468 * 110.07644 * 180.02562 * 23 22 20 25 25 H 0.97002 * 124.88523 * 180.02562 * 24 23 22 26 26 C 1.35037 * 110.22780 * 359.74710 * 24 23 22 27 27 C 1.35359 * 107.23000 * 0.40722 * 26 24 23 28 28 C 1.50703 * 127.24918 * 179.88118 * 27 26 24 29 29 H 1.09008 * 109.47060 * 59.99842 * 1 2 3 30 30 H 1.08996 * 109.47481 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46977 * 300.00460 * 1 2 3 32 32 H 1.08997 * 109.47161 * 240.00381 * 2 1 3 33 33 H 1.08995 * 109.47051 * 119.99783 * 2 1 3 34 34 H 1.09000 * 109.47489 * 30.00279 * 4 3 2 35 35 H 1.08999 * 109.46563 * 150.00193 * 4 3 2 36 36 H 0.97004 * 119.99885 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.46525 * 60.00206 * 15 13 3 38 38 H 1.08998 * 109.47283 * 300.00952 * 15 13 3 39 39 H 1.00901 * 111.00042 * 303.96027 * 16 15 13 40 40 H 1.08997 * 109.46748 * 60.00029 * 17 16 15 41 41 H 1.08999 * 109.47024 * 300.00264 * 17 16 15 42 42 H 1.08997 * 109.47340 * 60.00442 * 18 17 16 43 43 H 1.08999 * 109.47523 * 300.00008 * 18 17 16 44 44 H 0.97005 * 120.00273 * 359.97438 * 19 18 17 45 45 H 1.08005 * 126.38500 * 180.30237 * 26 24 23 46 46 H 1.09002 * 109.47152 * 269.67947 * 28 27 26 47 47 H 1.09001 * 109.46980 * 149.68047 * 28 27 26 48 48 H 1.09004 * 109.47113 * 29.68028 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8349 -1.7039 6 1 4.3426 1.2302 -1.0963 7 6 4.1494 2.3903 -2.8776 8 7 5.3916 2.1840 -3.2570 9 14 3.0135 3.4369 -3.9282 10 1 3.1173 4.8568 -3.5061 11 1 3.4064 3.3147 -5.3550 12 1 1.6137 2.9712 -3.7587 13 6 2.2430 2.0166 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9914 1.3064 2.4723 16 7 2.3092 2.2065 3.5887 17 6 2.0759 1.5463 4.8801 18 6 2.4178 2.5126 6.0160 19 7 2.1857 1.8540 7.3039 20 6 2.4204 2.5186 8.4527 21 8 2.8251 3.6644 8.4202 22 6 2.1858 1.8546 9.7511 23 7 1.7504 0.6243 9.9357 24 7 1.6610 0.3720 11.1922 25 1 1.3631 -0.4707 11.5690 26 6 2.0472 1.4467 11.9128 27 6 2.3854 2.4186 11.0335 28 6 2.8772 3.8069 11.3529 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6877 -2.0285 35 1 2.0956 3.1410 -1.1385 36 1 5.7178 2.5751 -4.0826 37 1 2.6214 0.4187 2.5301 38 1 0.9434 1.0125 2.5299 39 1 3.2575 2.5447 3.5219 40 1 2.7070 0.6608 4.9546 41 1 1.0286 1.2534 4.9545 42 1 1.7870 3.3984 5.9417 43 1 3.4651 2.8051 5.9415 44 1 1.8624 0.9398 7.3298 45 1 2.0786 1.5181 12.9901 46 1 2.0271 4.4848 11.4297 47 1 3.5433 4.1477 10.5602 48 1 3.4170 3.7922 12.2998 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001126852258.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:52 Heat of formation + Delta-G solvation = -24.417983 kcal Electronic energy + Delta-G solvation = -27958.325324 eV Core-core repulsion = 23855.794019 eV Total energy + Delta-G solvation = -4102.531305 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.63087 -40.80032 -40.45388 -37.62874 -36.89026 -35.43464 -34.81222 -33.98703 -32.51143 -31.90185 -30.70520 -29.44464 -28.04446 -26.89703 -24.94418 -24.34645 -23.59838 -23.06298 -21.60021 -21.10857 -19.92851 -19.13161 -19.09425 -18.24636 -17.78697 -17.48295 -17.23248 -16.89985 -16.83542 -16.33749 -16.02495 -15.35199 -15.21862 -14.99590 -14.81857 -14.65441 -14.46920 -14.32005 -14.17027 -14.00175 -13.78688 -13.69962 -13.50111 -13.31301 -13.14276 -13.05253 -12.66610 -12.53317 -12.45918 -12.33538 -12.03053 -11.86995 -11.86751 -11.73891 -11.21385 -10.83343 -10.62920 -10.50956 -10.13263 -9.78726 -9.47020 -9.37760 -8.34359 -6.38902 0.49369 1.17550 1.31813 1.36528 1.44368 1.80839 1.84173 2.15284 2.30584 2.31504 2.36825 3.00190 3.26695 3.45555 3.69711 3.82647 3.96133 4.08387 4.12791 4.19123 4.34598 4.38985 4.45628 4.49794 4.51941 4.57883 4.67038 4.81393 4.86430 4.89832 4.90990 4.94116 5.02883 5.03877 5.04129 5.19358 5.29789 5.41634 5.47908 5.54059 5.66408 5.85657 6.13828 6.20208 6.24931 6.43127 6.62231 6.75976 6.87273 7.13458 7.22250 7.47276 8.82428 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023036 B = 0.001691 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.215390 B =16551.529190 C =17252.685435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.602 5.602 4 C 0.226 3.774 5 C -0.535 4.535 6 H 0.030 0.970 7 C 0.010 3.990 8 N -0.945 5.945 9 Si 0.947 3.053 10 H -0.278 1.278 11 H -0.274 1.274 12 H -0.239 1.239 13 C 0.494 3.506 14 O -0.585 6.585 15 C 0.060 3.940 16 N -0.689 5.689 17 C 0.061 3.939 18 C 0.126 3.874 19 N -0.704 5.704 20 C 0.596 3.404 21 O -0.566 6.566 22 C -0.045 4.045 23 N -0.267 5.267 24 N -0.362 5.362 25 H 0.466 0.534 26 C 0.008 3.992 27 C -0.178 4.178 28 C -0.077 4.077 29 H 0.043 0.957 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.047 0.953 35 H 0.015 0.985 36 H 0.268 0.732 37 H 0.081 0.919 38 H 0.129 0.871 39 H 0.345 0.655 40 H 0.056 0.944 41 H 0.100 0.900 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.417 0.583 45 H 0.230 0.770 46 H 0.066 0.934 47 H 0.052 0.948 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.808 -10.872 32.428 36.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.333 5.333 4 C 0.103 3.897 5 C -0.573 4.573 6 H 0.048 0.952 7 C -0.188 4.188 8 N -0.585 5.585 9 Si 0.770 3.230 10 H -0.204 1.204 11 H -0.199 1.199 12 H -0.162 1.162 13 C 0.282 3.718 14 O -0.465 6.465 15 C -0.072 4.072 16 N -0.322 5.322 17 C -0.068 4.068 18 C 0.002 3.998 19 N -0.356 5.356 20 C 0.382 3.618 21 O -0.443 6.443 22 C -0.204 4.204 23 N -0.106 5.106 24 N -0.079 5.079 25 H 0.315 0.685 26 C -0.137 4.137 27 C -0.189 4.189 28 C -0.135 4.135 29 H 0.063 0.937 30 H 0.113 0.887 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.065 0.935 35 H 0.033 0.967 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.147 0.853 39 H 0.164 0.836 40 H 0.075 0.925 41 H 0.118 0.882 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.254 0.746 45 H 0.246 0.754 46 H 0.084 0.916 47 H 0.071 0.929 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.146 -10.074 31.607 36.063 hybrid contribution 1.102 0.032 -0.448 1.190 sum -13.044 -10.042 31.159 35.240 Atomic orbital electron populations 1.22164 0.93986 1.03630 1.02102 1.21788 0.95610 0.81015 1.04013 1.48059 1.64353 1.15231 1.05692 1.19258 0.94711 0.92948 0.82743 1.21574 0.97114 1.31983 1.06651 0.95210 1.25844 0.96707 0.97204 0.99010 1.70046 1.17341 1.46591 1.24515 0.85729 0.80509 0.78971 0.77828 1.20411 1.19912 1.16172 1.21304 0.77155 0.86701 0.86624 1.90651 1.47401 1.20543 1.87893 1.21823 1.04788 0.93889 0.86696 1.59979 1.32664 1.38519 1.01049 1.22042 1.03351 0.94876 0.86514 1.21142 1.01200 0.96173 0.81333 1.45594 1.67200 1.18159 1.04675 1.17218 0.76927 0.84853 0.82817 1.90779 1.47572 1.18549 1.87401 1.21738 1.10796 0.93019 0.94826 1.73423 1.19031 1.16566 1.01540 1.43367 1.46565 1.15480 1.02452 0.68517 1.23292 1.03200 0.86458 1.00784 1.20719 1.07695 0.99618 0.90831 1.20135 1.00881 0.90210 1.02288 0.93740 0.88685 0.91841 0.91093 0.88350 0.93480 0.96701 0.92307 0.90178 0.85309 0.83640 0.92546 0.88221 0.91717 0.92418 0.74606 0.75368 0.91552 0.92867 0.89272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 10.24 71.98 0.74 -2.62 16 2 C 0.10 2.72 5.93 86.38 0.51 3.24 16 3 N -0.60 -24.04 2.46 -826.16 -2.03 -26.07 16 4 C 0.23 11.15 4.23 85.63 0.36 11.51 16 5 C -0.53 -31.80 9.94 25.60 0.25 -31.55 16 6 H 0.03 1.97 8.06 -2.91 -0.02 1.94 16 7 C 0.01 0.62 5.47 84.66 0.46 1.08 16 8 N -0.94 -60.39 13.96 21.45 0.30 -60.09 16 9 Si 0.95 45.35 27.47 68.60 1.88 47.23 16 10 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.24 -10.27 6.54 99.48 0.65 -9.62 16 13 C 0.49 19.77 7.71 87.66 0.68 20.45 16 14 O -0.59 -29.90 15.78 -3.03 -0.05 -29.95 16 15 C 0.06 1.55 4.72 85.56 0.40 1.96 16 16 N -0.69 -18.33 6.13 -517.94 -3.17 -21.50 16 17 C 0.06 1.10 5.80 86.30 0.50 1.60 16 18 C 0.13 2.73 5.93 86.38 0.51 3.24 16 19 N -0.70 -13.85 5.55 -466.11 -2.59 -16.44 16 20 C 0.60 14.84 7.82 86.75 0.68 15.52 16 21 O -0.57 -18.10 15.12 -3.94 -0.06 -18.16 16 22 C -0.04 -0.90 7.13 42.46 0.30 -0.59 16 23 N -0.27 -4.00 11.92 -48.17 -0.57 -4.57 16 24 N -0.36 -2.50 6.83 -57.51 -0.39 -2.90 16 25 H 0.47 -0.75 8.96 -219.99 -1.97 -2.72 16 26 C 0.01 0.05 11.97 83.53 1.00 1.05 16 27 C -0.18 -2.86 6.25 -19.72 -0.12 -2.98 16 28 C -0.08 -1.21 9.93 71.24 0.71 -0.50 16 29 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 1.21 7.22 -2.38 -0.02 1.19 16 32 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 33 H 0.10 2.09 6.44 -2.39 -0.02 2.08 16 34 H 0.05 2.14 7.13 -2.39 -0.02 2.13 16 35 H 0.01 0.80 6.85 -2.39 -0.02 0.78 16 36 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 37 H 0.08 1.74 7.40 -2.39 -0.02 1.72 16 38 H 0.13 2.53 7.18 -2.39 -0.02 2.52 16 39 H 0.35 10.47 8.43 -89.69 -0.76 9.71 16 40 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.42 6.09 8.20 -92.70 -0.76 5.33 16 45 H 0.23 -0.60 8.06 -2.91 -0.02 -0.63 16 46 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.05 1.16 6.72 -2.39 -0.02 1.14 16 48 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 Total: -1.00 -91.10 401.20 -2.23 -93.32 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -2.53 Total: 17.72 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: 6.99 Total: 21.40 kcal Atomic # 7 Polarization: -123.11 SS G_CDS: -8.46 Total: -131.57 kcal Atomic # 8 Polarization: -48.00 SS G_CDS: -0.11 Total: -48.11 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.23 kcal Total: -91.10 -2.23 -93.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126852258.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.904 kcal (2) G-P(sol) polarization free energy of solvation -91.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds