Wall clock time and date at job start Tue Mar 31 2020 20:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42899 * 109.47218 * 2 1 4 4 C 1.42902 * 114.00255 * 180.02562 * 3 2 1 5 5 C 1.50692 * 109.47335 * 180.02562 * 4 3 2 6 6 O 1.21285 * 120.00203 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99987 * 179.97438 * 5 4 3 8 8 C 1.46503 * 119.99924 * 179.97438 * 7 5 4 9 9 H 1.09001 * 107.85129 * 321.54225 * 8 7 5 10 10 C 1.50988 * 107.98417 * 78.12461 * 8 7 5 11 11 C 1.53670 * 110.91256 * 194.33312 * 10 8 7 12 12 C 1.51891 * 106.90254 * 280.88908 * 11 10 8 13 13 N 1.29895 * 127.80444 * 245.30146 * 12 11 10 14 14 N 1.29034 * 109.22072 * 179.62791 * 13 12 11 15 15 C 1.30980 * 109.70874 * 0.06579 * 14 13 12 16 16 C 1.50697 * 126.61135 * 180.02562 * 15 14 13 17 17 N 1.46494 * 109.47481 * 270.00286 * 16 15 14 18 18 C 1.36939 * 120.00357 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99511 * 0.02562 * 18 17 16 20 20 C 1.38806 * 120.00218 * 179.97438 * 18 17 16 21 21 N 1.31619 * 119.99714 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00279 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47139 * 89.99383 * 22 20 18 24 24 H 1.48496 * 109.47505 * 209.99775 * 22 20 18 25 25 H 1.48499 * 109.47082 * 330.00095 * 22 20 18 26 26 N 1.34596 * 124.57302 * 65.08525 * 12 11 10 27 27 C 1.47495 * 125.03114 * 0.52169 * 26 12 11 28 28 C 1.50859 * 108.03011 * 205.00232 * 8 7 5 29 29 H 1.09007 * 109.47307 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47561 * 299.99980 * 1 2 3 31 31 H 1.09002 * 109.47546 * 59.99983 * 1 2 3 32 32 H 1.09003 * 109.47561 * 240.00020 * 2 1 3 33 33 H 1.09006 * 109.47092 * 120.00205 * 2 1 3 34 34 H 1.09005 * 109.47106 * 59.99464 * 4 3 2 35 35 H 1.09005 * 109.47032 * 300.00500 * 4 3 2 36 36 H 0.96997 * 120.00041 * 0.02562 * 7 5 4 37 37 H 1.08997 * 109.22557 * 73.94870 * 10 8 7 38 38 H 1.09008 * 109.14428 * 314.65825 * 10 8 7 39 39 H 1.08999 * 109.97144 * 161.54046 * 11 10 8 40 40 H 1.09002 * 110.04096 * 40.27175 * 11 10 8 41 41 H 1.09002 * 109.47179 * 30.00696 * 16 15 14 42 42 H 1.09005 * 109.46980 * 150.00067 * 16 15 14 43 43 H 0.97001 * 119.99839 * 359.97438 * 17 16 15 44 44 H 0.97005 * 120.00015 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.93096 * 174.64498 * 27 26 12 46 46 H 1.08995 * 109.93327 * 53.43218 * 27 26 12 47 47 H 1.09002 * 109.14754 * 45.14203 * 28 8 7 48 48 H 1.08996 * 109.14904 * 285.93245 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8194 2.9161 0.0001 6 8 2.9610 3.7729 0.0005 7 7 5.1209 3.2662 0.0002 8 6 5.4987 4.6817 0.0003 9 1 4.7999 5.2141 -0.6450 10 6 5.3332 5.2083 1.4057 11 6 5.3636 6.7446 1.4230 12 6 6.8223 7.1584 1.3335 13 7 7.5311 7.7763 2.2297 14 7 8.7302 7.9420 1.7829 15 6 8.8273 7.4340 0.5795 16 6 10.0560 7.4179 -0.2929 17 7 10.0847 8.6278 -1.1183 18 6 11.1152 8.8334 -1.9963 19 1 11.9066 8.1033 -2.0806 20 6 11.1422 9.9796 -2.7788 21 7 12.1330 10.1773 -3.6224 22 14 9.7731 11.2421 -2.6337 23 1 10.1299 12.2421 -1.5954 24 1 9.5907 11.9269 -3.9386 25 1 8.5102 10.5609 -2.2513 26 7 7.6173 6.9299 0.2717 27 6 7.1974 6.2549 -0.9707 28 6 6.8752 4.7977 -0.6058 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8332 0.9766 -0.8908 35 1 3.8340 0.9764 0.8892 36 1 5.8075 2.5810 -0.0005 37 1 6.1417 4.8270 2.0294 38 1 4.3795 4.8645 1.8063 39 1 4.9279 7.1152 2.3508 40 1 4.8119 7.1387 0.5695 41 1 10.9466 7.3849 0.3346 42 1 10.0327 6.5390 -0.9371 43 1 9.3734 9.2830 -1.0434 44 1 12.1520 10.9785 -4.1690 45 1 8.0057 6.2850 -1.7013 46 1 6.3103 6.7413 -1.3762 47 1 6.9222 4.1849 -1.5061 48 1 7.6130 4.4371 0.1109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127924646.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:38 Heat of formation + Delta-G solvation = 14.179586 kcal Electronic energy + Delta-G solvation = -29219.675151 eV Core-core repulsion = 25118.817562 eV Total energy + Delta-G solvation = -4100.857588 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.15456 -40.50228 -38.50205 -37.38706 -35.41012 -34.71738 -33.59215 -32.13987 -31.65431 -31.37657 -29.79041 -28.29030 -26.51873 -25.66739 -24.37000 -23.30486 -22.50950 -21.48511 -21.15111 -20.72123 -20.09299 -18.03720 -17.66960 -17.52591 -17.07586 -16.94629 -16.35512 -15.84655 -15.38956 -15.08800 -14.91521 -14.59309 -14.57406 -14.40845 -13.83118 -13.47659 -13.38015 -13.21394 -13.08469 -12.92241 -12.84962 -12.67438 -12.46390 -12.12517 -11.94818 -11.89020 -11.77284 -11.64007 -11.42380 -11.23017 -11.05711 -10.93978 -10.28862 -10.26420 -10.24511 -10.07803 -9.99142 -9.70331 -9.59300 -9.04937 -8.84148 -7.40605 -5.87316 -3.25722 1.99023 2.17056 2.25808 2.56512 3.08122 3.31823 3.37720 3.41688 3.42257 3.99242 4.19758 4.23166 4.33391 4.43733 4.49273 4.51177 4.51899 4.62940 4.67562 4.71204 4.73573 4.82113 4.82913 4.97723 5.01600 5.16210 5.18866 5.23011 5.32284 5.40536 5.44164 5.48651 5.56315 5.64073 5.65367 5.67137 5.79061 5.95723 6.05116 6.17633 6.39589 6.45232 6.49767 6.99300 7.01195 7.76470 7.82980 8.30040 8.98718 9.05635 9.78502 9.96299 11.29992 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019808 B = 0.002199 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.228860 B =12730.118813 C =13264.564941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.365 6.365 4 C 0.044 3.956 5 C 0.514 3.486 6 O -0.513 6.513 7 N -0.730 5.730 8 C 0.147 3.853 9 H 0.086 0.914 10 C -0.126 4.126 11 C -0.024 4.024 12 C 0.161 3.839 13 N -0.295 5.295 14 N -0.292 5.292 15 C 0.186 3.814 16 C 0.242 3.758 17 N -0.748 5.748 18 C -0.251 4.251 19 H 0.095 0.905 20 C 0.013 3.987 21 N -0.927 5.927 22 Si 0.884 3.116 23 H -0.281 1.281 24 H -0.289 1.289 25 H -0.281 1.281 26 N -0.464 5.464 27 C 0.108 3.892 28 C -0.143 4.143 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.401 0.599 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.045 0.955 43 H 0.364 0.636 44 H 0.262 0.738 45 H 0.119 0.881 46 H 0.098 0.902 47 H 0.098 0.902 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.288 -24.384 6.220 32.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.283 6.283 4 C -0.036 4.036 5 C 0.299 3.701 6 O -0.387 6.387 7 N -0.384 5.384 8 C 0.043 3.957 9 H 0.104 0.896 10 C -0.166 4.166 11 C -0.064 4.064 12 C -0.107 4.107 13 N -0.135 5.135 14 N -0.132 5.132 15 C -0.082 4.082 16 C 0.113 3.887 17 N -0.395 5.395 18 C -0.381 4.381 19 H 0.113 0.887 20 C -0.184 4.184 21 N -0.574 5.574 22 Si 0.714 3.286 23 H -0.207 1.207 24 H -0.215 1.215 25 H -0.208 1.208 26 N -0.155 5.155 27 C -0.015 4.015 28 C -0.181 4.181 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.235 0.765 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.123 0.877 40 H 0.106 0.894 41 H 0.083 0.917 42 H 0.063 0.937 43 H 0.197 0.803 44 H 0.072 0.928 45 H 0.137 0.863 46 H 0.116 0.884 47 H 0.116 0.884 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.448 -22.946 7.361 31.604 hybrid contribution -0.657 -0.231 -1.192 1.381 sum -21.104 -23.177 6.169 31.947 Atomic orbital electron populations 1.21737 0.93247 1.02366 1.03565 1.22566 0.96125 0.83139 1.00250 1.88032 1.18250 1.26584 1.95438 1.22181 0.84308 0.94427 1.02680 1.20268 0.82631 0.90695 0.76540 1.90760 1.49224 1.51634 1.47096 1.46127 1.07058 1.08584 1.76595 1.20395 0.96390 0.81451 0.97482 0.89559 1.21707 1.03776 0.94644 0.96426 1.20374 0.86090 0.94866 1.05059 1.24682 0.97023 1.02673 0.86338 1.74214 0.98743 1.16027 1.24544 1.74595 1.11385 1.19392 1.07817 1.25306 0.88823 0.98419 0.95646 1.19017 0.88294 0.91491 0.89926 1.42643 1.28476 1.21294 1.47111 1.18969 1.00752 1.05398 1.12953 0.88731 1.24621 0.97602 0.97770 0.98359 1.69690 1.31869 1.28369 1.27489 0.86577 0.82268 0.82529 0.77225 1.20723 1.21526 1.20760 1.46087 1.09989 1.44133 1.15259 1.22344 1.03437 0.91046 0.84712 1.21925 0.96543 0.96804 1.02840 0.90866 0.91621 0.91623 0.93101 0.93113 0.90185 0.90212 0.76489 0.91091 0.89590 0.87686 0.89355 0.91670 0.93709 0.80305 0.92829 0.86271 0.88382 0.88400 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.28 37.15 0.38 -0.39 16 2 C 0.06 0.30 6.66 37.15 0.25 0.55 16 3 O -0.36 -3.24 9.88 -55.14 -0.54 -3.78 16 4 C 0.04 0.26 6.42 36.00 0.23 0.49 16 5 C 0.51 4.40 7.51 -10.99 -0.08 4.31 16 6 O -0.51 -6.82 15.62 -14.36 -0.22 -7.05 16 7 N -0.73 -4.39 4.99 -55.85 -0.28 -4.67 16 8 C 0.15 1.11 1.90 -70.01 -0.13 0.98 16 9 H 0.09 0.77 7.13 -51.93 -0.37 0.40 16 10 C -0.13 -1.12 5.10 -27.39 -0.14 -1.26 16 11 C -0.02 -0.25 6.02 -26.95 -0.16 -0.41 16 12 C 0.16 2.35 7.03 -155.74 -1.09 1.26 16 13 N -0.30 -5.49 12.23 32.85 0.40 -5.08 16 14 N -0.29 -5.92 12.25 32.71 0.40 -5.52 16 15 C 0.19 3.33 7.45 -155.38 -1.16 2.17 16 16 C 0.24 4.57 6.48 -5.20 -0.03 4.53 16 17 N -0.75 -17.47 5.40 -61.09 -0.33 -17.80 16 18 C -0.25 -6.85 10.47 -15.06 -0.16 -7.01 16 19 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 20 C 0.01 0.38 5.50 -17.43 -0.10 0.28 16 21 N -0.93 -28.37 13.97 55.49 0.78 -27.59 16 22 Si 0.88 22.22 27.74 -169.99 -4.71 17.51 16 23 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.28 -6.75 6.52 56.52 0.37 -6.38 16 26 N -0.46 -6.61 2.72 -109.59 -0.30 -6.91 16 27 C 0.11 1.09 6.46 -3.17 -0.02 1.07 16 28 C -0.14 -1.00 5.05 -27.47 -0.14 -1.14 16 29 H 0.07 0.22 8.14 -51.92 -0.42 -0.20 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.40 1.22 8.54 -40.82 -0.35 0.87 16 37 H 0.07 0.67 7.91 -51.93 -0.41 0.26 16 38 H 0.09 0.81 7.23 -51.92 -0.38 0.44 16 39 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.09 0.83 7.89 -51.93 -0.41 0.42 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.05 0.75 7.46 -51.93 -0.39 0.36 16 43 H 0.36 8.76 5.52 -40.82 -0.23 8.53 16 44 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 45 H 0.12 1.26 7.16 -51.93 -0.37 0.89 16 46 H 0.10 0.89 7.87 -51.93 -0.41 0.48 16 47 H 0.10 0.49 8.12 -51.93 -0.42 0.06 16 48 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16 LS Contribution 390.40 15.07 5.88 5.88 Total: -1.00 -37.82 390.40 -8.83 -46.65 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.54 Total: 2.90 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -2.36 Total: 5.45 kcal Atomic # 7 Polarization: -68.24 SS G_CDS: 0.67 Total: -67.57 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.77 Total: -10.82 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.82 -8.83 -46.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127924646.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.831 kcal (2) G-P(sol) polarization free energy of solvation -37.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds