Wall clock time and date at job start Tue Mar 31 2020 20:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42899 * 109.47218 * 2 1 4 4 C 1.42902 * 114.00255 * 180.02562 * 3 2 1 5 5 C 1.50692 * 109.47335 * 180.02562 * 4 3 2 6 6 O 1.21285 * 120.00203 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99987 * 179.97438 * 5 4 3 8 8 C 1.46503 * 119.99924 * 179.97438 * 7 5 4 9 9 H 1.09001 * 107.85129 * 321.54225 * 8 7 5 10 10 C 1.50988 * 107.98417 * 78.12461 * 8 7 5 11 11 C 1.53670 * 110.91256 * 194.33312 * 10 8 7 12 12 C 1.51891 * 106.90254 * 280.88908 * 11 10 8 13 13 N 1.29895 * 127.80444 * 245.30146 * 12 11 10 14 14 N 1.29034 * 109.22072 * 179.62791 * 13 12 11 15 15 C 1.30980 * 109.70874 * 0.06579 * 14 13 12 16 16 C 1.50697 * 126.61135 * 180.02562 * 15 14 13 17 17 N 1.46494 * 109.47481 * 270.00286 * 16 15 14 18 18 C 1.36939 * 120.00357 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99511 * 0.02562 * 18 17 16 20 20 C 1.38806 * 120.00218 * 179.97438 * 18 17 16 21 21 N 1.31619 * 119.99714 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00279 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47139 * 89.99383 * 22 20 18 24 24 H 1.48496 * 109.47505 * 209.99775 * 22 20 18 25 25 H 1.48499 * 109.47082 * 330.00095 * 22 20 18 26 26 N 1.34596 * 124.57302 * 65.08525 * 12 11 10 27 27 C 1.47495 * 125.03114 * 0.52169 * 26 12 11 28 28 C 1.50859 * 108.03011 * 205.00232 * 8 7 5 29 29 H 1.09007 * 109.47307 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47561 * 299.99980 * 1 2 3 31 31 H 1.09002 * 109.47546 * 59.99983 * 1 2 3 32 32 H 1.09003 * 109.47561 * 240.00020 * 2 1 3 33 33 H 1.09006 * 109.47092 * 120.00205 * 2 1 3 34 34 H 1.09005 * 109.47106 * 59.99464 * 4 3 2 35 35 H 1.09005 * 109.47032 * 300.00500 * 4 3 2 36 36 H 0.96997 * 120.00041 * 0.02562 * 7 5 4 37 37 H 1.08997 * 109.22557 * 73.94870 * 10 8 7 38 38 H 1.09008 * 109.14428 * 314.65825 * 10 8 7 39 39 H 1.08999 * 109.97144 * 161.54046 * 11 10 8 40 40 H 1.09002 * 110.04096 * 40.27175 * 11 10 8 41 41 H 1.09002 * 109.47179 * 30.00696 * 16 15 14 42 42 H 1.09005 * 109.46980 * 150.00067 * 16 15 14 43 43 H 0.97001 * 119.99839 * 359.97438 * 17 16 15 44 44 H 0.97005 * 120.00015 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.93096 * 174.64498 * 27 26 12 46 46 H 1.08995 * 109.93327 * 53.43218 * 27 26 12 47 47 H 1.09002 * 109.14754 * 45.14203 * 28 8 7 48 48 H 1.08996 * 109.14904 * 285.93245 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8194 2.9161 0.0001 6 8 2.9610 3.7729 0.0005 7 7 5.1209 3.2662 0.0002 8 6 5.4987 4.6817 0.0003 9 1 4.7999 5.2141 -0.6450 10 6 5.3332 5.2083 1.4057 11 6 5.3636 6.7446 1.4230 12 6 6.8223 7.1584 1.3335 13 7 7.5311 7.7763 2.2297 14 7 8.7302 7.9420 1.7829 15 6 8.8273 7.4340 0.5795 16 6 10.0560 7.4179 -0.2929 17 7 10.0847 8.6278 -1.1183 18 6 11.1152 8.8334 -1.9963 19 1 11.9066 8.1033 -2.0806 20 6 11.1422 9.9796 -2.7788 21 7 12.1330 10.1773 -3.6224 22 14 9.7731 11.2421 -2.6337 23 1 10.1299 12.2421 -1.5954 24 1 9.5907 11.9269 -3.9386 25 1 8.5102 10.5609 -2.2513 26 7 7.6173 6.9299 0.2717 27 6 7.1974 6.2549 -0.9707 28 6 6.8752 4.7977 -0.6058 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8332 0.9766 -0.8908 35 1 3.8340 0.9764 0.8892 36 1 5.8075 2.5810 -0.0005 37 1 6.1417 4.8270 2.0294 38 1 4.3795 4.8645 1.8063 39 1 4.9279 7.1152 2.3508 40 1 4.8119 7.1387 0.5695 41 1 10.9466 7.3849 0.3346 42 1 10.0327 6.5390 -0.9371 43 1 9.3734 9.2830 -1.0434 44 1 12.1520 10.9785 -4.1690 45 1 8.0057 6.2850 -1.7013 46 1 6.3103 6.7413 -1.3762 47 1 6.9222 4.1849 -1.5061 48 1 7.6130 4.4371 0.1109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127924646.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:36 Heat of formation + Delta-G solvation = -12.874262 kcal Electronic energy + Delta-G solvation = -29220.848293 eV Core-core repulsion = 25118.817562 eV Total energy + Delta-G solvation = -4102.030731 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.39565 -41.14265 -39.06311 -38.11587 -37.11063 -35.74436 -34.66622 -33.54318 -32.66639 -32.07493 -31.18307 -28.93570 -28.00978 -26.49402 -25.37884 -24.37970 -23.67521 -22.47156 -21.91200 -21.69024 -21.14097 -19.93103 -18.40191 -18.14373 -17.97108 -17.40733 -17.24501 -16.83680 -16.48820 -16.21107 -16.02907 -15.95648 -15.54792 -15.22062 -14.99214 -14.59402 -14.42767 -14.18492 -14.00117 -13.92866 -13.84744 -13.66745 -13.31417 -13.20677 -13.05250 -12.95009 -12.68735 -12.55778 -12.31317 -12.21380 -12.17976 -12.16048 -11.90188 -11.86198 -11.40165 -11.23499 -11.08772 -10.81332 -10.65321 -10.25910 -10.12764 -9.42624 -8.06831 -5.42255 0.75829 1.31494 1.37845 1.41158 1.47162 1.57060 1.72613 1.78103 2.42543 2.98806 3.10661 3.25456 3.30165 3.43541 3.59455 3.69125 3.70688 3.78479 3.91378 4.00144 4.16704 4.17742 4.19508 4.27431 4.28714 4.33927 4.36809 4.46515 4.51748 4.55692 4.63994 4.81637 4.83594 4.86548 4.97536 4.99470 5.02997 5.03526 5.07218 5.15486 5.27347 5.38040 5.69306 5.87543 6.11264 6.15378 6.54012 6.97454 7.22299 7.67929 7.70364 7.89006 9.13418 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019808 B = 0.002199 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.228860 B =12730.118813 C =13264.564941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.051 3.949 3 O -0.404 6.404 4 C 0.043 3.957 5 C 0.510 3.490 6 O -0.568 6.568 7 N -0.712 5.712 8 C 0.149 3.851 9 H 0.078 0.922 10 C -0.116 4.116 11 C -0.022 4.022 12 C 0.180 3.820 13 N -0.336 5.336 14 N -0.331 5.331 15 C 0.176 3.824 16 C 0.245 3.755 17 N -0.751 5.751 18 C -0.231 4.231 19 H 0.075 0.925 20 C -0.048 4.048 21 N -0.973 5.973 22 Si 0.944 3.056 23 H -0.289 1.289 24 H -0.289 1.289 25 H -0.263 1.263 26 N -0.455 5.455 27 C 0.097 3.903 28 C -0.129 4.129 29 H 0.094 0.906 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.419 0.581 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.103 0.897 41 H 0.058 0.942 42 H 0.076 0.924 43 H 0.362 0.638 44 H 0.260 0.740 45 H 0.118 0.882 46 H 0.112 0.888 47 H 0.128 0.872 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.905 -26.801 6.012 35.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.025 4.025 3 O -0.324 6.324 4 C -0.036 4.036 5 C 0.297 3.703 6 O -0.446 6.446 7 N -0.366 5.366 8 C 0.044 3.956 9 H 0.096 0.904 10 C -0.155 4.155 11 C -0.062 4.062 12 C -0.089 4.089 13 N -0.176 5.176 14 N -0.172 5.172 15 C -0.093 4.093 16 C 0.117 3.883 17 N -0.398 5.398 18 C -0.362 4.362 19 H 0.093 0.907 20 C -0.241 4.241 21 N -0.623 5.623 22 Si 0.772 3.228 23 H -0.216 1.216 24 H -0.215 1.215 25 H -0.188 1.188 26 N -0.145 5.145 27 C -0.025 4.025 28 C -0.167 4.167 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.256 0.744 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.194 0.806 44 H 0.069 0.931 45 H 0.137 0.863 46 H 0.130 0.870 47 H 0.146 0.854 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.062 -25.443 7.171 34.431 hybrid contribution -0.172 0.392 -1.068 1.150 sum -22.234 -25.051 6.103 34.046 Atomic orbital electron populations 1.21787 0.93632 1.03371 1.02347 1.22743 0.95960 0.82065 1.01738 1.87984 1.19983 1.28599 1.95795 1.22358 0.83353 0.92617 1.05280 1.20848 0.82588 0.91558 0.75286 1.90738 1.50780 1.53248 1.49826 1.45933 1.06952 1.08416 1.75341 1.20269 0.96580 0.82297 0.96408 0.90397 1.21597 1.03353 0.93264 0.97308 1.20593 0.83466 0.96107 1.06041 1.25322 0.98035 1.00178 0.85349 1.74131 0.98784 1.18339 1.26325 1.74489 1.12731 1.20708 1.09260 1.24899 0.89717 0.99484 0.95199 1.19040 0.88816 0.90595 0.89834 1.42626 1.27322 1.22792 1.47030 1.18977 1.00587 1.04275 1.12312 0.90695 1.25279 0.99930 0.99996 0.98865 1.69829 1.34101 1.29182 1.29155 0.85597 0.80445 0.80008 0.76706 1.21584 1.21539 1.18789 1.46268 1.08633 1.43325 1.16277 1.22750 1.03931 0.92729 0.83067 1.21840 0.95791 0.94980 1.04103 0.88755 0.92837 0.92829 0.91507 0.91569 0.87307 0.87522 0.74357 0.91467 0.89978 0.87213 0.87860 0.92382 0.90638 0.80606 0.93133 0.86338 0.86957 0.85394 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.28 71.98 0.74 -0.66 16 2 C 0.05 0.44 6.66 71.98 0.48 0.92 16 3 O -0.40 -6.53 9.88 -129.94 -1.28 -7.81 16 4 C 0.04 0.38 6.42 71.23 0.46 0.84 16 5 C 0.51 7.59 7.51 87.65 0.66 8.25 16 6 O -0.57 -14.57 15.62 15.99 0.25 -14.32 16 7 N -0.71 -6.27 4.99 -449.00 -2.24 -8.51 16 8 C 0.15 1.83 1.90 43.64 0.08 1.91 16 9 H 0.08 1.18 7.13 -2.39 -0.02 1.16 16 10 C -0.12 -1.80 5.10 30.16 0.15 -1.65 16 11 C -0.02 -0.42 6.02 30.45 0.18 -0.23 16 12 C 0.18 5.00 7.03 138.83 0.98 5.98 16 13 N -0.34 -12.34 12.23 -50.00 -0.61 -12.95 16 14 N -0.33 -13.37 12.25 -50.43 -0.62 -13.99 16 15 C 0.18 6.11 7.45 138.12 1.03 7.14 16 16 C 0.24 8.95 6.48 85.63 0.56 9.51 16 17 N -0.75 -34.26 5.40 -347.19 -1.87 -36.14 16 18 C -0.23 -12.54 10.47 84.03 0.88 -11.66 16 19 H 0.08 4.31 8.06 -2.91 -0.02 4.29 16 20 C -0.05 -2.75 5.50 84.86 0.47 -2.28 16 21 N -0.97 -60.31 13.97 21.65 0.30 -60.01 16 22 Si 0.94 45.81 27.74 68.60 1.90 47.71 16 23 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 24 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 25 H -0.26 -11.77 6.52 99.48 0.65 -11.13 16 26 N -0.45 -12.07 2.72 -500.63 -1.36 -13.43 16 27 C 0.10 1.66 6.46 86.40 0.56 2.22 16 28 C -0.13 -1.34 5.05 30.11 0.15 -1.18 16 29 H 0.09 0.41 8.14 -2.38 -0.02 0.39 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.07 0.35 8.14 -2.38 -0.02 0.33 16 34 H 0.11 0.32 8.14 -2.38 -0.02 0.30 16 35 H 0.11 0.35 8.14 -2.38 -0.02 0.33 16 36 H 0.42 0.81 8.54 -92.71 -0.79 0.02 16 37 H 0.07 1.12 7.91 -2.39 -0.02 1.10 16 38 H 0.08 1.41 7.23 -2.38 -0.02 1.40 16 39 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.10 1.70 7.89 -2.39 -0.02 1.68 16 41 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.08 2.34 7.46 -2.38 -0.02 2.32 16 43 H 0.36 16.84 5.52 -92.71 -0.51 16.33 16 44 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 45 H 0.12 2.13 7.16 -2.39 -0.02 2.11 16 46 H 0.11 1.66 7.87 -2.39 -0.02 1.65 16 47 H 0.13 0.65 8.12 -2.39 -0.02 0.63 16 48 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 Total: -1.00 -84.49 390.40 1.46 -83.03 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -0.37 Total: 17.31 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 7.37 Total: 19.11 kcal Atomic # 7 Polarization: -138.62 SS G_CDS: -6.40 Total: -145.02 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -1.03 Total: -22.13 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.90 Total: 47.71 kcal Total: -84.49 1.46 -83.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127924646.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.156 kcal (2) G-P(sol) polarization free energy of solvation -84.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds