Wall clock time and date at job start Tue Mar 31 2020 20:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47177 * 2 1 4 4 C 1.42896 * 113.99807 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47455 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47687 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.46929 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00501 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99566 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00006 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.63663 * 36.68428 * 10 9 7 12 12 C 1.54320 * 110.72185 * 273.54709 * 10 9 7 13 13 N 1.47019 * 107.27277 * 219.44270 * 12 10 9 14 14 C 1.36938 * 125.64669 * 178.90429 * 13 12 10 15 15 H 1.08000 * 119.99888 * 174.90800 * 14 13 12 16 16 C 1.38808 * 120.00295 * 354.90898 * 14 13 12 17 17 N 1.31612 * 120.00006 * 7.05977 * 16 14 13 18 18 Si 1.86804 * 120.00043 * 187.06641 * 16 14 13 19 19 H 1.48497 * 109.47345 * 94.98173 * 18 16 14 20 20 H 1.48492 * 109.47160 * 214.98338 * 18 16 14 21 21 H 1.48506 * 109.46972 * 334.98328 * 18 16 14 22 22 C 1.47419 * 108.70067 * 358.93965 * 13 12 10 23 23 C 1.54907 * 104.83600 * 24.12890 * 22 13 12 24 24 H 1.09001 * 111.00580 * 204.91990 * 23 22 13 25 25 N 1.46498 * 111.00634 * 81.06302 * 23 22 13 26 26 C 1.35313 * 125.86400 * 332.80917 * 25 23 22 27 27 C 1.35356 * 106.17452 * 180.02562 * 26 25 23 28 28 N 1.33769 * 106.49214 * 359.97438 * 27 26 25 29 29 N 1.28636 * 108.89035 * 359.74172 * 28 27 26 30 30 H 1.08997 * 109.46974 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46909 * 299.99537 * 1 2 3 32 32 H 1.09002 * 109.47013 * 59.99706 * 1 2 3 33 33 H 1.09000 * 109.46730 * 239.99720 * 2 1 3 34 34 H 1.09002 * 109.47013 * 120.00294 * 2 1 3 35 35 H 1.08995 * 109.47668 * 300.00343 * 4 3 2 36 36 H 1.09009 * 109.47131 * 60.00209 * 4 3 2 37 37 H 1.09005 * 109.46982 * 300.00774 * 5 4 3 38 38 H 1.09005 * 109.47003 * 59.99562 * 5 4 3 39 39 H 1.08995 * 109.46747 * 300.00171 * 6 5 4 40 40 H 1.08999 * 109.46560 * 60.00021 * 6 5 4 41 41 H 0.96995 * 119.99994 * 0.02562 * 9 7 6 42 42 H 1.09001 * 109.88356 * 338.86465 * 12 10 9 43 43 H 1.09005 * 109.88354 * 100.02083 * 12 10 9 44 44 H 0.97001 * 120.00257 * 180.02562 * 17 16 14 45 45 H 1.09002 * 110.36676 * 142.97336 * 22 13 12 46 46 H 1.09003 * 110.36932 * 265.28861 * 22 13 12 47 47 H 1.08001 * 126.91465 * 0.02562 * 26 25 23 48 48 H 1.07994 * 126.75183 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 -0.0012 6 6 5.3507 3.0591 -0.0024 7 6 5.7392 4.5151 -0.0024 8 8 4.8809 5.3718 -0.0019 9 7 7.0408 4.8652 -0.0039 10 6 7.4186 6.2806 -0.0044 11 1 6.7280 6.8628 0.6057 12 6 7.4715 6.8312 -1.4451 13 7 8.6313 7.7309 -1.5264 14 6 9.0402 8.4069 -2.6449 15 1 9.8581 9.1094 -2.5824 16 6 8.4035 8.1892 -3.8590 17 7 7.3214 7.4417 -3.9098 18 14 9.0824 8.9572 -5.4206 19 1 9.9627 7.9802 -6.1105 20 1 7.9593 9.3308 -6.3173 21 1 9.8652 10.1711 -5.0755 22 6 9.2817 7.7842 -0.2045 23 6 8.8785 6.4593 0.4896 24 1 8.9142 6.5599 1.5744 25 7 9.7247 5.3517 0.0389 26 6 10.3477 5.2667 -1.1592 27 6 11.0147 4.0889 -1.1548 28 7 10.7706 3.5188 0.0305 29 7 10.0078 4.2947 0.7167 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8341 0.9763 0.8891 36 1 3.8333 0.9766 -0.8909 37 1 3.4223 3.4216 -0.8911 38 1 3.4230 3.4221 0.8888 39 1 5.7541 2.5757 0.8873 40 1 5.7527 2.5753 -0.8927 41 1 7.7273 4.1800 -0.0055 42 1 7.5893 6.0097 -2.1518 43 1 6.5577 7.3834 -1.6648 44 1 6.8767 7.2893 -4.7583 45 1 10.3645 7.8397 -0.3164 46 1 8.9142 8.6379 0.3650 47 1 10.3188 5.9927 -1.9584 48 1 11.6246 3.6886 -1.9510 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128736353.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:50 Heat of formation + Delta-G solvation = 45.258600 kcal Electronic energy + Delta-G solvation = -29946.677208 eV Core-core repulsion = 25847.167307 eV Total energy + Delta-G solvation = -4099.509901 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.95844 -39.71230 -38.31687 -37.81246 -34.21653 -33.86694 -33.41462 -31.78103 -31.22542 -30.54971 -29.04003 -27.87993 -26.51800 -24.83755 -23.01425 -22.77512 -22.22756 -21.97232 -20.64935 -20.13181 -19.83475 -17.77987 -17.26693 -16.99694 -16.60906 -16.50450 -15.78770 -15.43984 -15.34849 -14.78186 -14.47235 -14.41624 -14.20397 -13.97232 -13.71313 -13.48992 -12.98772 -12.88601 -12.84365 -12.51245 -12.33448 -11.97609 -11.80865 -11.72052 -11.65825 -11.38257 -11.33521 -11.10676 -11.07720 -10.88615 -10.87865 -10.65343 -10.55679 -10.24271 -10.01525 -9.78148 -9.76838 -9.61210 -8.97176 -8.85105 -8.69236 -7.15937 -5.93990 -3.32645 1.98558 2.62672 2.88929 2.91656 3.19802 3.27823 3.33844 3.36762 3.63907 4.28301 4.50163 4.72633 4.76538 4.77728 4.88173 4.89511 4.95854 5.06190 5.06786 5.12824 5.23381 5.29241 5.31040 5.37308 5.42784 5.44855 5.58464 5.60637 5.64639 5.73307 5.79654 5.82758 5.85482 6.04748 6.06947 6.13600 6.17391 6.24275 6.52423 6.57699 7.03816 7.04636 7.26799 7.33831 7.60932 7.70785 7.95981 8.46176 8.84524 8.93847 9.54036 10.14033 11.15956 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010577 B = 0.003021 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.527202 B = 9267.682574 C =10760.868260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.388 6.388 4 C 0.063 3.937 5 C -0.102 4.102 6 C -0.137 4.137 7 C 0.517 3.483 8 O -0.533 6.533 9 N -0.718 5.718 10 C 0.112 3.888 11 H 0.110 0.890 12 C 0.167 3.833 13 N -0.602 5.602 14 C -0.247 4.247 15 H 0.083 0.917 16 C 0.004 3.996 17 N -0.909 5.909 18 Si 0.913 3.087 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.279 1.279 22 C 0.128 3.872 23 C 0.114 3.886 24 H 0.119 0.881 25 N -0.276 5.276 26 C -0.004 4.004 27 C -0.076 4.076 28 N -0.278 5.278 29 N -0.112 5.112 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.397 0.603 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.256 0.744 45 H 0.060 0.940 46 H 0.054 0.946 47 H 0.204 0.796 48 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.980 -11.421 8.114 14.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.308 6.308 4 C -0.013 4.013 5 C -0.140 4.140 6 C -0.177 4.177 7 C 0.303 3.697 8 O -0.409 6.409 9 N -0.371 5.371 10 C 0.005 3.995 11 H 0.127 0.873 12 C 0.042 3.958 13 N -0.329 5.329 14 C -0.374 4.374 15 H 0.101 0.899 16 C -0.195 4.195 17 N -0.554 5.554 18 Si 0.742 3.258 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.000 4.000 23 C 0.010 3.990 24 H 0.137 0.863 25 N -0.069 5.069 26 C -0.155 4.155 27 C -0.233 4.233 28 N -0.144 5.144 29 N -0.091 5.091 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.233 0.767 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.221 0.779 48 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -4.032 -11.365 9.225 15.183 hybrid contribution 0.977 0.493 -1.970 2.254 sum -3.054 -10.873 7.255 13.423 Atomic orbital electron populations 1.21747 0.93809 1.02102 1.03260 1.22448 0.95612 0.83987 0.99957 1.87902 1.21266 1.26201 1.95411 1.22510 0.81148 0.97587 1.00087 1.21200 0.93272 0.94417 1.05099 1.21521 0.97518 0.94172 1.04515 1.20451 0.82237 0.91196 0.75792 1.90724 1.49195 1.52105 1.48866 1.45888 1.07638 1.07929 1.75610 1.22826 0.92255 0.82702 1.01758 0.87261 1.21654 0.91506 0.94198 0.88475 1.44499 1.29489 1.53726 1.05227 1.18991 1.14738 1.19081 0.84600 0.89903 1.24871 0.97211 0.99493 0.97902 1.69964 1.18696 1.41673 1.25060 0.86107 0.78003 0.78597 0.83067 1.21343 1.21635 1.20481 1.21939 0.98202 0.91187 0.88649 1.23337 0.89551 0.85626 1.00502 0.86310 1.47264 1.32407 1.15692 1.11530 1.24211 0.97735 1.01814 0.91764 1.23544 1.06587 0.94978 0.98166 1.75001 1.11675 1.23321 1.04426 1.78204 1.15965 0.93946 1.20965 0.91216 0.91842 0.91764 0.93464 0.93530 0.93345 0.93251 0.90058 0.90305 0.88893 0.88805 0.76749 0.92282 0.92415 0.93311 0.92231 0.92884 0.77920 0.79869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.78 16 2 C 0.06 0.51 6.66 37.16 0.25 0.75 16 3 O -0.39 -4.72 10.34 -35.23 -0.36 -5.08 16 4 C 0.06 0.67 5.94 37.16 0.22 0.89 16 5 C -0.10 -1.29 4.87 -26.73 -0.13 -1.42 16 6 C -0.14 -1.68 5.70 -27.89 -0.16 -1.84 16 7 C 0.52 8.54 7.83 -10.99 -0.09 8.46 16 8 O -0.53 -10.76 15.71 5.56 0.09 -10.67 16 9 N -0.72 -11.69 5.08 -52.03 -0.26 -11.96 16 10 C 0.11 1.94 3.11 -66.10 -0.21 1.74 16 11 H 0.11 1.91 7.69 -51.93 -0.40 1.51 16 12 C 0.17 3.67 4.76 -3.07 -0.01 3.66 16 13 N -0.60 -12.98 2.23 -170.08 -0.38 -13.36 16 14 C -0.25 -5.98 10.05 -15.06 -0.15 -6.14 16 15 H 0.08 1.94 7.84 -52.49 -0.41 1.53 16 16 C 0.00 0.09 5.48 -17.43 -0.10 0.00 16 17 N -0.91 -24.76 10.36 55.49 0.57 -24.18 16 18 Si 0.91 20.40 29.56 -169.99 -5.02 15.37 16 19 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 C 0.13 2.15 6.21 -2.53 -0.02 2.14 16 23 C 0.11 1.74 4.06 -65.79 -0.27 1.47 16 24 H 0.12 1.52 8.14 -51.93 -0.42 1.09 16 25 N -0.28 -4.44 2.45 -52.68 -0.13 -4.57 16 26 C 0.00 -0.06 10.01 -17.04 -0.17 -0.23 16 27 C -0.08 -1.17 12.05 -17.74 -0.21 -1.39 16 28 N -0.28 -4.70 12.41 30.23 0.38 -4.32 16 29 N -0.11 -1.87 12.21 60.35 0.74 -1.13 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.05 0.48 8.14 -51.92 -0.42 0.05 16 37 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 38 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.40 6.26 6.73 -40.82 -0.27 5.98 16 42 H 0.06 1.47 7.18 -51.93 -0.37 1.09 16 43 H 0.06 1.51 7.61 -51.93 -0.40 1.12 16 44 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 45 H 0.06 0.97 7.86 -51.93 -0.41 0.56 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.20 3.73 6.81 -52.49 -0.36 3.37 16 48 H 0.18 2.27 8.06 -52.49 -0.42 1.84 16 LS Contribution 392.52 15.07 5.92 5.92 Total: -1.00 -30.11 392.52 -6.80 -36.91 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -7.67 Total: 9.76 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -0.66 Total: 7.31 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.91 Total: -59.51 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.28 Total: -15.76 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.11 -6.80 -36.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128736353.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.173 kcal (2) G-P(sol) polarization free energy of solvation -30.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds