Wall clock time and date at job start Tue Mar 31 2020 20:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47177 * 2 1 4 4 C 1.42896 * 113.99807 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47455 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47687 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.46929 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00501 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99566 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00006 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.63663 * 36.68428 * 10 9 7 12 12 C 1.54320 * 110.72185 * 273.54709 * 10 9 7 13 13 N 1.47019 * 107.27277 * 219.44270 * 12 10 9 14 14 C 1.36938 * 125.64669 * 178.90429 * 13 12 10 15 15 H 1.08000 * 119.99888 * 174.90800 * 14 13 12 16 16 C 1.38808 * 120.00295 * 354.90898 * 14 13 12 17 17 N 1.31612 * 120.00006 * 7.05977 * 16 14 13 18 18 Si 1.86804 * 120.00043 * 187.06641 * 16 14 13 19 19 H 1.48497 * 109.47345 * 94.98173 * 18 16 14 20 20 H 1.48492 * 109.47160 * 214.98338 * 18 16 14 21 21 H 1.48506 * 109.46972 * 334.98328 * 18 16 14 22 22 C 1.47419 * 108.70067 * 358.93965 * 13 12 10 23 23 C 1.54907 * 104.83600 * 24.12890 * 22 13 12 24 24 H 1.09001 * 111.00580 * 204.91990 * 23 22 13 25 25 N 1.46498 * 111.00634 * 81.06302 * 23 22 13 26 26 C 1.35313 * 125.86400 * 332.80917 * 25 23 22 27 27 C 1.35356 * 106.17452 * 180.02562 * 26 25 23 28 28 N 1.33769 * 106.49214 * 359.97438 * 27 26 25 29 29 N 1.28636 * 108.89035 * 359.74172 * 28 27 26 30 30 H 1.08997 * 109.46974 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46909 * 299.99537 * 1 2 3 32 32 H 1.09002 * 109.47013 * 59.99706 * 1 2 3 33 33 H 1.09000 * 109.46730 * 239.99720 * 2 1 3 34 34 H 1.09002 * 109.47013 * 120.00294 * 2 1 3 35 35 H 1.08995 * 109.47668 * 300.00343 * 4 3 2 36 36 H 1.09009 * 109.47131 * 60.00209 * 4 3 2 37 37 H 1.09005 * 109.46982 * 300.00774 * 5 4 3 38 38 H 1.09005 * 109.47003 * 59.99562 * 5 4 3 39 39 H 1.08995 * 109.46747 * 300.00171 * 6 5 4 40 40 H 1.08999 * 109.46560 * 60.00021 * 6 5 4 41 41 H 0.96995 * 119.99994 * 0.02562 * 9 7 6 42 42 H 1.09001 * 109.88356 * 338.86465 * 12 10 9 43 43 H 1.09005 * 109.88354 * 100.02083 * 12 10 9 44 44 H 0.97001 * 120.00257 * 180.02562 * 17 16 14 45 45 H 1.09002 * 110.36676 * 142.97336 * 22 13 12 46 46 H 1.09003 * 110.36932 * 265.28861 * 22 13 12 47 47 H 1.08001 * 126.91465 * 0.02562 * 26 25 23 48 48 H 1.07994 * 126.75183 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 -0.0012 6 6 5.3507 3.0591 -0.0024 7 6 5.7392 4.5151 -0.0024 8 8 4.8809 5.3718 -0.0019 9 7 7.0408 4.8652 -0.0039 10 6 7.4186 6.2806 -0.0044 11 1 6.7280 6.8628 0.6057 12 6 7.4715 6.8312 -1.4451 13 7 8.6313 7.7309 -1.5264 14 6 9.0402 8.4069 -2.6449 15 1 9.8581 9.1094 -2.5824 16 6 8.4035 8.1892 -3.8590 17 7 7.3214 7.4417 -3.9098 18 14 9.0824 8.9572 -5.4206 19 1 9.9627 7.9802 -6.1105 20 1 7.9593 9.3308 -6.3173 21 1 9.8652 10.1711 -5.0755 22 6 9.2817 7.7842 -0.2045 23 6 8.8785 6.4593 0.4896 24 1 8.9142 6.5599 1.5744 25 7 9.7247 5.3517 0.0389 26 6 10.3477 5.2667 -1.1592 27 6 11.0147 4.0889 -1.1548 28 7 10.7706 3.5188 0.0305 29 7 10.0078 4.2947 0.7167 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8341 0.9763 0.8891 36 1 3.8333 0.9766 -0.8909 37 1 3.4223 3.4216 -0.8911 38 1 3.4230 3.4221 0.8888 39 1 5.7541 2.5757 0.8873 40 1 5.7527 2.5753 -0.8927 41 1 7.7273 4.1800 -0.0055 42 1 7.5893 6.0097 -2.1518 43 1 6.5577 7.3834 -1.6648 44 1 6.8767 7.2893 -4.7583 45 1 10.3645 7.8397 -0.3164 46 1 8.9142 8.6379 0.3650 47 1 10.3188 5.9927 -1.9584 48 1 11.6246 3.6886 -1.9510 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128736353.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:48 Heat of formation + Delta-G solvation = 25.319182 kcal Electronic energy + Delta-G solvation = -29947.541846 eV Core-core repulsion = 25847.167307 eV Total energy + Delta-G solvation = -4100.374539 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.24984 -41.09108 -39.47243 -38.96767 -35.81041 -34.89074 -34.81305 -33.44447 -31.99712 -31.82710 -30.59296 -29.32210 -27.72708 -26.47562 -24.13397 -23.68014 -23.53003 -23.15348 -22.07132 -21.47999 -21.23978 -19.27389 -18.56991 -18.48102 -17.48690 -17.44901 -17.24512 -16.80545 -16.53036 -16.22778 -15.90044 -15.68021 -15.42096 -15.12184 -15.01323 -14.93106 -14.39221 -14.06918 -13.89580 -13.71266 -13.55852 -13.34296 -13.06192 -12.85739 -12.77950 -12.72510 -12.53556 -12.51806 -12.47012 -12.25507 -12.05423 -11.90380 -11.88553 -11.81817 -11.80567 -11.13366 -10.99899 -10.74114 -10.54371 -10.24882 -10.17402 -9.00391 -7.88059 -5.26336 0.66870 1.33943 1.48839 1.49933 1.56485 1.58259 1.65894 1.99943 2.47030 2.75711 3.15530 3.32878 3.40115 3.53206 3.65768 3.76680 3.92841 3.95035 4.05664 4.17089 4.19136 4.23439 4.32067 4.42392 4.44562 4.45439 4.47784 4.48035 4.51984 4.60958 4.68970 4.80793 4.85327 4.86871 5.00934 5.08767 5.11129 5.21427 5.27843 5.31391 5.41334 5.52668 5.68716 5.74429 6.09026 6.29422 6.36969 7.00600 7.14453 7.55573 7.68604 8.28661 9.20760 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010577 B = 0.003021 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.527202 B = 9267.682574 C =10760.868260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 O -0.419 6.419 4 C 0.066 3.934 5 C -0.097 4.097 6 C -0.126 4.126 7 C 0.510 3.490 8 O -0.576 6.576 9 N -0.712 5.712 10 C 0.121 3.879 11 H 0.110 0.890 12 C 0.188 3.812 13 N -0.615 5.615 14 C -0.237 4.237 15 H 0.094 0.906 16 C -0.055 4.055 17 N -0.945 5.945 18 Si 0.971 3.029 19 H -0.285 1.285 20 H -0.306 1.306 21 H -0.266 1.266 22 C 0.126 3.874 23 C 0.128 3.872 24 H 0.158 0.842 25 N -0.274 5.274 26 C -0.018 4.018 27 C -0.064 4.064 28 N -0.290 5.290 29 N -0.110 5.110 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.127 0.873 40 H 0.109 0.891 41 H 0.403 0.597 42 H 0.024 0.976 43 H 0.003 0.997 44 H 0.244 0.756 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.186 0.814 48 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.155 -12.847 9.734 16.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 O -0.339 6.339 4 C -0.010 4.010 5 C -0.136 4.136 6 C -0.166 4.166 7 C 0.298 3.702 8 O -0.455 6.455 9 N -0.364 5.364 10 C 0.013 3.987 11 H 0.128 0.872 12 C 0.062 3.938 13 N -0.342 5.342 14 C -0.365 4.365 15 H 0.112 0.888 16 C -0.249 4.249 17 N -0.592 5.592 18 Si 0.801 3.199 19 H -0.212 1.212 20 H -0.234 1.234 21 H -0.190 1.190 22 C 0.000 4.000 23 C 0.025 3.975 24 H 0.176 0.824 25 N -0.067 5.067 26 C -0.170 4.170 27 C -0.221 4.221 28 N -0.157 5.157 29 N -0.089 5.089 30 H 0.111 0.889 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.145 0.855 40 H 0.127 0.873 41 H 0.239 0.761 42 H 0.042 0.958 43 H 0.021 0.979 44 H 0.054 0.946 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.203 0.797 48 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -2.152 -12.802 10.885 16.942 hybrid contribution 0.420 0.955 -2.437 2.651 sum -1.732 -11.847 8.449 14.654 Atomic orbital electron populations 1.21785 0.93233 1.03400 1.02485 1.22679 0.96211 0.82732 1.01107 1.87867 1.22034 1.28348 1.95661 1.22496 0.80879 0.95866 1.01734 1.21112 0.93517 0.95949 1.02987 1.21535 0.97209 0.91076 1.06780 1.21296 0.81687 0.92796 0.74392 1.90709 1.50266 1.53790 1.50781 1.45849 1.07896 1.07453 1.75198 1.22524 0.94139 0.83402 0.98646 0.87173 1.21153 0.89451 0.92492 0.90739 1.44627 1.29751 1.53231 1.06625 1.19370 1.13761 1.18100 0.85304 0.88783 1.25582 0.97786 1.00817 1.00720 1.70197 1.20387 1.44067 1.24583 0.85167 0.76808 0.78251 0.79723 1.21176 1.23375 1.19008 1.22149 0.98594 0.92710 0.86521 1.23339 0.87395 0.84497 1.02281 0.82425 1.47301 1.32280 1.15788 1.11345 1.24058 0.98926 1.02245 0.91753 1.23977 1.05775 0.94085 0.98220 1.75012 1.12106 1.23577 1.04967 1.78185 1.15922 0.93883 1.20930 0.88877 0.92403 0.92756 0.92545 0.92029 0.91051 0.92057 0.93044 0.91664 0.85511 0.87257 0.76083 0.95775 0.97916 0.94640 0.90952 0.90637 0.79728 0.77119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 10.28 71.98 0.74 -1.44 16 2 C 0.05 0.80 6.66 71.98 0.48 1.28 16 3 O -0.42 -9.92 10.34 -148.98 -1.54 -11.47 16 4 C 0.07 1.32 5.94 71.98 0.43 1.75 16 5 C -0.10 -2.46 4.87 30.59 0.15 -2.31 16 6 C -0.13 -2.93 5.70 29.85 0.17 -2.75 16 7 C 0.51 16.90 7.83 87.65 0.69 17.59 16 8 O -0.58 -24.21 15.71 -3.02 -0.05 -24.26 16 9 N -0.71 -22.77 5.08 -436.92 -2.22 -24.99 16 10 C 0.12 4.16 3.11 46.18 0.14 4.31 16 11 H 0.11 3.85 7.69 -2.39 -0.02 3.83 16 12 C 0.19 8.57 4.76 86.73 0.41 8.98 16 13 N -0.62 -26.62 2.23 -692.01 -1.55 -28.16 16 14 C -0.24 -11.52 10.05 84.03 0.84 -10.67 16 15 H 0.09 4.29 7.84 -2.91 -0.02 4.26 16 16 C -0.05 -2.87 5.48 84.86 0.46 -2.40 16 17 N -0.94 -54.05 10.36 21.65 0.22 -53.83 16 18 Si 0.97 42.71 29.56 68.60 2.03 44.74 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 20 H -0.31 -14.17 7.11 99.48 0.71 -13.46 16 21 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 22 C 0.13 4.00 6.21 86.86 0.54 4.54 16 23 C 0.13 3.62 4.06 46.38 0.19 3.81 16 24 H 0.16 3.37 8.14 -2.39 -0.02 3.35 16 25 N -0.27 -8.20 2.45 -320.59 -0.79 -8.99 16 26 C -0.02 -0.58 10.01 83.49 0.84 0.26 16 27 C -0.06 -1.83 12.05 83.73 1.01 -0.82 16 28 N -0.29 -9.05 12.41 -58.26 -0.72 -9.77 16 29 N -0.11 -3.38 12.21 37.02 0.45 -2.93 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.05 1.58 8.10 -2.38 -0.02 1.56 16 38 H 0.06 1.80 8.10 -2.38 -0.02 1.78 16 39 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.40 12.05 6.73 -92.71 -0.62 11.43 16 42 H 0.02 1.26 7.18 -2.39 -0.02 1.24 16 43 H 0.00 0.15 7.61 -2.38 -0.02 0.13 16 44 H 0.24 13.98 8.31 -92.71 -0.77 13.21 16 45 H 0.07 2.16 7.86 -2.39 -0.02 2.14 16 46 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.19 6.72 6.81 -2.91 -0.02 6.70 16 48 H 0.21 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -69.14 392.52 3.27 -65.87 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: 0.34 Total: 31.66 kcal Atomic # 6 Polarization: 15.02 SS G_CDS: 7.09 Total: 22.11 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -4.60 Total: -128.66 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -1.59 Total: -35.73 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -69.14 3.27 -65.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128736353.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.191 kcal (2) G-P(sol) polarization free energy of solvation -69.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds