Wall clock time and date at job start Tue Mar 31 2020 21:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99498 * 2 1 4 4 C 1.53002 * 109.46726 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47266 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47266 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47127 * 179.97438 * 6 5 4 8 8 O 1.21278 * 119.99874 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99989 * 180.02562 * 7 6 5 10 10 C 1.47023 * 125.64968 * 0.02562 * 9 7 6 11 11 C 1.54318 * 107.27401 * 178.91014 * 10 9 7 12 12 H 1.09002 * 110.72246 * 96.34428 * 11 10 9 13 13 N 1.46496 * 110.72309 * 219.44799 * 11 10 9 14 14 C 1.36945 * 119.99718 * 271.15655 * 13 11 10 15 15 H 1.07997 * 119.99756 * 359.97438 * 14 13 11 16 16 C 1.38805 * 119.99878 * 179.97438 * 14 13 11 17 17 N 1.31624 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47187 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47141 * 300.00154 * 18 16 14 21 21 H 1.48498 * 109.47018 * 60.00200 * 18 16 14 22 22 C 1.55164 * 103.09977 * 337.89820 * 11 10 9 23 23 H 1.09002 * 111.00119 * 153.48589 * 22 11 10 24 24 N 1.46494 * 111.00259 * 277.33437 * 22 11 10 25 25 C 1.35315 * 125.86455 * 84.72143 * 24 22 11 26 26 C 1.35354 * 106.17651 * 179.90388 * 25 24 22 27 27 N 1.33775 * 106.49342 * 0.34724 * 26 25 24 28 28 N 1.28638 * 108.88386 * 359.77986 * 27 26 25 29 29 C 1.47431 * 125.64879 * 179.97438 * 9 7 6 30 30 H 1.08998 * 109.47693 * 59.99743 * 1 2 3 31 31 H 1.08996 * 109.47122 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47137 * 299.99825 * 1 2 3 33 33 H 1.09001 * 109.47491 * 60.00421 * 3 2 1 34 34 H 1.08999 * 109.47352 * 299.99688 * 3 2 1 35 35 H 1.08998 * 109.47289 * 60.00222 * 4 3 2 36 36 H 1.08998 * 109.47265 * 300.00294 * 4 3 2 37 37 H 1.08998 * 109.47063 * 59.99743 * 5 4 3 38 38 H 1.08999 * 109.46804 * 299.99616 * 5 4 3 39 39 H 1.09001 * 109.46848 * 59.99619 * 6 5 4 40 40 H 1.08998 * 109.47265 * 299.99954 * 6 5 4 41 41 H 1.09000 * 109.88031 * 59.48840 * 10 9 7 42 42 H 1.09000 * 109.87914 * 298.33108 * 10 9 7 43 43 H 0.96996 * 120.00499 * 91.15386 * 13 11 10 44 44 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 45 45 H 1.08005 * 126.91412 * 0.02562 * 25 24 22 46 46 H 1.07996 * 126.75596 * 180.11919 * 26 25 24 47 47 H 1.09002 * 110.36661 * 323.00117 * 29 9 7 48 48 H 1.09001 * 110.36207 * 85.21158 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5825 0.0000 6 6 5.6830 2.4617 -0.0013 7 6 6.2959 3.8384 -0.0013 8 8 5.5830 4.8195 -0.0008 9 7 7.6362 3.9793 -0.0029 10 6 8.6133 2.8807 -0.0052 11 6 10.0187 3.5175 -0.0344 12 1 10.4322 3.5858 0.9719 13 7 10.9141 2.7575 -0.9101 14 6 11.6399 1.7115 -0.4057 15 1 11.5525 1.4472 0.6378 16 6 12.4879 0.9911 -1.2356 17 7 12.5947 1.3136 -2.5072 18 14 13.4785 -0.4352 -0.5473 19 1 14.2995 -1.0354 -1.6294 20 1 14.3683 0.0568 0.5349 21 1 12.5547 -1.4612 -0.0005 22 6 9.7522 4.9313 -0.6154 23 1 10.5089 5.6405 -0.2800 24 7 9.6830 4.8933 -2.0783 25 6 8.5867 4.5933 -2.8125 26 6 8.9662 4.6785 -4.1090 27 7 10.2611 5.0144 -4.1043 28 7 10.6558 5.1340 -2.8858 29 6 8.3655 5.2606 -0.0036 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8567 0.6440 -0.8909 36 1 3.8574 0.6436 0.8891 37 1 3.8364 3.1228 0.8904 38 1 3.8358 3.1239 -0.8896 39 1 6.0038 1.9214 -0.8919 40 1 6.0053 1.9201 0.8880 41 1 8.4697 2.2587 -0.8887 42 1 8.4973 2.2796 0.8966 43 1 10.9928 2.9951 -1.8472 44 1 13.1876 0.8104 -3.0870 45 1 7.6056 4.3391 -2.4393 46 1 8.3467 4.5054 -4.9764 47 1 7.8432 5.9940 -0.6179 48 1 8.4802 5.6323 1.0146 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129703423.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:48 Heat of formation + Delta-G solvation = 38.565993 kcal Electronic energy + Delta-G solvation = -29832.604117 eV Core-core repulsion = 25732.804002 eV Total energy + Delta-G solvation = -4099.800115 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.86296 -40.13846 -38.34723 -37.88115 -34.94803 -34.32301 -33.53799 -31.37287 -30.70478 -30.40490 -29.16961 -27.75085 -26.83877 -24.88826 -23.89861 -23.27998 -22.18796 -21.72357 -21.31046 -20.15389 -19.22586 -17.69355 -17.51549 -17.01123 -16.66880 -16.55104 -15.96408 -15.68123 -15.55137 -14.96349 -14.92138 -14.65807 -14.61102 -13.92994 -13.78513 -13.47710 -13.35665 -12.95871 -12.81145 -12.75980 -12.65815 -12.24102 -11.90247 -11.76285 -11.73521 -11.62770 -11.28433 -11.20508 -11.16529 -11.00282 -10.92481 -10.86922 -10.45502 -10.27811 -9.98540 -9.98014 -9.93165 -9.60304 -9.14801 -8.89640 -8.68781 -7.27905 -5.92540 -3.29365 2.06603 2.56538 2.68162 2.84112 3.09307 3.33618 3.38141 3.40854 3.45352 4.09718 4.41478 4.49729 4.63290 4.65629 4.70400 4.87747 4.91381 4.94651 4.96308 5.05201 5.09938 5.13295 5.20904 5.28867 5.31078 5.40059 5.43598 5.45685 5.48242 5.50304 5.52811 5.61962 5.66399 5.69982 5.85560 5.99115 6.01727 6.08760 6.17925 6.18750 6.34295 6.57291 6.84229 7.02769 7.42926 7.50568 8.07873 8.20063 9.02388 9.32974 9.80580 10.14808 11.26934 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009590 B = 0.003040 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.142282 B = 9209.401455 C =10806.711939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.061 3.939 4 C -0.120 4.120 5 C -0.099 4.099 6 C -0.136 4.136 7 C 0.529 3.471 8 O -0.548 6.548 9 N -0.619 5.619 10 C 0.066 3.934 11 C 0.166 3.834 12 H 0.092 0.908 13 N -0.707 5.707 14 C -0.268 4.268 15 H 0.075 0.925 16 C 0.001 3.999 17 N -0.915 5.915 18 Si 0.911 3.089 19 H -0.289 1.289 20 H -0.283 1.283 21 H -0.284 1.284 22 C 0.112 3.888 23 H 0.133 0.867 24 N -0.269 5.269 25 C -0.046 4.046 26 C -0.058 4.058 27 N -0.271 5.271 28 N -0.064 5.064 29 C 0.104 3.896 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.040 0.960 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.394 0.606 44 H 0.261 0.739 45 H 0.175 0.825 46 H 0.182 0.818 47 H 0.088 0.912 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.432 3.308 6.513 20.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.016 4.016 4 C -0.158 4.158 5 C -0.137 4.137 6 C -0.176 4.176 7 C 0.319 3.681 8 O -0.426 6.426 9 N -0.354 5.354 10 C -0.060 4.060 11 C 0.051 3.949 12 H 0.109 0.891 13 N -0.348 5.348 14 C -0.398 4.398 15 H 0.093 0.907 16 C -0.197 4.197 17 N -0.559 5.559 18 Si 0.741 3.259 19 H -0.215 1.215 20 H -0.210 1.210 21 H -0.210 1.210 22 C 0.007 3.993 23 H 0.151 0.849 24 N -0.062 5.062 25 C -0.197 4.197 26 C -0.215 4.215 27 N -0.137 5.137 28 N -0.044 5.044 29 C -0.020 4.020 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.230 0.770 44 H 0.071 0.929 45 H 0.192 0.808 46 H 0.199 0.801 47 H 0.106 0.894 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.135 3.878 6.436 19.630 hybrid contribution -0.802 -1.045 0.238 1.339 sum -18.936 2.833 6.673 20.277 Atomic orbital electron populations 1.22732 0.81101 1.02714 0.99948 1.87879 1.19665 1.28291 1.95434 1.22560 0.94260 0.84455 1.00293 1.21539 0.92920 0.97610 1.03707 1.21227 0.92865 0.95957 1.03698 1.21632 0.96417 0.94401 1.05106 1.20430 0.80252 0.91825 0.75642 1.90695 1.60187 1.41022 1.50737 1.48672 1.05295 1.08248 1.73151 1.23527 0.89980 0.89866 1.02626 1.21566 0.89758 0.87245 0.96292 0.89084 1.42426 1.47270 1.35641 1.09470 1.19112 1.19273 1.06811 0.94640 0.90747 1.24858 0.99698 0.99585 0.95596 1.69696 1.40400 1.41872 1.03971 0.86244 0.79895 0.82011 0.77785 1.21516 1.20960 1.21015 1.23368 0.98923 1.02834 0.74156 0.84918 1.47154 1.07236 1.43645 1.08178 1.23407 0.95014 1.09128 0.92126 1.23463 0.93848 1.07444 0.96750 1.75107 1.10658 1.16417 1.11511 1.78397 1.13031 1.18409 0.94546 1.22479 0.89823 0.87735 1.01990 0.94083 0.89669 0.94138 0.93270 0.93205 0.90796 0.90918 0.91076 0.90995 0.88480 0.88594 0.90371 0.90971 0.76952 0.92944 0.80758 0.80067 0.89412 0.88606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.96 10.70 -35.23 -0.38 -4.34 16 3 C 0.06 0.52 5.94 37.16 0.22 0.74 16 4 C -0.12 -1.03 5.58 -26.73 -0.15 -1.18 16 5 C -0.10 -0.91 4.50 -26.73 -0.12 -1.03 16 6 C -0.14 -1.34 4.89 -27.88 -0.14 -1.48 16 7 C 0.53 6.65 7.62 -10.99 -0.08 6.57 16 8 O -0.55 -8.38 16.24 5.56 0.09 -8.29 16 9 N -0.62 -7.65 2.18 -170.40 -0.37 -8.02 16 10 C 0.07 0.93 5.87 -3.07 -0.02 0.91 16 11 C 0.17 2.73 3.46 -66.10 -0.23 2.50 16 12 H 0.09 1.39 8.11 -51.93 -0.42 0.97 16 13 N -0.71 -16.18 5.12 -51.65 -0.26 -16.44 16 14 C -0.27 -6.84 9.97 -15.06 -0.15 -6.99 16 15 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 16 C 0.00 0.03 5.50 -17.43 -0.10 -0.06 16 17 N -0.91 -27.10 13.06 55.49 0.72 -26.38 16 18 Si 0.91 21.32 29.55 -169.99 -5.02 16.30 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 C 0.11 1.59 4.07 -65.68 -0.27 1.33 16 23 H 0.13 1.71 8.14 -51.93 -0.42 1.29 16 24 N -0.27 -4.61 2.44 -52.58 -0.13 -4.74 16 25 C -0.05 -0.73 10.02 -17.04 -0.17 -0.90 16 26 C -0.06 -0.98 12.05 -17.73 -0.21 -1.19 16 27 N -0.27 -5.58 12.41 30.24 0.38 -5.20 16 28 N -0.06 -1.33 12.23 60.35 0.74 -0.59 16 29 C 0.10 1.21 5.88 -2.42 -0.01 1.20 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 38 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.08 1.27 8.03 -51.93 -0.42 0.85 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.39 10.07 5.94 -40.82 -0.24 9.83 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.18 2.44 6.80 -52.48 -0.36 2.08 16 46 H 0.18 2.37 8.06 -52.49 -0.42 1.95 16 47 H 0.09 1.07 7.76 -51.93 -0.40 0.67 16 48 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 396.38 15.07 5.97 5.97 Total: -1.00 -33.72 396.38 -6.30 -40.03 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -7.72 Total: 9.97 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -0.32 Total: 1.74 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: 1.07 Total: -61.38 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.29 Total: -12.63 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.72 -6.30 -40.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129703423.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.594 kcal (2) G-P(sol) polarization free energy of solvation -33.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds