Wall clock time and date at job start Tue Mar 31 2020 21:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99498 * 2 1 4 4 C 1.53002 * 109.46726 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47266 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47266 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47127 * 179.97438 * 6 5 4 8 8 O 1.21278 * 119.99874 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99989 * 180.02562 * 7 6 5 10 10 C 1.47023 * 125.64968 * 0.02562 * 9 7 6 11 11 C 1.54318 * 107.27401 * 178.91014 * 10 9 7 12 12 H 1.09002 * 110.72246 * 96.34428 * 11 10 9 13 13 N 1.46496 * 110.72309 * 219.44799 * 11 10 9 14 14 C 1.36945 * 119.99718 * 271.15655 * 13 11 10 15 15 H 1.07997 * 119.99756 * 359.97438 * 14 13 11 16 16 C 1.38805 * 119.99878 * 179.97438 * 14 13 11 17 17 N 1.31624 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47187 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47141 * 300.00154 * 18 16 14 21 21 H 1.48498 * 109.47018 * 60.00200 * 18 16 14 22 22 C 1.55164 * 103.09977 * 337.89820 * 11 10 9 23 23 H 1.09002 * 111.00119 * 153.48589 * 22 11 10 24 24 N 1.46494 * 111.00259 * 277.33437 * 22 11 10 25 25 C 1.35315 * 125.86455 * 84.72143 * 24 22 11 26 26 C 1.35354 * 106.17651 * 179.90388 * 25 24 22 27 27 N 1.33775 * 106.49342 * 0.34724 * 26 25 24 28 28 N 1.28638 * 108.88386 * 359.77986 * 27 26 25 29 29 C 1.47431 * 125.64879 * 179.97438 * 9 7 6 30 30 H 1.08998 * 109.47693 * 59.99743 * 1 2 3 31 31 H 1.08996 * 109.47122 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47137 * 299.99825 * 1 2 3 33 33 H 1.09001 * 109.47491 * 60.00421 * 3 2 1 34 34 H 1.08999 * 109.47352 * 299.99688 * 3 2 1 35 35 H 1.08998 * 109.47289 * 60.00222 * 4 3 2 36 36 H 1.08998 * 109.47265 * 300.00294 * 4 3 2 37 37 H 1.08998 * 109.47063 * 59.99743 * 5 4 3 38 38 H 1.08999 * 109.46804 * 299.99616 * 5 4 3 39 39 H 1.09001 * 109.46848 * 59.99619 * 6 5 4 40 40 H 1.08998 * 109.47265 * 299.99954 * 6 5 4 41 41 H 1.09000 * 109.88031 * 59.48840 * 10 9 7 42 42 H 1.09000 * 109.87914 * 298.33108 * 10 9 7 43 43 H 0.96996 * 120.00499 * 91.15386 * 13 11 10 44 44 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 45 45 H 1.08005 * 126.91412 * 0.02562 * 25 24 22 46 46 H 1.07996 * 126.75596 * 180.11919 * 26 25 24 47 47 H 1.09002 * 110.36661 * 323.00117 * 29 9 7 48 48 H 1.09001 * 110.36207 * 85.21158 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5825 0.0000 6 6 5.6830 2.4617 -0.0013 7 6 6.2959 3.8384 -0.0013 8 8 5.5830 4.8195 -0.0008 9 7 7.6362 3.9793 -0.0029 10 6 8.6133 2.8807 -0.0052 11 6 10.0187 3.5175 -0.0344 12 1 10.4322 3.5858 0.9719 13 7 10.9141 2.7575 -0.9101 14 6 11.6399 1.7115 -0.4057 15 1 11.5525 1.4472 0.6378 16 6 12.4879 0.9911 -1.2356 17 7 12.5947 1.3136 -2.5072 18 14 13.4785 -0.4352 -0.5473 19 1 14.2995 -1.0354 -1.6294 20 1 14.3683 0.0568 0.5349 21 1 12.5547 -1.4612 -0.0005 22 6 9.7522 4.9313 -0.6154 23 1 10.5089 5.6405 -0.2800 24 7 9.6830 4.8933 -2.0783 25 6 8.5867 4.5933 -2.8125 26 6 8.9662 4.6785 -4.1090 27 7 10.2611 5.0144 -4.1043 28 7 10.6558 5.1340 -2.8858 29 6 8.3655 5.2606 -0.0036 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8567 0.6440 -0.8909 36 1 3.8574 0.6436 0.8891 37 1 3.8364 3.1228 0.8904 38 1 3.8358 3.1239 -0.8896 39 1 6.0038 1.9214 -0.8919 40 1 6.0053 1.9201 0.8880 41 1 8.4697 2.2587 -0.8887 42 1 8.4973 2.2796 0.8966 43 1 10.9928 2.9951 -1.8472 44 1 13.1876 0.8104 -3.0870 45 1 7.6056 4.3391 -2.4393 46 1 8.3467 4.5054 -4.9764 47 1 7.8432 5.9940 -0.6179 48 1 8.4802 5.6323 1.0146 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129703423.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:46 Heat of formation + Delta-G solvation = 15.622482 kcal Electronic energy + Delta-G solvation = -29833.599022 eV Core-core repulsion = 25732.804002 eV Total energy + Delta-G solvation = -4100.795020 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.22319 -41.21781 -39.22398 -38.83480 -35.99378 -35.67092 -34.86533 -33.08491 -31.94101 -31.51053 -30.22617 -29.12166 -27.46606 -26.07316 -25.42988 -24.26579 -23.57704 -22.96675 -22.09969 -21.45932 -20.26451 -19.39562 -18.76348 -18.12713 -17.40524 -17.23153 -17.07105 -16.87812 -16.68684 -16.33093 -15.93998 -15.78521 -15.63531 -15.31561 -15.23389 -14.71746 -14.60763 -14.10248 -13.85549 -13.67436 -13.48339 -13.45941 -13.03281 -12.91194 -12.72910 -12.60636 -12.58656 -12.46710 -12.40935 -12.28305 -12.13581 -11.90457 -11.87058 -11.78176 -11.58288 -11.20542 -10.92063 -10.88308 -10.60576 -10.26580 -9.75479 -9.15230 -7.95091 -5.29663 0.72124 1.44373 1.49223 1.51247 1.57498 1.58205 1.70480 1.83843 2.53654 2.82558 3.01379 3.26696 3.50476 3.61734 3.69928 3.72938 3.94995 3.97577 4.04841 4.11508 4.21494 4.28416 4.30906 4.35120 4.36834 4.40165 4.51189 4.53748 4.55222 4.58601 4.72568 4.75179 4.81571 4.85304 4.86640 4.92989 4.98696 5.05578 5.12817 5.28965 5.29652 5.40147 5.50955 5.73609 6.20792 6.24826 6.39498 7.08001 7.29911 7.61818 7.98912 8.19858 9.26061 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009590 B = 0.003040 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.142282 B = 9209.401455 C =10806.711939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.058 3.942 4 C -0.114 4.114 5 C -0.091 4.091 6 C -0.134 4.134 7 C 0.531 3.469 8 O -0.574 6.574 9 N -0.615 5.615 10 C 0.085 3.915 11 C 0.156 3.844 12 H 0.111 0.889 13 N -0.728 5.728 14 C -0.248 4.248 15 H 0.093 0.907 16 C -0.070 4.070 17 N -0.965 5.965 18 Si 0.973 3.027 19 H -0.306 1.306 20 H -0.276 1.276 21 H -0.272 1.272 22 C 0.108 3.892 23 H 0.146 0.854 24 N -0.263 5.263 25 C -0.037 4.037 26 C -0.065 4.065 27 N -0.309 5.309 28 N -0.107 5.107 29 C 0.113 3.887 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.057 0.943 42 H 0.093 0.907 43 H 0.378 0.622 44 H 0.249 0.751 45 H 0.196 0.804 46 H 0.214 0.786 47 H 0.087 0.913 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.387 3.181 8.797 23.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C -0.018 4.018 4 C -0.152 4.152 5 C -0.129 4.129 6 C -0.173 4.173 7 C 0.322 3.678 8 O -0.453 6.453 9 N -0.349 5.349 10 C -0.041 4.041 11 C 0.044 3.956 12 H 0.129 0.871 13 N -0.368 5.368 14 C -0.379 4.379 15 H 0.110 0.890 16 C -0.263 4.263 17 N -0.613 5.613 18 Si 0.802 3.198 19 H -0.233 1.233 20 H -0.202 1.202 21 H -0.198 1.198 22 C 0.005 3.995 23 H 0.164 0.836 24 N -0.057 5.057 25 C -0.188 4.188 26 C -0.222 4.222 27 N -0.174 5.174 28 N -0.086 5.086 29 C -0.011 4.011 30 H 0.067 0.933 31 H 0.113 0.887 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.120 0.880 40 H 0.130 0.870 41 H 0.076 0.924 42 H 0.111 0.889 43 H 0.212 0.788 44 H 0.057 0.943 45 H 0.213 0.787 46 H 0.230 0.770 47 H 0.105 0.895 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -20.121 3.780 8.796 22.283 hybrid contribution -0.344 -0.925 -0.395 1.063 sum -20.465 2.854 8.401 22.306 Atomic orbital electron populations 1.22910 0.79678 1.03712 1.00801 1.87834 1.21379 1.29096 1.95611 1.22616 0.94151 0.84191 1.00880 1.21468 0.93088 0.97084 1.03563 1.21129 0.92435 0.96123 1.03203 1.21687 0.96633 0.92918 1.06070 1.20813 0.79828 0.92431 0.74701 1.90696 1.60535 1.42146 1.51954 1.48617 1.05200 1.07951 1.73139 1.23055 0.88604 0.89742 1.02701 1.21903 0.89893 0.87607 0.96180 0.87116 1.42600 1.48620 1.35993 1.09579 1.19623 1.17261 1.06005 0.95055 0.88961 1.25647 1.02011 1.02761 0.95915 1.69888 1.42237 1.43696 1.05528 0.85231 0.78522 0.79441 0.76605 1.23280 1.20173 1.19771 1.23609 1.01228 1.01866 0.72831 0.83641 1.47375 1.06842 1.42509 1.08990 1.23739 0.95362 1.07906 0.91833 1.24100 0.93023 1.06652 0.98471 1.75042 1.12599 1.17789 1.12012 1.78321 1.14525 1.20562 0.95161 1.22568 0.87761 0.87343 1.03440 0.93325 0.88711 0.93173 0.92512 0.92798 0.91203 0.90753 0.91332 0.91726 0.88001 0.86998 0.92449 0.88901 0.78788 0.94272 0.78680 0.76975 0.89469 0.85359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.42 -7.87 10.70 -148.98 -1.59 -9.47 16 3 C 0.06 0.90 5.94 71.98 0.43 1.33 16 4 C -0.11 -1.76 5.58 30.60 0.17 -1.58 16 5 C -0.09 -1.48 4.50 30.60 0.14 -1.34 16 6 C -0.13 -2.28 4.89 29.85 0.15 -2.13 16 7 C 0.53 11.81 7.62 87.66 0.67 12.48 16 8 O -0.57 -16.06 16.24 -3.02 -0.05 -16.11 16 9 N -0.61 -13.24 2.18 -811.41 -1.77 -15.01 16 10 C 0.08 2.14 5.87 86.73 0.51 2.65 16 11 C 0.16 4.78 3.46 46.18 0.16 4.94 16 12 H 0.11 2.99 8.11 -2.39 -0.02 2.97 16 13 N -0.73 -32.82 5.12 -317.33 -1.63 -34.44 16 14 C -0.25 -12.42 9.97 84.03 0.84 -11.58 16 15 H 0.09 4.18 7.83 -2.91 -0.02 4.16 16 16 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 17 N -0.96 -58.97 13.06 21.65 0.28 -58.68 16 18 Si 0.97 44.15 29.55 68.60 2.03 46.18 16 19 H -0.31 -14.55 7.11 99.48 0.71 -13.84 16 20 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 22 C 0.11 2.87 4.07 46.45 0.19 3.06 16 23 H 0.15 3.48 8.14 -2.39 -0.02 3.46 16 24 N -0.26 -8.86 2.44 -320.26 -0.78 -9.64 16 25 C -0.04 -1.13 10.02 83.49 0.84 -0.29 16 26 C -0.06 -2.15 12.05 83.73 1.01 -1.14 16 27 N -0.31 -13.00 12.41 -58.25 -0.72 -13.72 16 28 N -0.11 -4.50 12.23 37.02 0.45 -4.05 16 29 C 0.11 2.27 5.88 86.92 0.51 2.78 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.07 1.16 8.10 -2.39 -0.02 1.15 16 38 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 39 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.11 1.58 8.14 -2.39 -0.02 1.57 16 41 H 0.06 1.74 8.03 -2.39 -0.02 1.72 16 42 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.38 19.56 5.94 -92.71 -0.55 19.01 16 44 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 45 H 0.20 5.03 6.80 -2.91 -0.02 5.02 16 46 H 0.21 5.29 8.06 -2.91 -0.02 5.27 16 47 H 0.09 1.87 7.76 -2.39 -0.02 1.85 16 48 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -74.95 396.38 3.94 -71.01 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: 0.40 Total: 36.61 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 7.32 Total: 7.32 kcal Atomic # 7 Polarization: -131.39 SS G_CDS: -4.17 Total: -135.55 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -1.64 Total: -25.57 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -74.95 3.94 -71.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129703423.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.635 kcal (2) G-P(sol) polarization free energy of solvation -74.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds