Wall clock time and date at job start Tue Mar 31 2020 20:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.46957 * 2 1 4 4 C 1.46497 * 119.99709 * 269.99802 * 3 2 1 5 5 C 1.50703 * 109.46940 * 270.00428 * 4 3 2 6 6 H 1.08001 * 120.00307 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99844 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99940 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99670 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47202 * 89.99696 * 9 7 5 11 11 H 1.48505 * 109.46753 * 209.99737 * 9 7 5 12 12 H 1.48498 * 109.47142 * 329.99496 * 9 7 5 13 13 C 1.34770 * 120.00060 * 89.99965 * 3 2 1 14 14 O 1.21278 * 120.00162 * 179.97438 * 13 3 2 15 15 C 1.50705 * 120.00083 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.47085 * 180.02562 * 15 13 3 17 17 C 1.46902 * 111.00141 * 180.02562 * 16 15 13 18 18 C 1.52998 * 109.47252 * 180.02562 * 17 16 15 19 19 N 1.46494 * 109.47251 * 179.97438 * 18 17 16 20 20 C 1.34780 * 120.00332 * 179.97438 * 19 18 17 21 21 O 1.21597 * 119.99539 * 0.02562 * 20 19 18 22 22 C 1.47426 * 119.99934 * 180.02562 * 20 19 18 23 23 C 1.38045 * 126.41703 * 0.29679 * 22 20 19 24 24 N 1.34260 * 107.41631 * 180.10980 * 23 22 20 25 25 H 0.97001 * 125.75636 * 179.91158 * 24 23 22 26 26 N 1.39936 * 108.49307 * 359.63805 * 24 23 22 27 27 C 1.30454 * 108.89484 * 0.23337 * 26 24 23 28 28 C 1.50698 * 125.98534 * 179.97438 * 27 26 24 29 29 H 1.09002 * 109.47049 * 60.00264 * 1 2 3 30 30 H 1.09000 * 109.47093 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47359 * 300.00373 * 1 2 3 32 32 H 1.08990 * 109.47159 * 239.99736 * 2 1 3 33 33 H 1.08998 * 109.46612 * 119.99578 * 2 1 3 34 34 H 1.08996 * 109.47524 * 29.99947 * 4 3 2 35 35 H 1.08995 * 109.47077 * 150.00617 * 4 3 2 36 36 H 0.97000 * 119.99401 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.46925 * 60.00717 * 15 13 3 38 38 H 1.08995 * 109.47121 * 299.99987 * 15 13 3 39 39 H 1.00906 * 111.00332 * 303.95904 * 16 15 13 40 40 H 1.08994 * 109.46963 * 60.00169 * 17 16 15 41 41 H 1.09002 * 109.46721 * 299.99793 * 17 16 15 42 42 H 1.09008 * 109.46913 * 59.99995 * 18 17 16 43 43 H 1.08999 * 109.47280 * 300.00304 * 18 17 16 44 44 H 0.97006 * 120.00118 * 0.02562 * 19 18 17 45 45 H 1.08000 * 126.28929 * 359.97438 * 23 22 20 46 46 H 1.09005 * 109.47296 * 90.02044 * 28 27 26 47 47 H 1.09003 * 109.47048 * 210.02233 * 28 27 26 48 48 H 1.08996 * 109.47509 * 330.02073 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3903 -2.8775 8 7 3.3495 3.1264 -3.6176 9 14 5.9139 2.0972 -3.4163 10 1 5.9777 0.8765 -4.2594 11 1 6.3929 3.2649 -4.1989 12 1 6.7737 1.9174 -2.2190 13 6 2.2429 2.0166 1.1671 14 8 2.6476 3.1599 1.1672 15 6 1.9912 1.3064 2.4723 16 7 2.3089 2.2066 3.5888 17 6 2.0756 1.5464 4.8802 18 6 2.4161 2.5131 6.0161 19 7 2.1828 1.8550 7.3039 20 6 2.4172 2.5197 8.4528 21 8 2.8219 3.6658 8.4202 22 6 2.1829 1.8570 9.7487 23 6 1.7331 0.5659 9.9395 24 7 1.6548 0.3593 11.2638 25 1 1.3662 -0.4612 11.6934 26 7 2.0658 1.5249 11.9200 27 6 2.3822 2.4227 11.0280 28 6 2.8737 3.8186 11.3123 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5818 1.6877 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 3.6756 3.5168 -4.4435 37 1 2.6212 0.4188 2.5303 38 1 0.9432 1.0126 2.5298 39 1 3.2573 2.5449 3.5221 40 1 2.7067 0.6609 4.9548 41 1 1.0283 1.2536 4.9545 42 1 1.7846 3.3985 5.9413 43 1 3.4632 2.8065 5.9420 44 1 1.8603 0.9405 7.3299 45 1 1.4871 -0.1462 9.1657 46 1 3.9616 3.8139 11.3808 47 1 2.5632 4.4842 10.5069 48 1 2.4519 4.1674 12.2549 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132138438.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:36 Heat of formation + Delta-G solvation = 1.096830 kcal Electronic energy + Delta-G solvation = -27918.659384 eV Core-core repulsion = 23817.234484 eV Total energy + Delta-G solvation = -4101.424899 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.85500 -39.45876 -39.10194 -36.54558 -35.27218 -34.41863 -33.34294 -32.79129 -31.24864 -30.12021 -29.39710 -28.32067 -27.30658 -25.34073 -23.53446 -23.02691 -22.42376 -22.10950 -20.85525 -20.10003 -18.97144 -18.36783 -16.91218 -16.53537 -16.36935 -16.21329 -16.12457 -15.71931 -15.44277 -14.98648 -14.79542 -14.44666 -14.14996 -13.98709 -13.66802 -13.42753 -13.27922 -13.26124 -13.19918 -13.12564 -12.43054 -12.39221 -12.19829 -11.99501 -11.76631 -11.60316 -11.45408 -11.37701 -11.17592 -10.91382 -10.75723 -10.53316 -10.13039 -10.12555 -9.97040 -9.63352 -9.44217 -9.15231 -8.94760 -8.43470 -8.42553 -7.65490 -6.04061 -4.08872 1.01728 1.75303 2.19725 2.85073 3.16156 3.29395 3.36347 3.39069 3.45112 3.78578 4.04015 4.11826 4.37379 4.46487 4.61245 4.71764 4.85515 4.95276 4.98074 5.07754 5.21548 5.23683 5.30477 5.40631 5.42489 5.47414 5.51043 5.63134 5.64797 5.71396 5.77290 5.82196 5.99327 6.09339 6.16118 6.21165 6.45985 6.57627 6.76102 7.02913 7.10725 7.27454 7.30531 7.46855 7.55871 7.92517 8.03569 8.23947 8.43480 8.90737 9.11677 9.56237 11.03922 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019819 B = 0.001696 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.444873 B =16502.951734 C =17244.024669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.503 3.497 14 O -0.527 6.527 15 C 0.043 3.957 16 N -0.669 5.669 17 C 0.051 3.949 18 C 0.121 3.879 19 N -0.728 5.728 20 C 0.593 3.407 21 O -0.535 6.535 22 C -0.287 4.287 23 C 0.105 3.895 24 N -0.461 5.461 25 H 0.444 0.556 26 N -0.301 5.301 27 C 0.136 3.864 28 C -0.081 4.081 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.044 0.956 36 H 0.263 0.737 37 H 0.054 0.946 38 H 0.095 0.905 39 H 0.356 0.644 40 H 0.034 0.966 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.395 0.605 45 H 0.186 0.814 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.862 -11.914 26.837 30.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.289 3.711 14 O -0.403 6.403 15 C -0.089 4.089 16 N -0.303 5.303 17 C -0.079 4.079 18 C -0.002 4.002 19 N -0.381 5.381 20 C 0.380 3.620 21 O -0.412 6.412 22 C -0.302 4.302 23 C -0.048 4.048 24 N -0.165 5.165 25 H 0.289 0.711 26 N -0.124 5.124 27 C -0.032 4.032 28 C -0.139 4.139 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.113 0.887 39 H 0.176 0.824 40 H 0.052 0.948 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.228 0.772 45 H 0.203 0.797 46 H 0.100 0.900 47 H 0.116 0.884 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.050 -10.265 27.827 30.486 hybrid contribution 1.334 -1.916 -1.146 2.601 sum -5.715 -12.181 26.681 29.882 Atomic orbital electron populations 1.22229 0.96810 1.01311 1.02434 1.21401 0.93506 0.84331 1.02519 1.48249 1.64040 1.13169 1.07709 1.19257 0.96171 0.93720 0.78075 1.21428 0.96954 1.31898 1.06249 0.92574 1.24940 0.97821 0.94927 0.96450 1.69931 1.35674 1.33355 1.14296 0.86504 0.84727 0.77652 0.78560 1.20707 1.21070 1.19952 1.20141 0.79032 0.87107 0.84855 1.90689 1.45004 1.17684 1.86883 1.21898 1.02336 0.94220 0.90463 1.59971 1.33169 1.37515 0.99615 1.22072 1.01577 0.95088 0.89202 1.21260 1.02370 0.96183 0.80417 1.45708 1.69309 1.17271 1.05771 1.17185 0.77022 0.85458 0.82319 1.90780 1.45949 1.17263 1.87179 1.20318 1.19766 0.95436 0.94674 1.23159 0.96969 0.97168 0.87545 1.46120 1.51630 1.14215 1.04544 0.71087 1.77220 1.22338 0.92565 1.20246 1.22547 0.94755 0.96634 0.89215 1.20390 1.01576 0.88458 1.03507 0.91971 0.92268 0.93036 0.89981 0.91985 0.95060 0.93834 0.92721 0.92852 0.88693 0.82444 0.94789 0.90426 0.89993 0.91136 0.77159 0.79704 0.90002 0.88380 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 37.16 0.38 -1.75 16 2 C 0.11 1.61 5.93 -4.04 -0.02 1.59 16 3 N -0.60 -12.23 2.46 -175.06 -0.43 -12.66 16 4 C 0.25 6.38 5.16 -5.19 -0.03 6.36 16 5 C -0.53 -14.79 9.39 -34.44 -0.32 -15.11 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 9 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.50 10.12 7.71 -10.99 -0.08 10.04 16 14 O -0.53 -13.13 15.78 5.56 0.09 -13.04 16 15 C 0.04 0.60 4.72 -4.97 -0.02 0.57 16 16 N -0.67 -8.84 6.13 -115.06 -0.70 -9.55 16 17 C 0.05 0.45 5.80 -3.82 -0.02 0.42 16 18 C 0.12 1.17 5.93 -4.05 -0.02 1.15 16 19 N -0.73 -5.62 5.54 -61.39 -0.34 -5.96 16 20 C 0.59 6.17 7.81 -12.52 -0.10 6.07 16 21 O -0.53 -7.59 14.92 5.28 0.08 -7.51 16 22 C -0.29 -2.46 6.13 -105.07 -0.64 -3.11 16 23 C 0.10 0.49 11.52 -16.56 -0.19 0.30 16 24 N -0.46 -2.38 7.29 30.85 0.22 -2.16 16 25 H 0.44 0.68 8.96 -182.72 -1.64 -0.96 16 26 N -0.30 -2.72 12.63 33.90 0.43 -2.29 16 27 C 0.14 1.31 7.26 -82.02 -0.60 0.72 16 28 C -0.08 -0.69 9.92 36.00 0.36 -0.33 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.61 7.22 -51.93 -0.37 0.24 16 32 H 0.08 1.30 8.07 -51.93 -0.42 0.89 16 33 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 34 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.05 0.64 7.40 -51.93 -0.38 0.25 16 38 H 0.09 1.12 7.18 -51.93 -0.37 0.75 16 39 H 0.36 5.08 8.43 -39.29 -0.33 4.75 16 40 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.95 8.14 -51.92 -0.42 0.52 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.39 1.64 7.40 -40.82 -0.30 1.34 16 45 H 0.19 0.01 7.46 -52.49 -0.39 -0.38 16 46 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.10 0.96 6.56 -51.93 -0.34 0.62 16 48 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 403.74 15.07 6.08 6.08 Total: -1.00 -38.36 403.74 -8.89 -47.25 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -8.62 Total: 0.29 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: -1.42 Total: 8.54 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: -0.09 Total: -58.38 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: 0.17 Total: -20.55 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.36 -8.89 -47.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132138438.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.350 kcal (2) G-P(sol) polarization free energy of solvation -38.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds