Wall clock time and date at job start Tue Mar 31 2020 20:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.46957 * 2 1 4 4 C 1.46497 * 119.99709 * 269.99802 * 3 2 1 5 5 C 1.50703 * 109.46940 * 270.00428 * 4 3 2 6 6 H 1.08001 * 120.00307 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99844 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99940 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99670 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47202 * 89.99696 * 9 7 5 11 11 H 1.48505 * 109.46753 * 209.99737 * 9 7 5 12 12 H 1.48498 * 109.47142 * 329.99496 * 9 7 5 13 13 C 1.34770 * 120.00060 * 89.99965 * 3 2 1 14 14 O 1.21278 * 120.00162 * 179.97438 * 13 3 2 15 15 C 1.50705 * 120.00083 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.47085 * 180.02562 * 15 13 3 17 17 C 1.46902 * 111.00141 * 180.02562 * 16 15 13 18 18 C 1.52998 * 109.47252 * 180.02562 * 17 16 15 19 19 N 1.46494 * 109.47251 * 179.97438 * 18 17 16 20 20 C 1.34780 * 120.00332 * 179.97438 * 19 18 17 21 21 O 1.21597 * 119.99539 * 0.02562 * 20 19 18 22 22 C 1.47426 * 119.99934 * 180.02562 * 20 19 18 23 23 C 1.38045 * 126.41703 * 0.29679 * 22 20 19 24 24 N 1.34260 * 107.41631 * 180.10980 * 23 22 20 25 25 H 0.97001 * 125.75636 * 179.91158 * 24 23 22 26 26 N 1.39936 * 108.49307 * 359.63805 * 24 23 22 27 27 C 1.30454 * 108.89484 * 0.23337 * 26 24 23 28 28 C 1.50698 * 125.98534 * 179.97438 * 27 26 24 29 29 H 1.09002 * 109.47049 * 60.00264 * 1 2 3 30 30 H 1.09000 * 109.47093 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47359 * 300.00373 * 1 2 3 32 32 H 1.08990 * 109.47159 * 239.99736 * 2 1 3 33 33 H 1.08998 * 109.46612 * 119.99578 * 2 1 3 34 34 H 1.08996 * 109.47524 * 29.99947 * 4 3 2 35 35 H 1.08995 * 109.47077 * 150.00617 * 4 3 2 36 36 H 0.97000 * 119.99401 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.46925 * 60.00717 * 15 13 3 38 38 H 1.08995 * 109.47121 * 299.99987 * 15 13 3 39 39 H 1.00906 * 111.00332 * 303.95904 * 16 15 13 40 40 H 1.08994 * 109.46963 * 60.00169 * 17 16 15 41 41 H 1.09002 * 109.46721 * 299.99793 * 17 16 15 42 42 H 1.09008 * 109.46913 * 59.99995 * 18 17 16 43 43 H 1.08999 * 109.47280 * 300.00304 * 18 17 16 44 44 H 0.97006 * 120.00118 * 0.02562 * 19 18 17 45 45 H 1.08000 * 126.28929 * 359.97438 * 23 22 20 46 46 H 1.09005 * 109.47296 * 90.02044 * 28 27 26 47 47 H 1.09003 * 109.47048 * 210.02233 * 28 27 26 48 48 H 1.08996 * 109.47509 * 330.02073 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3903 -2.8775 8 7 3.3495 3.1264 -3.6176 9 14 5.9139 2.0972 -3.4163 10 1 5.9777 0.8765 -4.2594 11 1 6.3929 3.2649 -4.1989 12 1 6.7737 1.9174 -2.2190 13 6 2.2429 2.0166 1.1671 14 8 2.6476 3.1599 1.1672 15 6 1.9912 1.3064 2.4723 16 7 2.3089 2.2066 3.5888 17 6 2.0756 1.5464 4.8802 18 6 2.4161 2.5131 6.0161 19 7 2.1828 1.8550 7.3039 20 6 2.4172 2.5197 8.4528 21 8 2.8219 3.6658 8.4202 22 6 2.1829 1.8570 9.7487 23 6 1.7331 0.5659 9.9395 24 7 1.6548 0.3593 11.2638 25 1 1.3662 -0.4612 11.6934 26 7 2.0658 1.5249 11.9200 27 6 2.3822 2.4227 11.0280 28 6 2.8737 3.8186 11.3123 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5818 1.6877 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 3.6756 3.5168 -4.4435 37 1 2.6212 0.4188 2.5303 38 1 0.9432 1.0126 2.5298 39 1 3.2573 2.5449 3.5221 40 1 2.7067 0.6609 4.9548 41 1 1.0283 1.2536 4.9545 42 1 1.7846 3.3985 5.9413 43 1 3.4632 2.8065 5.9420 44 1 1.8603 0.9405 7.3299 45 1 1.4871 -0.1462 9.1657 46 1 3.9616 3.8139 11.3808 47 1 2.5632 4.4842 10.5069 48 1 2.4519 4.1674 12.2549 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132138438.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:35 Heat of formation + Delta-G solvation = -31.057298 kcal Electronic energy + Delta-G solvation = -27920.053691 eV Core-core repulsion = 23817.234484 eV Total energy + Delta-G solvation = -4102.819207 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.39464 -40.70207 -40.15166 -37.52064 -36.81305 -35.35527 -34.83548 -33.92154 -31.98115 -31.55074 -30.34732 -29.12234 -28.75073 -26.66114 -24.70329 -24.18144 -23.62832 -23.04188 -21.49772 -20.73430 -19.95843 -19.38086 -18.59989 -17.91812 -17.46008 -17.33253 -17.11399 -16.70323 -16.49069 -16.22684 -15.86164 -15.34830 -15.19224 -14.95747 -14.83028 -14.60110 -14.44486 -14.32857 -14.06570 -13.88664 -13.74232 -13.49067 -13.40103 -13.19315 -13.03780 -12.96455 -12.64438 -12.59100 -12.44557 -12.34176 -12.12469 -11.98133 -11.82259 -11.69596 -10.93080 -10.63071 -10.53677 -10.52841 -10.18218 -9.73233 -9.40449 -9.35418 -8.20797 -6.35774 0.56447 1.08151 1.36447 1.39993 1.49875 1.80808 1.91504 2.09657 2.35203 2.45998 2.49850 3.08454 3.37526 3.52951 3.76401 3.78291 3.92499 4.14444 4.19420 4.23506 4.32229 4.39944 4.43768 4.48897 4.51400 4.58706 4.72131 4.74857 4.88684 4.96325 4.97762 4.99046 5.04157 5.04422 5.09463 5.25448 5.42282 5.44617 5.48681 5.60450 5.86469 5.97499 6.08856 6.28036 6.28717 6.48054 6.70408 6.73066 6.88135 7.30808 7.35835 7.57164 8.85992 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019819 B = 0.001696 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.444873 B =16502.951734 C =17244.024669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.262 3.738 5 C -0.541 4.541 6 H 0.055 0.945 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.490 3.510 14 O -0.590 6.590 15 C 0.062 3.938 16 N -0.694 5.694 17 C 0.061 3.939 18 C 0.128 3.872 19 N -0.709 5.709 20 C 0.590 3.410 21 O -0.586 6.586 22 C -0.322 4.322 23 C 0.143 3.857 24 N -0.447 5.447 25 H 0.462 0.538 26 N -0.330 5.330 27 C 0.115 3.885 28 C -0.078 4.078 29 H 0.033 0.967 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.020 0.980 35 H -0.007 1.007 36 H 0.266 0.734 37 H 0.086 0.914 38 H 0.126 0.874 39 H 0.345 0.655 40 H 0.062 0.938 41 H 0.101 0.899 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.416 0.584 45 H 0.241 0.759 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.352 -16.400 28.188 33.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.140 3.860 5 C -0.579 4.579 6 H 0.073 0.927 7 C -0.194 4.194 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.187 1.187 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.278 3.722 14 O -0.470 6.470 15 C -0.069 4.069 16 N -0.328 5.328 17 C -0.067 4.067 18 C 0.003 3.997 19 N -0.362 5.362 20 C 0.378 3.622 21 O -0.467 6.467 22 C -0.338 4.338 23 C -0.012 4.012 24 N -0.153 5.153 25 H 0.310 0.690 26 N -0.154 5.154 27 C -0.052 4.052 28 C -0.137 4.137 29 H 0.052 0.948 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.038 0.962 35 H 0.011 0.989 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.144 0.856 39 H 0.163 0.837 40 H 0.080 0.920 41 H 0.119 0.881 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.254 0.746 45 H 0.257 0.743 46 H 0.100 0.900 47 H 0.098 0.902 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.595 -14.873 29.220 33.656 hybrid contribution 1.413 -0.570 -1.527 2.157 sum -6.182 -15.443 27.693 32.305 Atomic orbital electron populations 1.22164 0.94668 1.03478 1.01650 1.21763 0.95240 0.81223 1.04026 1.48281 1.64124 1.15164 1.06103 1.18660 0.95194 0.91441 0.80667 1.21724 0.97911 1.31861 1.06437 0.92713 1.25889 1.02408 0.94535 0.96568 1.70061 1.37798 1.34245 1.14773 0.85406 0.79001 0.78124 0.78203 1.18740 1.20887 1.19705 1.21401 0.77365 0.86687 0.86709 1.90655 1.47702 1.20692 1.87949 1.21805 1.04683 0.93922 0.86514 1.59945 1.32700 1.38802 1.01305 1.22068 1.03481 0.94948 0.86244 1.21040 1.00740 0.96096 0.81829 1.45427 1.68461 1.17989 1.04294 1.17527 0.76214 0.84968 0.83450 1.90756 1.48427 1.19590 1.87906 1.20266 1.22842 0.97357 0.93288 1.23838 0.93151 0.96116 0.88095 1.46171 1.50305 1.13896 1.04898 0.68970 1.77145 1.23403 0.93772 1.21034 1.22696 0.95358 0.96965 0.90189 1.20308 1.01635 0.88573 1.03188 0.94751 0.88516 0.91884 0.91240 0.87670 0.96193 0.98912 0.92500 0.89644 0.85630 0.83685 0.91956 0.88103 0.92588 0.92980 0.74594 0.74334 0.90000 0.90239 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 10.24 71.98 0.74 -2.87 16 2 C 0.10 2.76 5.93 86.38 0.51 3.27 16 3 N -0.60 -24.72 2.46 -826.17 -2.03 -26.75 16 4 C 0.26 14.18 5.16 85.63 0.44 14.62 16 5 C -0.54 -31.14 9.39 25.60 0.24 -30.90 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 7 C 0.00 0.28 5.46 84.66 0.46 0.74 16 8 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 9 Si 0.97 45.03 29.54 68.60 2.03 47.05 16 10 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 13 C 0.49 19.60 7.71 87.66 0.68 20.28 16 14 O -0.59 -30.68 15.78 -3.02 -0.05 -30.73 16 15 C 0.06 1.51 4.72 85.56 0.40 1.92 16 16 N -0.69 -17.05 6.13 -517.94 -3.17 -20.22 16 17 C 0.06 0.86 5.80 86.30 0.50 1.36 16 18 C 0.13 2.32 5.93 86.38 0.51 2.83 16 19 N -0.71 -9.30 5.54 -466.38 -2.59 -11.89 16 20 C 0.59 11.96 7.81 86.66 0.68 12.64 16 21 O -0.59 -17.55 14.92 -4.02 -0.06 -17.61 16 22 C -0.32 -5.06 6.13 -20.15 -0.12 -5.19 16 23 C 0.14 0.77 11.52 84.28 0.97 1.74 16 24 N -0.45 -3.20 7.29 -56.32 -0.41 -3.61 16 25 H 0.46 -0.30 8.96 -213.43 -1.91 -2.22 16 26 N -0.33 -5.57 12.63 -46.68 -0.59 -6.16 16 27 C 0.12 2.20 7.26 43.51 0.32 2.52 16 28 C -0.08 -1.45 9.92 71.24 0.71 -0.75 16 29 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.10 1.46 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.27 7.22 -2.38 -0.02 1.25 16 32 H 0.07 2.10 8.07 -2.39 -0.02 2.09 16 33 H 0.11 2.03 6.44 -2.39 -0.02 2.01 16 34 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 35 H -0.01 -0.46 7.42 -2.39 -0.02 -0.48 16 36 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.09 1.57 7.40 -2.39 -0.02 1.55 16 38 H 0.13 2.31 7.18 -2.39 -0.02 2.29 16 39 H 0.34 9.74 8.43 -89.69 -0.76 8.98 16 40 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 43 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.42 1.57 7.40 -92.70 -0.69 0.88 16 45 H 0.24 -1.56 7.46 -2.91 -0.02 -1.59 16 46 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 47 H 0.08 1.75 6.56 -2.39 -0.02 1.74 16 48 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -92.85 403.74 -1.89 -94.75 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -2.34 Total: 9.43 kcal Atomic # 6 Polarization: 15.18 SS G_CDS: 7.03 Total: 22.22 kcal Atomic # 7 Polarization: -116.60 SS G_CDS: -8.50 Total: -125.11 kcal Atomic # 8 Polarization: -48.23 SS G_CDS: -0.11 Total: -48.34 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -92.85 -1.89 -94.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132138438.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.691 kcal (2) G-P(sol) polarization free energy of solvation -92.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds