Wall clock time and date at job start Tue Mar 31 2020 20:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47116 * 2 1 4 4 C 1.46502 * 119.99714 * 270.00146 * 3 2 1 5 5 C 1.50698 * 109.47061 * 269.99882 * 4 3 2 6 6 H 1.07998 * 119.99838 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99904 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99874 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00254 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47112 * 90.00427 * 9 7 5 11 11 H 1.48493 * 109.47374 * 210.00602 * 9 7 5 12 12 H 1.48502 * 109.47100 * 330.00856 * 9 7 5 13 13 C 1.34774 * 120.00161 * 89.99916 * 3 2 1 14 14 O 1.21277 * 120.00186 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99755 * 359.97438 * 13 3 2 16 16 N 1.46896 * 109.47012 * 179.97438 * 15 13 3 17 17 C 1.46905 * 110.99852 * 180.02562 * 16 15 13 18 18 C 1.53006 * 109.46996 * 180.02562 * 17 16 15 19 19 N 1.46501 * 109.47157 * 180.02562 * 18 17 16 20 20 C 1.34769 * 119.99854 * 180.02562 * 19 18 17 21 21 O 1.21285 * 120.00559 * 359.97438 * 20 19 18 22 22 C 1.50699 * 120.00037 * 180.02562 * 20 19 18 23 23 C 1.50704 * 109.47511 * 179.97438 * 22 20 19 24 24 C 1.34664 * 126.58651 * 275.03761 * 23 22 20 25 25 N 1.34134 * 108.01786 * 179.74146 * 24 23 22 26 26 C 1.30496 * 109.25675 * 0.37372 * 25 24 23 27 27 N 1.35047 * 108.70161 * 359.62603 * 26 25 24 28 28 H 0.96997 * 126.40535 * 180.25138 * 27 26 25 29 29 H 1.09006 * 109.46528 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46839 * 299.99733 * 1 2 3 31 31 H 1.08996 * 109.46872 * 60.00396 * 1 2 3 32 32 H 1.09006 * 109.46858 * 240.00124 * 2 1 3 33 33 H 1.08995 * 109.47088 * 120.00109 * 2 1 3 34 34 H 1.08994 * 109.47560 * 30.00104 * 4 3 2 35 35 H 1.09001 * 109.46793 * 150.00063 * 4 3 2 36 36 H 0.97002 * 120.00107 * 179.97438 * 8 7 5 37 37 H 1.09010 * 109.47011 * 60.00370 * 15 13 3 38 38 H 1.09000 * 109.47415 * 299.99977 * 15 13 3 39 39 H 1.00898 * 111.00518 * 303.95924 * 16 15 13 40 40 H 1.08997 * 109.47379 * 60.00835 * 17 16 15 41 41 H 1.08991 * 109.47307 * 299.99851 * 17 16 15 42 42 H 1.08999 * 109.47235 * 60.00051 * 18 17 16 43 43 H 1.09002 * 109.47410 * 300.00423 * 18 17 16 44 44 H 0.96999 * 119.99913 * 359.97438 * 19 18 17 45 45 H 1.08992 * 109.47512 * 59.99585 * 22 20 19 46 46 H 1.09004 * 109.47075 * 299.99537 * 22 20 19 47 47 H 1.07998 * 125.99171 * 359.92955 * 24 23 22 48 48 H 1.08002 * 125.65353 * 179.89694 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1493 2.3904 -2.8775 8 7 5.3912 2.1833 -3.2574 9 14 3.0130 3.4359 -3.9288 10 1 3.1156 4.8560 -3.5071 11 1 3.4065 3.3135 -5.3554 12 1 1.6134 2.9693 -3.7596 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9912 1.3064 2.4723 16 7 2.3101 2.2061 3.5888 17 6 2.0767 1.5458 4.8801 18 6 2.4185 2.5121 6.0162 19 7 2.1863 1.8534 7.3040 20 6 2.4209 2.5180 8.4527 21 8 2.8247 3.6612 8.4204 22 6 2.1827 1.8403 9.7775 23 6 2.5192 2.7921 10.8964 24 6 3.7376 3.0071 11.4281 25 7 3.6119 3.9296 12.3938 26 6 2.3607 4.2885 12.4859 27 7 1.6452 3.6046 11.5671 28 1 0.6906 3.6761 11.4111 29 1 -0.3632 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.5817 1.6877 -2.0284 35 1 2.0955 3.1410 -1.1384 36 1 5.7173 2.5738 -4.0834 37 1 2.6212 0.4186 2.5302 38 1 0.9432 1.0126 2.5298 39 1 3.2586 2.5436 3.5218 40 1 2.7072 0.6598 4.9544 41 1 1.0293 1.2538 4.9548 42 1 1.7877 3.3979 5.9418 43 1 3.4659 2.8046 5.9417 44 1 1.8630 0.9393 7.3299 45 1 2.8143 0.9552 9.8516 46 1 1.1356 1.5467 9.8523 47 1 4.6555 2.5240 11.1276 48 1 1.9637 5.0155 13.1790 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134407006.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:02 Heat of formation + Delta-G solvation = -6.009658 kcal Electronic energy + Delta-G solvation = -27731.302425 eV Core-core repulsion = 23629.569366 eV Total energy + Delta-G solvation = -4101.733060 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.39645 -39.92368 -39.27711 -36.68174 -35.40974 -34.45373 -33.23058 -32.73070 -32.27427 -30.45245 -29.86636 -28.11417 -27.18026 -25.23984 -23.02245 -22.59194 -21.99858 -21.92840 -21.48988 -20.74240 -18.59264 -18.28127 -17.54035 -16.95196 -16.55639 -16.47245 -16.31564 -15.79015 -15.51432 -15.12991 -14.84668 -14.45928 -14.22882 -14.15281 -13.84344 -13.70124 -13.52825 -13.47701 -13.36125 -13.32638 -12.70841 -12.52343 -12.34871 -12.21642 -11.91208 -11.72510 -11.63516 -11.38617 -10.99394 -10.76377 -10.51319 -10.42730 -10.33063 -10.23698 -10.17002 -9.56234 -9.43756 -9.08598 -8.73570 -8.60286 -8.51176 -7.74756 -6.10374 -4.09279 1.60119 2.25563 2.60650 2.80149 2.96017 3.28349 3.31337 3.34297 3.36661 3.64952 4.11232 4.27532 4.38536 4.41255 4.45906 4.49227 4.67631 4.81758 4.86249 4.96784 5.08232 5.14606 5.15480 5.23756 5.26695 5.33899 5.39714 5.52134 5.62402 5.67259 5.71600 5.81009 5.90967 6.01123 6.10341 6.34640 6.38234 6.60771 6.78016 6.95419 6.98061 7.08616 7.23235 7.33111 7.59776 7.72632 7.84726 8.22974 8.45098 8.90705 8.97222 9.50074 11.02963 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022831 B = 0.001581 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.085899 B =17710.577635 C =18360.075162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.217 3.783 5 C -0.530 4.530 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.506 3.494 14 O -0.526 6.526 15 C 0.044 3.956 16 N -0.671 5.671 17 C 0.051 3.949 18 C 0.119 3.881 19 N -0.730 5.730 20 C 0.509 3.491 21 O -0.523 6.523 22 C -0.063 4.063 23 C -0.011 4.011 24 C -0.005 4.005 25 N -0.494 5.494 26 C 0.188 3.812 27 N -0.563 5.563 28 H 0.418 0.582 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.029 0.971 35 H 0.036 0.964 36 H 0.265 0.735 37 H 0.057 0.943 38 H 0.096 0.904 39 H 0.357 0.643 40 H 0.036 0.964 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.400 0.600 45 H 0.119 0.881 46 H 0.101 0.899 47 H 0.168 0.832 48 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.794 -8.092 27.107 31.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.097 3.903 5 C -0.568 4.568 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.704 3.296 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.292 3.708 14 O -0.402 6.402 15 C -0.088 4.088 16 N -0.304 5.304 17 C -0.079 4.079 18 C -0.004 4.004 19 N -0.383 5.383 20 C 0.294 3.706 21 O -0.398 6.398 22 C -0.105 4.105 23 C -0.127 4.127 24 C -0.153 4.153 25 N -0.213 5.213 26 C -0.096 4.096 27 N -0.166 5.166 28 H 0.256 0.744 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.114 0.886 39 H 0.177 0.823 40 H 0.054 0.946 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.234 0.766 45 H 0.137 0.863 46 H 0.119 0.881 47 H 0.185 0.815 48 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -13.047 -5.963 27.375 30.906 hybrid contribution -1.020 -0.894 -1.307 1.884 sum -14.068 -6.857 26.068 30.405 Atomic orbital electron populations 1.22240 0.96761 1.01529 1.02316 1.21440 0.93405 0.83919 1.03035 1.47931 1.64409 1.13335 1.06990 1.19634 0.97241 0.93429 0.80026 1.21325 0.95364 1.32962 1.07162 0.90851 1.24858 0.95002 0.95779 0.97367 1.69895 1.15148 1.44965 1.23575 0.86843 0.81421 0.81656 0.79723 1.19872 1.21079 1.19091 1.20161 0.78738 0.87082 0.84856 1.90690 1.44838 1.17757 1.86881 1.21877 1.02428 0.94317 0.90202 1.59982 1.33243 1.37545 0.99647 1.22066 1.01622 0.95126 0.89097 1.21277 1.02384 0.96141 0.80641 1.45874 1.68948 1.17612 1.05844 1.20512 0.77930 0.86885 0.85293 1.90794 1.43969 1.17629 1.87368 1.20014 1.04537 0.97347 0.88573 1.20414 0.91468 1.00770 1.00047 1.22053 0.96513 0.99813 0.96968 1.70291 1.17177 1.13793 1.20039 1.24965 0.87752 1.00468 0.96396 1.43195 1.11269 1.32940 1.29239 0.74450 0.92012 0.92964 0.92158 0.89698 0.91586 0.95286 0.94570 0.92550 0.92552 0.88592 0.82334 0.94556 0.90414 0.90221 0.91118 0.76596 0.86319 0.88098 0.81513 0.77538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 10.24 37.16 0.38 -1.60 16 2 C 0.11 1.54 5.93 -4.04 -0.02 1.52 16 3 N -0.59 -11.72 2.46 -175.06 -0.43 -12.15 16 4 C 0.22 5.24 4.23 -5.19 -0.02 5.22 16 5 C -0.53 -15.08 9.94 -34.44 -0.34 -15.42 16 6 H 0.07 2.28 8.06 -52.49 -0.42 1.86 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 9 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 13 C 0.51 9.89 7.71 -10.99 -0.08 9.81 16 14 O -0.53 -12.76 15.78 5.56 0.09 -12.67 16 15 C 0.04 0.59 4.72 -4.98 -0.02 0.57 16 16 N -0.67 -8.64 6.13 -115.05 -0.70 -9.34 16 17 C 0.05 0.43 5.80 -3.82 -0.02 0.41 16 18 C 0.12 1.09 5.93 -4.04 -0.02 1.07 16 19 N -0.73 -4.73 5.56 -60.29 -0.33 -5.06 16 20 C 0.51 4.31 7.82 -10.99 -0.09 4.22 16 21 O -0.52 -7.24 16.03 5.55 0.09 -7.15 16 22 C -0.06 -0.30 6.26 -29.03 -0.18 -0.48 16 23 C -0.01 -0.09 5.73 -81.60 -0.47 -0.56 16 24 C -0.01 -0.05 11.79 -17.81 -0.21 -0.26 16 25 N -0.49 -5.53 11.25 -14.66 -0.16 -5.69 16 26 C 0.19 1.43 13.04 -90.37 -1.18 0.25 16 27 N -0.56 -3.54 6.15 -10.30 -0.06 -3.60 16 28 H 0.42 1.26 8.96 -40.82 -0.37 0.89 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.57 7.22 -51.93 -0.37 0.20 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 33 H 0.07 0.78 6.44 -51.93 -0.33 0.44 16 34 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 35 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 37 H 0.06 0.66 7.40 -51.92 -0.38 0.28 16 38 H 0.10 1.07 7.18 -51.93 -0.37 0.69 16 39 H 0.36 5.06 8.43 -39.29 -0.33 4.73 16 40 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.40 1.20 8.47 -40.82 -0.35 0.85 16 45 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 47 H 0.17 1.45 8.06 -52.49 -0.42 1.02 16 48 H 0.21 0.74 8.06 -52.49 -0.42 0.31 16 LS Contribution 403.93 15.07 6.09 6.09 Total: -1.00 -41.00 403.93 -9.19 -50.18 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -7.47 Total: 2.58 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: -2.38 Total: 6.74 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: -0.92 Total: -62.66 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: 0.18 Total: -19.83 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -41.00 -9.19 -50.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134407006.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.175 kcal (2) G-P(sol) polarization free energy of solvation -40.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds