Wall clock time and date at job start Tue Mar 31 2020 20:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47116 * 2 1 4 4 C 1.46502 * 119.99714 * 270.00146 * 3 2 1 5 5 C 1.50698 * 109.47061 * 269.99882 * 4 3 2 6 6 H 1.07998 * 119.99838 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99904 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99874 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00254 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47112 * 90.00427 * 9 7 5 11 11 H 1.48493 * 109.47374 * 210.00602 * 9 7 5 12 12 H 1.48502 * 109.47100 * 330.00856 * 9 7 5 13 13 C 1.34774 * 120.00161 * 89.99916 * 3 2 1 14 14 O 1.21277 * 120.00186 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99755 * 359.97438 * 13 3 2 16 16 N 1.46896 * 109.47012 * 179.97438 * 15 13 3 17 17 C 1.46905 * 110.99852 * 180.02562 * 16 15 13 18 18 C 1.53006 * 109.46996 * 180.02562 * 17 16 15 19 19 N 1.46501 * 109.47157 * 180.02562 * 18 17 16 20 20 C 1.34769 * 119.99854 * 180.02562 * 19 18 17 21 21 O 1.21285 * 120.00559 * 359.97438 * 20 19 18 22 22 C 1.50699 * 120.00037 * 180.02562 * 20 19 18 23 23 C 1.50704 * 109.47511 * 179.97438 * 22 20 19 24 24 C 1.34664 * 126.58651 * 275.03761 * 23 22 20 25 25 N 1.34134 * 108.01786 * 179.74146 * 24 23 22 26 26 C 1.30496 * 109.25675 * 0.37372 * 25 24 23 27 27 N 1.35047 * 108.70161 * 359.62603 * 26 25 24 28 28 H 0.96997 * 126.40535 * 180.25138 * 27 26 25 29 29 H 1.09006 * 109.46528 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46839 * 299.99733 * 1 2 3 31 31 H 1.08996 * 109.46872 * 60.00396 * 1 2 3 32 32 H 1.09006 * 109.46858 * 240.00124 * 2 1 3 33 33 H 1.08995 * 109.47088 * 120.00109 * 2 1 3 34 34 H 1.08994 * 109.47560 * 30.00104 * 4 3 2 35 35 H 1.09001 * 109.46793 * 150.00063 * 4 3 2 36 36 H 0.97002 * 120.00107 * 179.97438 * 8 7 5 37 37 H 1.09010 * 109.47011 * 60.00370 * 15 13 3 38 38 H 1.09000 * 109.47415 * 299.99977 * 15 13 3 39 39 H 1.00898 * 111.00518 * 303.95924 * 16 15 13 40 40 H 1.08997 * 109.47379 * 60.00835 * 17 16 15 41 41 H 1.08991 * 109.47307 * 299.99851 * 17 16 15 42 42 H 1.08999 * 109.47235 * 60.00051 * 18 17 16 43 43 H 1.09002 * 109.47410 * 300.00423 * 18 17 16 44 44 H 0.96999 * 119.99913 * 359.97438 * 19 18 17 45 45 H 1.08992 * 109.47512 * 59.99585 * 22 20 19 46 46 H 1.09004 * 109.47075 * 299.99537 * 22 20 19 47 47 H 1.07998 * 125.99171 * 359.92955 * 24 23 22 48 48 H 1.08002 * 125.65353 * 179.89694 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1493 2.3904 -2.8775 8 7 5.3912 2.1833 -3.2574 9 14 3.0130 3.4359 -3.9288 10 1 3.1156 4.8560 -3.5071 11 1 3.4065 3.3135 -5.3554 12 1 1.6134 2.9693 -3.7596 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9912 1.3064 2.4723 16 7 2.3101 2.2061 3.5888 17 6 2.0767 1.5458 4.8801 18 6 2.4185 2.5121 6.0162 19 7 2.1863 1.8534 7.3040 20 6 2.4209 2.5180 8.4527 21 8 2.8247 3.6612 8.4204 22 6 2.1827 1.8403 9.7775 23 6 2.5192 2.7921 10.8964 24 6 3.7376 3.0071 11.4281 25 7 3.6119 3.9296 12.3938 26 6 2.3607 4.2885 12.4859 27 7 1.6452 3.6046 11.5671 28 1 0.6906 3.6761 11.4111 29 1 -0.3632 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.5817 1.6877 -2.0284 35 1 2.0955 3.1410 -1.1384 36 1 5.7173 2.5738 -4.0834 37 1 2.6212 0.4186 2.5302 38 1 0.9432 1.0126 2.5298 39 1 3.2586 2.5436 3.5218 40 1 2.7072 0.6598 4.9544 41 1 1.0293 1.2538 4.9548 42 1 1.7877 3.3979 5.9418 43 1 3.4659 2.8046 5.9417 44 1 1.8630 0.9393 7.3299 45 1 2.8143 0.9552 9.8516 46 1 1.1356 1.5467 9.8523 47 1 4.6555 2.5240 11.1276 48 1 1.9637 5.0155 13.1790 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134407006.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:00 Heat of formation + Delta-G solvation = -40.328831 kcal Electronic energy + Delta-G solvation = -27732.790616 eV Core-core repulsion = 23629.569366 eV Total energy + Delta-G solvation = -4103.221251 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.96330 -40.81169 -40.56560 -37.61485 -36.88860 -35.35084 -34.81214 -33.81445 -32.83894 -31.93314 -30.80839 -29.54252 -28.00775 -26.39277 -24.38060 -23.75146 -23.13792 -22.56966 -22.14071 -21.35478 -19.94430 -19.11317 -18.91734 -18.25261 -17.78821 -17.48942 -17.18251 -16.81897 -16.56420 -16.27343 -15.76343 -15.57479 -15.13000 -15.05490 -15.01214 -14.67880 -14.51026 -14.47022 -14.39350 -14.23658 -13.96896 -13.70335 -13.49296 -13.33471 -13.16967 -13.04670 -12.63612 -12.53497 -12.40960 -12.33202 -12.03662 -11.86617 -11.74659 -11.13651 -10.97025 -10.89651 -10.84175 -10.63092 -10.13507 -9.45703 -9.37817 -9.33092 -8.35211 -6.39852 1.03513 1.31052 1.35652 1.43484 1.63288 1.83933 1.99058 2.23176 2.29087 2.29895 2.45906 2.99477 3.33392 3.64764 3.70006 3.85493 3.96621 4.08521 4.12098 4.14225 4.18755 4.35475 4.39478 4.46501 4.53147 4.56335 4.63560 4.67196 4.67658 4.81255 4.89716 4.91417 4.96371 5.03480 5.04302 5.26003 5.37520 5.41975 5.47534 5.66296 5.78217 5.88018 6.20052 6.24111 6.53956 6.60558 6.61472 6.76263 7.14238 7.21589 7.28651 7.47363 8.81576 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022831 B = 0.001581 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.085899 B =17710.577635 C =18360.075162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.602 5.602 4 C 0.226 3.774 5 C -0.535 4.535 6 H 0.030 0.970 7 C 0.011 3.989 8 N -0.945 5.945 9 Si 0.946 3.054 10 H -0.279 1.279 11 H -0.274 1.274 12 H -0.238 1.238 13 C 0.492 3.508 14 O -0.587 6.587 15 C 0.061 3.939 16 N -0.694 5.694 17 C 0.061 3.939 18 C 0.125 3.875 19 N -0.710 5.710 20 C 0.507 3.493 21 O -0.586 6.586 22 C -0.053 4.053 23 C -0.008 4.008 24 C -0.045 4.045 25 N -0.544 5.544 26 C 0.187 3.813 27 N -0.554 5.554 28 H 0.434 0.566 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.047 0.953 35 H 0.014 0.986 36 H 0.268 0.732 37 H 0.081 0.919 38 H 0.131 0.869 39 H 0.343 0.657 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.055 0.945 43 H 0.047 0.953 44 H 0.422 0.578 45 H 0.149 0.851 46 H 0.141 0.859 47 H 0.165 0.835 48 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.551 -10.474 28.102 34.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.333 5.333 4 C 0.104 3.896 5 C -0.574 4.574 6 H 0.048 0.952 7 C -0.187 4.187 8 N -0.585 5.585 9 Si 0.769 3.231 10 H -0.205 1.205 11 H -0.199 1.199 12 H -0.161 1.161 13 C 0.281 3.719 14 O -0.467 6.467 15 C -0.071 4.071 16 N -0.326 5.326 17 C -0.068 4.068 18 C 0.000 4.000 19 N -0.364 5.364 20 C 0.294 3.706 21 O -0.465 6.465 22 C -0.093 4.093 23 C -0.125 4.125 24 C -0.193 4.193 25 N -0.264 5.264 26 C -0.098 4.098 27 N -0.158 5.158 28 H 0.275 0.725 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.065 0.935 35 H 0.032 0.968 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.148 0.852 39 H 0.161 0.839 40 H 0.078 0.922 41 H 0.121 0.879 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.260 0.740 45 H 0.166 0.834 46 H 0.159 0.841 47 H 0.183 0.817 48 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -16.885 -8.467 28.387 34.098 hybrid contribution 0.213 -0.195 -1.547 1.573 sum -16.672 -8.662 26.841 32.763 Atomic orbital electron populations 1.22164 0.93948 1.03657 1.02092 1.21797 0.95631 0.80965 1.04047 1.48066 1.64341 1.15258 1.05680 1.19246 0.94669 0.92914 0.82816 1.21585 0.97145 1.32015 1.06657 0.95181 1.25838 0.96681 0.97184 0.99011 1.70045 1.17376 1.46586 1.24490 0.85738 0.80543 0.78952 0.77855 1.20471 1.19923 1.16119 1.21371 0.77127 0.86704 0.86713 1.90654 1.47463 1.20660 1.87919 1.21820 1.04829 0.93844 0.86573 1.59985 1.32535 1.38746 1.01380 1.22080 1.03537 0.94901 0.86285 1.21025 1.00449 0.96078 0.82402 1.45656 1.67969 1.18371 1.04413 1.21196 0.76496 0.86164 0.86746 1.90781 1.46915 1.20544 1.88253 1.20136 1.07610 0.96800 0.84786 1.20793 0.90958 1.00690 1.00093 1.22284 0.97795 1.00998 0.98203 1.70215 1.19409 1.15249 1.21534 1.25621 0.87096 1.00398 0.96653 1.43206 1.12050 1.32081 1.28505 0.72494 0.88632 0.91735 0.93867 0.91192 0.88198 0.93500 0.96787 0.92307 0.90106 0.85163 0.83861 0.92230 0.87866 0.92669 0.93488 0.73988 0.83379 0.84106 0.81719 0.74280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 10.24 71.98 0.74 -2.38 16 2 C 0.10 2.58 5.93 86.38 0.51 3.09 16 3 N -0.60 -23.32 2.46 -826.16 -2.03 -25.34 16 4 C 0.23 10.97 4.23 85.63 0.36 11.33 16 5 C -0.54 -31.49 9.94 25.60 0.25 -31.24 16 6 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 7 C 0.01 0.65 5.47 84.65 0.46 1.11 16 8 N -0.94 -59.95 13.96 21.45 0.30 -59.65 16 9 Si 0.95 44.87 27.47 68.60 1.88 46.76 16 10 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 12 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 13 C 0.49 19.03 7.71 87.66 0.68 19.71 16 14 O -0.59 -29.42 15.78 -3.02 -0.05 -29.46 16 15 C 0.06 1.45 4.72 85.56 0.40 1.86 16 16 N -0.69 -16.83 6.13 -517.92 -3.17 -20.00 16 17 C 0.06 0.84 5.80 86.30 0.50 1.34 16 18 C 0.13 2.18 5.93 86.38 0.51 2.69 16 19 N -0.71 -7.43 5.56 -463.05 -2.57 -10.01 16 20 C 0.51 7.78 7.82 87.66 0.69 8.47 16 21 O -0.59 -16.50 16.03 -3.04 -0.05 -16.54 16 22 C -0.05 -0.34 6.26 29.10 0.18 -0.15 16 23 C -0.01 -0.12 5.73 40.95 0.23 0.11 16 24 C -0.05 -0.94 11.79 83.52 0.98 0.05 16 25 N -0.54 -12.50 11.25 -200.31 -2.25 -14.75 16 26 C 0.19 2.70 13.04 180.26 2.35 5.05 16 27 N -0.55 -6.10 6.15 -186.49 -1.15 -7.25 16 28 H 0.43 1.59 8.96 -92.71 -0.83 0.76 16 29 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.06 1.11 7.22 -2.39 -0.02 1.09 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 2.06 8.07 -2.38 -0.02 2.04 16 33 H 0.10 1.95 6.44 -2.39 -0.02 1.93 16 34 H 0.05 2.10 7.13 -2.39 -0.02 2.08 16 35 H 0.01 0.74 6.85 -2.39 -0.02 0.73 16 36 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 37 H 0.08 1.56 7.40 -2.38 -0.02 1.55 16 38 H 0.13 2.23 7.18 -2.39 -0.02 2.22 16 39 H 0.34 9.86 8.43 -89.70 -0.76 9.10 16 40 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.42 0.72 8.47 -92.71 -0.79 -0.06 16 45 H 0.15 0.13 8.14 -2.39 -0.02 0.11 16 46 H 0.14 -0.18 8.14 -2.38 -0.02 -0.20 16 47 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 48 H 0.24 1.35 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -98.77 403.93 -1.65 -100.43 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -1.42 Total: 14.79 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: 8.86 Total: 21.04 kcal Atomic # 7 Polarization: -126.13 SS G_CDS: -10.88 Total: -137.00 kcal Atomic # 8 Polarization: -45.91 SS G_CDS: -0.10 Total: -46.01 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.76 kcal Total: -98.77 -1.65 -100.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134407006.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.098 kcal (2) G-P(sol) polarization free energy of solvation -98.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds