Wall clock time and date at job start Tue Mar 31 2020 20:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47606 * 2 1 4 4 C 1.46502 * 119.99795 * 270.00042 * 3 2 1 5 5 C 1.50696 * 109.46955 * 269.99479 * 4 3 2 6 6 H 1.08000 * 120.00033 * 0.02562 * 5 4 3 7 7 C 1.37885 * 120.00079 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99547 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00218 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47444 * 59.99467 * 9 7 5 11 11 H 1.48502 * 109.47544 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46791 * 299.99990 * 9 7 5 13 13 C 1.34777 * 120.00549 * 89.99582 * 3 2 1 14 14 O 1.21281 * 120.00532 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99613 * 359.97438 * 13 3 2 16 16 N 1.46898 * 109.47407 * 179.97438 * 15 13 3 17 17 C 1.46901 * 111.00180 * 180.02562 * 16 15 13 18 18 C 1.53001 * 109.46686 * 180.02562 * 17 16 15 19 19 N 1.46500 * 109.46550 * 180.02562 * 18 17 16 20 20 C 1.34783 * 119.99869 * 179.97438 * 19 18 17 21 21 O 1.21606 * 120.00062 * 0.02562 * 20 19 18 22 22 C 1.47411 * 119.99966 * 179.97438 * 20 19 18 23 23 N 1.31607 * 125.86315 * 359.97438 * 22 20 19 24 24 C 1.33104 * 109.09291 * 180.02562 * 23 22 20 25 25 C 1.50700 * 125.82256 * 180.26319 * 24 23 22 26 26 C 1.35565 * 108.34964 * 359.97438 * 24 23 22 27 27 N 1.35402 * 107.15899 * 0.02562 * 26 24 23 28 28 H 0.97004 * 126.43424 * 180.02562 * 27 26 24 29 29 H 1.08992 * 109.47375 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47168 * 300.00637 * 1 2 3 31 31 H 1.09003 * 109.46411 * 60.00260 * 1 2 3 32 32 H 1.09001 * 109.47168 * 239.99363 * 2 1 3 33 33 H 1.09007 * 109.46852 * 119.99898 * 2 1 3 34 34 H 1.09003 * 109.47511 * 29.99689 * 4 3 2 35 35 H 1.09005 * 109.46928 * 149.99615 * 4 3 2 36 36 H 0.97001 * 119.99572 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.47052 * 60.00200 * 15 13 3 38 38 H 1.08994 * 109.47542 * 300.00472 * 15 13 3 39 39 H 1.00899 * 110.99848 * 303.95866 * 16 15 13 40 40 H 1.09004 * 109.46487 * 60.00693 * 17 16 15 41 41 H 1.08993 * 109.47288 * 300.00331 * 17 16 15 42 42 H 1.08996 * 109.47399 * 60.00685 * 18 17 16 43 43 H 1.09002 * 109.47221 * 299.99816 * 18 17 16 44 44 H 0.97000 * 120.00660 * 0.02562 * 19 18 17 45 45 H 1.08996 * 109.47165 * 269.68516 * 25 24 23 46 46 H 1.08996 * 109.47622 * 29.69264 * 25 24 23 47 47 H 1.09002 * 109.47052 * 149.69282 * 25 24 23 48 48 H 1.08001 * 126.41501 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.2627 2.0717 -1.2688 5 6 3.6859 1.8348 -1.7037 6 1 4.3427 1.2300 -1.0961 7 6 4.1496 2.3902 -2.8775 8 7 3.3496 3.1263 -3.6176 9 14 5.9136 2.0961 -3.4170 10 1 6.1404 0.6394 -3.5952 11 1 6.1616 2.7972 -4.7024 12 1 6.8415 2.6184 -2.3817 13 6 2.2431 2.0166 1.1671 14 8 2.6470 3.1601 1.1671 15 6 1.9912 1.3064 2.4723 16 7 2.3101 2.2062 3.5888 17 6 2.0766 1.5460 4.8802 18 6 2.4184 2.5123 6.0161 19 7 2.1861 1.8537 7.3039 20 6 2.4217 2.5179 8.4528 21 8 2.8267 3.6641 8.4203 22 6 2.1875 1.8554 9.7486 23 7 1.7513 0.6253 9.9179 24 6 1.6612 0.3709 11.2213 25 6 1.2069 -0.9273 11.8372 26 6 2.0539 1.4766 11.9001 27 7 2.3857 2.4132 10.9803 28 1 2.7048 3.3112 11.1617 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 1.5819 1.6876 -2.0285 35 1 2.0957 3.1410 -1.1384 36 1 3.6759 3.5173 -4.4432 37 1 2.6211 0.4187 2.5303 38 1 0.9432 1.0127 2.5298 39 1 3.2587 2.5435 3.5218 40 1 2.7071 0.6599 4.9544 41 1 1.0292 1.2540 4.9548 42 1 1.7877 3.3981 5.9417 43 1 3.4658 2.8047 5.9416 44 1 1.8634 0.9393 7.3299 45 1 0.1280 -0.8991 11.9899 46 1 1.4581 -1.7530 11.1714 47 1 1.7059 -1.0689 12.7959 48 1 2.0937 1.5895 12.9735 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135052554.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:50 Heat of formation + Delta-G solvation = -13.784422 kcal Electronic energy + Delta-G solvation = -27784.033136 eV Core-core repulsion = 23681.962937 eV Total energy + Delta-G solvation = -4102.070199 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.73193 -39.72695 -39.11065 -36.61676 -35.27318 -34.54396 -33.65288 -32.77790 -31.84585 -30.12434 -29.74203 -27.81369 -27.13092 -25.41262 -23.79496 -23.00073 -22.33657 -22.09314 -20.93421 -20.73196 -19.12044 -18.36760 -16.96419 -16.54407 -16.46456 -16.37705 -16.25173 -15.97219 -15.49594 -15.08132 -14.59611 -14.56005 -14.31705 -14.11264 -13.64579 -13.53661 -13.41077 -13.31262 -13.25114 -13.14274 -12.70078 -12.41476 -12.21921 -11.96891 -11.76959 -11.62123 -11.43332 -11.15754 -10.91146 -10.79657 -10.72381 -10.69397 -10.60776 -10.50847 -10.11694 -9.63525 -9.49679 -8.93085 -8.89632 -8.41746 -8.41051 -7.63605 -6.02620 -4.07471 0.90784 2.07860 2.10475 2.98646 3.01921 3.32286 3.37120 3.38592 3.46679 3.68973 3.87085 4.35856 4.43939 4.48473 4.55695 4.69148 4.72586 4.88179 5.09751 5.23808 5.25369 5.25924 5.27009 5.31775 5.42983 5.46053 5.50116 5.50790 5.65459 5.67284 5.73407 5.81900 5.97405 6.03686 6.10545 6.24199 6.49177 6.63116 6.76422 6.97440 7.12614 7.31646 7.36321 7.48185 7.57596 7.73281 7.93899 8.25516 8.45442 8.91961 9.13353 9.57503 11.05305 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019676 B = 0.001666 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.710091 B =16804.733713 C =17459.426232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.504 3.496 14 O -0.528 6.528 15 C 0.043 3.957 16 N -0.669 5.669 17 C 0.050 3.950 18 C 0.120 3.880 19 N -0.701 5.701 20 C 0.607 3.393 21 O -0.538 6.538 22 C 0.148 3.852 23 N -0.441 5.441 24 C -0.001 4.001 25 C -0.069 4.069 26 C -0.023 4.023 27 N -0.523 5.523 28 H 0.431 0.569 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.264 0.736 37 H 0.055 0.945 38 H 0.096 0.904 39 H 0.355 0.645 40 H 0.038 0.962 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.412 0.588 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.150 -9.975 30.410 32.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.566 4.566 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.289 3.711 14 O -0.404 6.404 15 C -0.090 4.090 16 N -0.302 5.302 17 C -0.080 4.080 18 C -0.003 4.003 19 N -0.353 5.353 20 C 0.390 3.610 21 O -0.413 6.413 22 C -0.113 4.113 23 N -0.165 5.165 24 C -0.135 4.135 25 C -0.127 4.127 26 C -0.162 4.162 27 N -0.125 5.125 28 H 0.271 0.729 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.114 0.886 39 H 0.175 0.825 40 H 0.056 0.944 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.248 0.752 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -6.441 -8.625 29.441 31.347 hybrid contribution 1.874 -0.313 0.448 1.952 sum -4.568 -8.938 29.889 31.529 Atomic orbital electron populations 1.22227 0.96786 1.01354 1.02419 1.21409 0.93529 0.84292 1.02559 1.48247 1.64007 1.13198 1.07693 1.19250 0.96140 0.93697 0.78086 1.21398 0.96977 1.31945 1.06290 0.92614 1.24937 0.97806 0.94944 0.96412 1.69926 1.35678 1.33323 1.14357 0.86566 0.84856 0.78177 0.77836 1.20315 1.21179 1.20217 1.20138 0.79001 0.87092 0.84857 1.90685 1.45102 1.17676 1.86903 1.21905 1.02461 0.94233 0.90357 1.59969 1.33047 1.37640 0.99590 1.22068 1.02014 0.95028 0.88919 1.21378 1.02602 0.96354 0.79988 1.45511 1.66755 1.18147 1.04904 1.16395 0.78079 0.84863 0.81659 1.90882 1.46537 1.16840 1.87085 1.22589 1.09891 0.91327 0.87491 1.70094 1.15584 1.11749 1.19039 1.20935 1.06283 0.97334 0.88947 1.20076 1.01146 0.91662 0.99780 1.22773 1.06975 0.90177 0.96325 1.42891 1.48047 1.15516 1.06018 0.72893 0.92228 0.93011 0.92002 0.89977 0.91929 0.95054 0.93862 0.92680 0.92741 0.88588 0.82504 0.94422 0.90090 0.89624 0.90780 0.75155 0.91071 0.90805 0.91037 0.79588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 37.16 0.38 -1.83 16 2 C 0.11 1.65 5.93 -4.04 -0.02 1.63 16 3 N -0.60 -12.43 2.46 -175.06 -0.43 -12.86 16 4 C 0.25 6.46 5.16 -5.19 -0.03 6.43 16 5 C -0.53 -14.94 9.39 -34.44 -0.32 -15.26 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 9 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.50 10.30 7.71 -10.98 -0.08 10.21 16 14 O -0.53 -13.28 15.78 5.56 0.09 -13.19 16 15 C 0.04 0.61 4.72 -4.98 -0.02 0.59 16 16 N -0.67 -9.13 6.13 -115.06 -0.70 -9.83 16 17 C 0.05 0.48 5.80 -3.82 -0.02 0.46 16 18 C 0.12 1.23 5.93 -4.04 -0.02 1.20 16 19 N -0.70 -6.64 5.55 -61.39 -0.34 -6.98 16 20 C 0.61 6.81 7.81 -12.52 -0.10 6.72 16 21 O -0.54 -7.52 17.09 5.27 0.09 -7.43 16 22 C 0.15 1.46 7.95 -154.53 -1.23 0.23 16 23 N -0.44 -4.31 10.89 -7.50 -0.08 -4.39 16 24 C 0.00 -0.01 7.07 -83.00 -0.59 -0.59 16 25 C -0.07 -0.32 10.42 36.01 0.38 0.06 16 26 C -0.02 -0.13 11.91 -16.93 -0.20 -0.33 16 27 N -0.52 -3.72 6.14 -10.78 -0.07 -3.78 16 28 H 0.43 2.21 8.96 -40.82 -0.37 1.85 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.64 7.22 -51.93 -0.37 0.27 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 33 H 0.06 0.79 6.44 -51.92 -0.33 0.46 16 34 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 35 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.05 0.68 7.40 -51.93 -0.38 0.30 16 38 H 0.10 1.19 7.18 -51.93 -0.37 0.81 16 39 H 0.36 5.16 8.43 -39.29 -0.33 4.83 16 40 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.41 3.25 8.15 -40.82 -0.33 2.92 16 45 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 48 H 0.19 0.31 8.06 -52.49 -0.42 -0.11 16 LS Contribution 408.52 15.07 6.16 6.16 Total: -1.00 -36.96 408.52 -9.05 -46.01 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -7.49 Total: 4.17 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: -1.99 Total: 11.17 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: -0.89 Total: -63.78 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: 0.18 Total: -20.62 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.96 -9.05 -46.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135052554.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.224 kcal (2) G-P(sol) polarization free energy of solvation -36.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds