Wall clock time and date at job start Tue Mar 31 2020 21:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28594 * 124.61580 * 2 1 4 4 C 1.31382 * 108.71570 * 179.97438 * 3 2 1 5 5 C 1.39669 * 105.89945 * 359.97438 * 4 3 2 6 6 C 1.50707 * 127.04986 * 179.97438 * 5 4 3 7 7 C 1.53008 * 109.46889 * 125.00310 * 6 5 4 8 8 C 1.50695 * 109.46954 * 180.02562 * 7 6 5 9 9 O 1.21289 * 120.00255 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00188 * 179.72259 * 8 7 6 11 11 C 1.46503 * 120.00511 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47645 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.47073 * 305.00793 * 12 11 10 14 14 C 1.54799 * 109.47370 * 185.01327 * 12 11 10 15 15 N 1.45118 * 109.53984 * 172.10755 * 14 12 11 16 16 C 1.36931 * 118.76375 * 269.28787 * 15 14 12 17 17 H 1.08004 * 119.99604 * 26.09236 * 16 15 14 18 18 C 1.38808 * 120.00660 * 206.09982 * 16 15 14 19 19 N 1.31619 * 119.99895 * 15.46423 * 18 16 15 20 20 Si 1.86801 * 120.00129 * 195.46936 * 18 16 15 21 21 H 1.48495 * 109.47450 * 89.99625 * 20 18 16 22 22 H 1.48502 * 109.47027 * 209.99510 * 20 18 16 23 23 H 1.48496 * 109.46909 * 329.99365 * 20 18 16 24 24 C 1.47510 * 122.48229 * 89.28940 * 15 14 12 25 25 C 1.53570 * 111.02888 * 318.37354 * 24 15 14 26 26 C 1.51530 * 109.58124 * 320.02112 * 25 24 15 27 27 O 1.38012 * 109.46897 * 65.00165 * 12 11 10 28 28 N 1.28598 * 124.61789 * 180.25406 * 2 1 3 29 29 H 1.09000 * 109.47221 * 90.01896 * 1 2 3 30 30 H 1.08997 * 109.46938 * 210.02167 * 1 2 3 31 31 H 1.09002 * 109.47235 * 330.01958 * 1 2 3 32 32 H 1.08006 * 127.04881 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.46996 * 5.00556 * 6 5 4 34 34 H 1.08993 * 109.47405 * 244.99938 * 6 5 4 35 35 H 1.08993 * 109.47264 * 59.99953 * 7 6 5 36 36 H 1.09002 * 109.46659 * 299.99813 * 7 6 5 37 37 H 0.97006 * 119.99897 * 0.02562 * 10 8 7 38 38 H 1.09004 * 109.47218 * 300.00498 * 11 10 8 39 39 H 1.09010 * 109.46603 * 60.00027 * 11 10 8 40 40 H 1.08998 * 109.45890 * 292.13177 * 14 12 11 41 41 H 1.09000 * 109.45890 * 52.09003 * 14 12 11 42 42 H 0.97000 * 120.00289 * 180.02562 * 19 18 16 43 43 H 1.09007 * 109.16757 * 197.97423 * 24 15 14 44 44 H 1.09002 * 109.12765 * 78.74364 * 24 15 14 45 45 H 1.09001 * 109.45249 * 199.98923 * 25 24 15 46 46 H 1.08997 * 109.45413 * 80.05417 * 25 24 15 47 47 H 1.09007 * 109.58838 * 331.61792 * 26 25 24 48 48 H 1.08999 * 109.59098 * 211.18430 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4591 0.6984 0.0006 5 6 3.4591 -0.6983 0.0015 6 6 4.6619 -1.6064 0.0019 7 6 4.5706 -2.5732 1.1842 8 6 5.7736 -3.4808 1.1850 9 8 6.6204 -3.3660 0.3243 10 7 5.9111 -4.4167 2.1449 11 6 7.0803 -5.2995 2.1454 12 6 6.9922 -6.2621 3.3313 13 1 6.8770 -5.6927 4.2536 14 6 8.2860 -7.1087 3.4059 15 7 8.2870 -7.8866 4.6310 16 6 8.8559 -7.3471 5.7536 17 1 8.9087 -6.2747 5.8700 18 6 9.3648 -8.1784 6.7419 19 7 9.5824 -9.4506 6.4841 20 14 9.7406 -7.4915 8.4380 21 1 8.5380 -7.6159 9.3001 22 1 10.8637 -8.2522 9.0423 23 1 10.1191 -6.0605 8.3197 24 6 7.6984 -9.2367 4.7125 25 6 6.3668 -9.3043 3.9506 26 6 5.5808 -8.0307 4.1879 27 8 5.9051 -7.0963 3.1669 28 7 2.1956 -1.0583 -0.0047 29 1 -0.3634 -0.0003 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5135 32 1 4.3211 1.3491 0.0011 33 1 5.5687 -1.0081 0.0910 34 1 4.6900 -2.1725 -0.9290 35 1 3.6638 -3.1714 1.0952 36 1 4.5424 -2.0070 2.1152 37 1 5.2354 -4.5064 2.8352 38 1 7.1058 -5.8692 1.2165 39 1 7.9874 -4.7008 2.2294 40 1 8.3301 -7.7808 2.5489 41 1 9.1532 -6.4485 3.3943 42 1 9.9376 -10.0316 7.1749 43 1 7.5254 -9.4891 5.7588 44 1 8.3943 -9.9564 4.2813 45 1 5.7892 -10.1585 4.3041 46 1 6.5638 -9.4159 2.8844 47 1 5.8436 -7.6149 5.1607 48 1 4.5133 -8.2491 4.1578 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150324609.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:19 Heat of formation + Delta-G solvation = 47.592604 kcal Electronic energy + Delta-G solvation = -28831.469520 eV Core-core repulsion = 24732.060829 eV Total energy + Delta-G solvation = -4099.408691 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.83156 -39.74651 -38.78064 -35.38798 -35.09611 -34.54762 -33.22719 -32.24607 -31.78586 -31.47462 -28.87407 -27.84839 -25.85017 -25.41827 -24.46823 -22.69097 -22.55944 -20.99043 -20.83659 -20.03151 -19.52301 -17.70561 -17.23267 -17.02318 -16.85097 -16.22124 -15.93475 -15.57333 -15.20063 -15.04034 -14.82193 -14.37679 -13.98189 -13.85582 -13.71196 -13.51032 -13.31409 -13.04483 -12.98217 -12.63655 -12.33282 -12.22502 -12.09234 -11.82158 -11.40018 -11.21887 -11.19607 -11.05918 -10.98705 -10.87638 -10.66381 -10.51298 -10.24720 -9.90510 -9.81575 -9.76868 -9.70059 -9.38867 -8.89745 -8.82410 -8.45311 -6.77743 -5.85969 -3.30992 1.50943 2.01703 2.12973 2.73990 3.29675 3.32597 3.39674 3.40533 3.77945 4.16255 4.41810 4.45251 4.57346 4.60104 4.74728 4.83911 4.93649 5.05180 5.15091 5.20148 5.34077 5.42694 5.54505 5.56505 5.62300 5.70120 5.78902 5.86955 5.88857 5.99438 6.01584 6.04762 6.16402 6.26439 6.34219 6.38082 6.51783 6.62201 6.69300 6.73620 6.81631 7.33564 7.60911 7.63740 7.74684 8.03478 8.20272 8.32691 8.37255 9.15006 9.79795 10.25934 11.21480 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018635 B = 0.001941 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.178401 B =14422.278470 C =14693.044294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.162 5.162 3 N -0.293 5.293 4 C -0.022 4.022 5 C 0.006 3.994 6 C -0.013 4.013 7 C -0.134 4.134 8 C 0.511 3.489 9 O -0.548 6.548 10 N -0.720 5.720 11 C 0.132 3.868 12 C 0.066 3.934 13 H 0.051 0.949 14 C 0.128 3.872 15 N -0.592 5.592 16 C -0.265 4.265 17 H 0.067 0.933 18 C 0.006 3.994 19 N -0.902 5.902 20 Si 0.903 3.097 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.177 3.823 25 C -0.177 4.177 26 C 0.088 3.912 27 O -0.396 6.396 28 N -0.286 5.286 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.198 0.802 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.403 0.597 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.043 0.957 41 H 0.056 0.944 42 H 0.254 0.746 43 H 0.075 0.925 44 H 0.027 0.973 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.061 0.939 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.905 15.173 -10.704 25.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.063 5.063 3 N -0.134 5.134 4 C -0.204 4.204 5 C -0.156 4.156 6 C -0.052 4.052 7 C -0.175 4.175 8 C 0.297 3.703 9 O -0.426 6.426 10 N -0.371 5.371 11 C 0.008 3.992 12 C 0.004 3.996 13 H 0.069 0.931 14 C -0.002 4.002 15 N -0.313 5.313 16 C -0.395 4.395 17 H 0.084 0.916 18 C -0.193 4.193 19 N -0.546 5.546 20 Si 0.732 3.268 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.052 3.948 25 C -0.216 4.216 26 C 0.012 3.988 27 O -0.315 6.315 28 N -0.129 5.129 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.215 0.785 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.237 0.763 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.094 0.906 44 H 0.045 0.955 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.719 15.096 -11.363 25.903 hybrid contribution 0.910 0.125 1.620 1.862 sum -16.809 15.221 -9.743 24.681 Atomic orbital electron populations 1.22109 0.70321 1.05833 1.04879 1.47910 1.08855 0.99390 1.50101 1.74041 1.04045 1.16153 1.19157 1.24705 0.94436 0.94768 1.06484 1.23257 0.92616 0.94239 1.05524 1.19630 0.91633 0.94838 0.99136 1.21599 0.97672 0.97732 1.00511 1.20567 0.87561 0.80892 0.81243 1.90701 1.43609 1.70862 1.37467 1.46014 1.25791 1.35189 1.30082 1.21423 0.88000 0.90663 0.99110 1.22625 0.90370 0.90849 0.95707 0.93100 1.21412 0.94426 0.94298 0.90035 1.43832 1.65659 1.15521 1.06256 1.19224 1.32897 0.91439 0.95902 0.91565 1.25053 0.98479 0.96125 0.99630 1.70070 1.47257 1.04710 1.32554 0.86289 0.77593 0.78376 0.84499 1.21430 1.21690 1.20387 1.20998 0.88754 0.85535 0.99511 1.22770 0.99881 0.97509 1.01425 1.22008 0.96837 0.88605 0.91334 1.86075 1.47957 1.50906 1.46547 1.74011 1.03662 1.15558 1.19628 0.89356 0.87894 0.88005 0.78505 0.88693 0.89168 0.88387 0.88938 0.76325 0.91010 0.90229 0.93818 0.92611 0.93554 0.90648 0.95470 0.92131 0.92377 0.92082 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.47 11.57 59.85 0.69 1.16 16 2 N -0.16 -1.51 4.35 -16.63 -0.07 -1.58 16 3 N -0.29 -2.98 12.05 30.67 0.37 -2.61 16 4 C -0.02 -0.20 12.15 -17.21 -0.21 -0.41 16 5 C 0.01 0.06 6.61 -82.25 -0.54 -0.48 16 6 C -0.01 -0.12 5.10 -27.88 -0.14 -0.26 16 7 C -0.13 -1.27 5.68 -27.88 -0.16 -1.43 16 8 C 0.51 6.56 7.83 -10.99 -0.09 6.47 16 9 O -0.55 -8.90 15.98 5.55 0.09 -8.81 16 10 N -0.72 -9.26 5.49 -60.29 -0.33 -9.59 16 11 C 0.13 1.98 5.34 -4.04 -0.02 1.95 16 12 C 0.07 1.14 2.68 -25.79 -0.07 1.07 16 13 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 14 C 0.13 2.58 5.12 -3.84 -0.02 2.57 16 15 N -0.59 -14.12 2.23 -172.03 -0.38 -14.50 16 16 C -0.27 -6.95 9.46 -15.06 -0.14 -7.09 16 17 H 0.07 1.71 7.88 -52.48 -0.41 1.30 16 18 C 0.01 0.16 4.89 -17.43 -0.09 0.08 16 19 N -0.90 -25.45 11.00 55.49 0.61 -24.84 16 20 Si 0.90 21.13 29.58 -169.99 -5.03 16.10 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 24 C 0.18 4.10 4.70 -3.19 -0.02 4.08 16 25 C -0.18 -3.27 5.78 -27.18 -0.16 -3.43 16 26 C 0.09 1.53 6.37 36.41 0.23 1.76 16 27 O -0.40 -6.85 9.38 -26.53 -0.25 -7.10 16 28 N -0.29 -3.04 12.05 33.71 0.41 -2.64 16 29 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.20 1.17 8.06 -52.48 -0.42 0.74 16 33 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 34 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.40 4.52 8.46 -40.82 -0.35 4.18 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.08 1.20 8.14 -51.92 -0.42 0.77 16 40 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 41 H 0.06 1.13 7.98 -51.93 -0.41 0.72 16 42 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.08 1.93 6.37 -51.93 -0.33 1.60 16 44 H 0.03 0.69 8.04 -51.93 -0.42 0.27 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.06 1.08 8.01 -51.93 -0.42 0.66 16 47 H 0.06 1.18 7.40 -51.92 -0.38 0.79 16 48 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 392.94 15.07 5.92 5.92 Total: -1.00 -33.48 392.94 -7.16 -40.64 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -7.77 Total: 2.94 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -0.72 Total: 6.05 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.60 Total: -55.75 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.16 Total: -15.91 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.48 -7.16 -40.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150324609.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.237 kcal (2) G-P(sol) polarization free energy of solvation -33.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds