Wall clock time and date at job start Tue Mar 31 2020 21:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28594 * 124.61580 * 2 1 4 4 C 1.31382 * 108.71570 * 179.97438 * 3 2 1 5 5 C 1.39669 * 105.89945 * 359.97438 * 4 3 2 6 6 C 1.50707 * 127.04986 * 179.97438 * 5 4 3 7 7 C 1.53008 * 109.46889 * 125.00310 * 6 5 4 8 8 C 1.50695 * 109.46954 * 180.02562 * 7 6 5 9 9 O 1.21289 * 120.00255 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00188 * 179.72259 * 8 7 6 11 11 C 1.46503 * 120.00511 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47645 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.47073 * 305.00793 * 12 11 10 14 14 C 1.54799 * 109.47370 * 185.01327 * 12 11 10 15 15 N 1.45118 * 109.53984 * 172.10755 * 14 12 11 16 16 C 1.36931 * 118.76375 * 269.28787 * 15 14 12 17 17 H 1.08004 * 119.99604 * 26.09236 * 16 15 14 18 18 C 1.38808 * 120.00660 * 206.09982 * 16 15 14 19 19 N 1.31619 * 119.99895 * 15.46423 * 18 16 15 20 20 Si 1.86801 * 120.00129 * 195.46936 * 18 16 15 21 21 H 1.48495 * 109.47450 * 89.99625 * 20 18 16 22 22 H 1.48502 * 109.47027 * 209.99510 * 20 18 16 23 23 H 1.48496 * 109.46909 * 329.99365 * 20 18 16 24 24 C 1.47510 * 122.48229 * 89.28940 * 15 14 12 25 25 C 1.53570 * 111.02888 * 318.37354 * 24 15 14 26 26 C 1.51530 * 109.58124 * 320.02112 * 25 24 15 27 27 O 1.38012 * 109.46897 * 65.00165 * 12 11 10 28 28 N 1.28598 * 124.61789 * 180.25406 * 2 1 3 29 29 H 1.09000 * 109.47221 * 90.01896 * 1 2 3 30 30 H 1.08997 * 109.46938 * 210.02167 * 1 2 3 31 31 H 1.09002 * 109.47235 * 330.01958 * 1 2 3 32 32 H 1.08006 * 127.04881 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.46996 * 5.00556 * 6 5 4 34 34 H 1.08993 * 109.47405 * 244.99938 * 6 5 4 35 35 H 1.08993 * 109.47264 * 59.99953 * 7 6 5 36 36 H 1.09002 * 109.46659 * 299.99813 * 7 6 5 37 37 H 0.97006 * 119.99897 * 0.02562 * 10 8 7 38 38 H 1.09004 * 109.47218 * 300.00498 * 11 10 8 39 39 H 1.09010 * 109.46603 * 60.00027 * 11 10 8 40 40 H 1.08998 * 109.45890 * 292.13177 * 14 12 11 41 41 H 1.09000 * 109.45890 * 52.09003 * 14 12 11 42 42 H 0.97000 * 120.00289 * 180.02562 * 19 18 16 43 43 H 1.09007 * 109.16757 * 197.97423 * 24 15 14 44 44 H 1.09002 * 109.12765 * 78.74364 * 24 15 14 45 45 H 1.09001 * 109.45249 * 199.98923 * 25 24 15 46 46 H 1.08997 * 109.45413 * 80.05417 * 25 24 15 47 47 H 1.09007 * 109.58838 * 331.61792 * 26 25 24 48 48 H 1.08999 * 109.59098 * 211.18430 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4591 0.6984 0.0006 5 6 3.4591 -0.6983 0.0015 6 6 4.6619 -1.6064 0.0019 7 6 4.5706 -2.5732 1.1842 8 6 5.7736 -3.4808 1.1850 9 8 6.6204 -3.3660 0.3243 10 7 5.9111 -4.4167 2.1449 11 6 7.0803 -5.2995 2.1454 12 6 6.9922 -6.2621 3.3313 13 1 6.8770 -5.6927 4.2536 14 6 8.2860 -7.1087 3.4059 15 7 8.2870 -7.8866 4.6310 16 6 8.8559 -7.3471 5.7536 17 1 8.9087 -6.2747 5.8700 18 6 9.3648 -8.1784 6.7419 19 7 9.5824 -9.4506 6.4841 20 14 9.7406 -7.4915 8.4380 21 1 8.5380 -7.6159 9.3001 22 1 10.8637 -8.2522 9.0423 23 1 10.1191 -6.0605 8.3197 24 6 7.6984 -9.2367 4.7125 25 6 6.3668 -9.3043 3.9506 26 6 5.5808 -8.0307 4.1879 27 8 5.9051 -7.0963 3.1669 28 7 2.1956 -1.0583 -0.0047 29 1 -0.3634 -0.0003 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5135 32 1 4.3211 1.3491 0.0011 33 1 5.5687 -1.0081 0.0910 34 1 4.6900 -2.1725 -0.9290 35 1 3.6638 -3.1714 1.0952 36 1 4.5424 -2.0070 2.1152 37 1 5.2354 -4.5064 2.8352 38 1 7.1058 -5.8692 1.2165 39 1 7.9874 -4.7008 2.2294 40 1 8.3301 -7.7808 2.5489 41 1 9.1532 -6.4485 3.3943 42 1 9.9376 -10.0316 7.1749 43 1 7.5254 -9.4891 5.7588 44 1 8.3943 -9.9564 4.2813 45 1 5.7892 -10.1585 4.3041 46 1 6.5638 -9.4159 2.8844 47 1 5.8436 -7.6149 5.1607 48 1 4.5133 -8.2491 4.1578 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150324609.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:18 Heat of formation + Delta-G solvation = 24.199876 kcal Electronic energy + Delta-G solvation = -28832.483905 eV Core-core repulsion = 24732.060829 eV Total energy + Delta-G solvation = -4100.423076 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.49362 -40.93846 -40.16301 -37.00421 -36.05890 -35.66187 -33.89093 -33.62378 -33.40549 -32.56485 -30.23906 -28.64553 -27.29291 -27.04200 -25.59382 -24.08588 -23.26114 -22.27446 -21.82086 -21.35579 -20.91272 -18.85960 -18.43566 -17.95793 -17.68370 -17.60987 -17.30138 -16.78656 -16.50551 -16.43703 -15.77526 -15.58776 -15.51874 -15.00285 -14.85649 -14.60260 -14.25056 -14.21752 -13.88460 -13.70475 -13.54383 -13.45384 -13.12192 -13.03561 -12.98782 -12.78319 -12.58955 -12.46775 -12.39322 -12.06046 -11.91520 -11.77092 -11.76005 -11.47656 -11.30370 -11.23420 -10.88878 -10.53443 -10.26635 -10.05069 -10.00802 -8.72312 -7.89103 -5.36531 0.83155 1.43865 1.46040 1.47275 1.54385 1.55834 1.72513 2.26615 2.50076 2.78336 3.18124 3.25959 3.57254 3.73165 3.88160 4.08678 4.15927 4.20644 4.23499 4.26383 4.32952 4.36737 4.40856 4.48176 4.55969 4.59515 4.62252 4.68194 4.73065 4.76036 4.87603 4.88519 4.93428 5.09431 5.15663 5.19677 5.21336 5.25786 5.34308 5.47143 5.50132 5.61517 5.75384 5.79829 6.35708 6.62653 6.76266 7.14328 7.31431 7.36099 7.86685 8.27968 9.16510 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018635 B = 0.001941 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.178401 B =14422.278470 C =14693.044294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.163 5.163 3 N -0.312 5.312 4 C -0.026 4.026 5 C -0.003 4.003 6 C -0.007 4.007 7 C -0.122 4.122 8 C 0.513 3.487 9 O -0.584 6.584 10 N -0.715 5.715 11 C 0.142 3.858 12 C 0.086 3.914 13 H 0.046 0.954 14 C 0.122 3.878 15 N -0.606 5.606 16 C -0.267 4.267 17 H 0.069 0.931 18 C -0.048 4.048 19 N -0.935 5.935 20 Si 0.965 3.035 21 H -0.284 1.284 22 H -0.298 1.298 23 H -0.269 1.269 24 C 0.185 3.815 25 C -0.165 4.165 26 C 0.092 3.908 27 O -0.392 6.392 28 N -0.304 5.304 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.222 0.778 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.413 0.587 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.042 0.958 41 H 0.051 0.949 42 H 0.249 0.751 43 H 0.046 0.954 44 H -0.008 1.008 45 H 0.084 0.916 46 H 0.060 0.940 47 H 0.040 0.960 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.942 16.802 -10.758 27.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.065 5.065 3 N -0.153 5.153 4 C -0.208 4.208 5 C -0.166 4.166 6 C -0.047 4.047 7 C -0.162 4.162 8 C 0.301 3.699 9 O -0.464 6.464 10 N -0.366 5.366 11 C 0.018 3.982 12 C 0.024 3.976 13 H 0.063 0.937 14 C -0.006 4.006 15 N -0.328 5.328 16 C -0.397 4.397 17 H 0.086 0.914 18 C -0.243 4.243 19 N -0.581 5.581 20 Si 0.794 3.206 21 H -0.210 1.210 22 H -0.224 1.224 23 H -0.194 1.194 24 C 0.060 3.940 25 C -0.204 4.204 26 C 0.016 3.984 27 O -0.311 6.311 28 N -0.148 5.148 29 H 0.120 0.880 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.239 0.761 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.130 0.870 37 H 0.249 0.751 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.011 0.989 45 H 0.102 0.898 46 H 0.079 0.921 47 H 0.058 0.942 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -19.799 16.754 -11.429 28.343 hybrid contribution 1.521 -0.379 1.563 2.214 sum -18.277 16.375 -9.866 26.449 Atomic orbital electron populations 1.22519 0.68146 1.07296 1.06299 1.48393 1.10119 0.98817 1.49192 1.74028 1.04641 1.16778 1.19890 1.25165 0.94962 0.94908 1.05745 1.23311 0.92514 0.94654 1.06072 1.19556 0.91895 0.94725 0.98497 1.21541 0.95950 0.97206 1.01489 1.21105 0.87928 0.80641 0.80236 1.90691 1.45149 1.71798 1.38794 1.45917 1.25322 1.34810 1.30556 1.21158 0.89037 0.90501 0.97550 1.22290 0.88422 0.90407 0.96431 0.93655 1.21578 0.96173 0.94252 0.88568 1.44034 1.65968 1.15873 1.06889 1.19516 1.31954 0.91634 0.96644 0.91365 1.25785 0.99128 0.96474 1.02931 1.70232 1.48762 1.05853 1.33221 0.85298 0.77020 0.77950 0.80366 1.21032 1.22446 1.19359 1.20773 0.90453 0.84579 0.98154 1.22626 0.97580 0.99468 1.00681 1.22066 0.98652 0.87514 0.90189 1.86104 1.47525 1.50840 1.46591 1.73964 1.04200 1.16421 1.20195 0.87953 0.86622 0.86440 0.76107 0.88042 0.90340 0.87598 0.87037 0.75106 0.91729 0.90272 0.93984 0.93039 0.94149 0.93551 0.98950 0.89754 0.92149 0.94156 0.87430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.65 11.57 127.77 1.48 2.13 16 2 N -0.16 -2.78 4.35 -206.54 -0.90 -3.68 16 3 N -0.31 -5.87 12.05 -56.86 -0.69 -6.56 16 4 C -0.03 -0.44 12.15 85.11 1.03 0.60 16 5 C 0.00 -0.06 6.61 42.98 0.28 0.22 16 6 C -0.01 -0.12 5.10 29.85 0.15 0.03 16 7 C -0.12 -2.02 5.68 29.85 0.17 -1.85 16 8 C 0.51 12.26 7.83 87.66 0.69 12.95 16 9 O -0.58 -18.37 15.98 -3.06 -0.05 -18.41 16 10 N -0.71 -16.93 5.49 -463.05 -2.54 -19.48 16 11 C 0.14 4.07 5.34 86.38 0.46 4.53 16 12 C 0.09 2.84 2.68 31.21 0.08 2.93 16 13 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 14 C 0.12 4.94 5.12 87.25 0.45 5.39 16 15 N -0.61 -29.25 2.23 -698.17 -1.55 -30.81 16 16 C -0.27 -14.13 9.46 84.03 0.80 -13.34 16 17 H 0.07 3.51 7.88 -2.91 -0.02 3.49 16 18 C -0.05 -2.59 4.89 84.86 0.41 -2.18 16 19 N -0.93 -54.30 11.00 21.65 0.24 -54.06 16 20 Si 0.97 43.85 29.58 68.60 2.03 45.88 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 C 0.19 8.77 4.70 86.38 0.41 9.17 16 25 C -0.16 -5.89 5.78 30.30 0.18 -5.71 16 26 C 0.09 2.96 6.37 71.50 0.46 3.42 16 27 O -0.39 -12.69 9.38 -117.83 -1.11 -13.80 16 28 N -0.30 -6.00 12.05 -47.25 -0.57 -6.57 16 29 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.22 2.18 8.06 -2.91 -0.02 2.15 16 33 H 0.10 1.58 8.09 -2.39 -0.02 1.56 16 34 H 0.08 1.53 8.10 -2.39 -0.02 1.51 16 35 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.41 8.19 8.46 -92.70 -0.78 7.40 16 38 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 40 H 0.04 1.70 8.11 -2.39 -0.02 1.68 16 41 H 0.05 2.10 7.98 -2.39 -0.02 2.08 16 42 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 43 H 0.05 2.44 6.37 -2.38 -0.02 2.43 16 44 H -0.01 -0.41 8.04 -2.39 -0.02 -0.43 16 45 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 46 H 0.06 2.15 8.01 -2.39 -0.02 2.13 16 47 H 0.04 1.49 7.40 -2.38 -0.02 1.47 16 48 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -72.98 392.94 2.08 -70.89 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.18 Total: 18.29 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: 7.04 Total: 18.29 kcal Atomic # 7 Polarization: -115.13 SS G_CDS: -6.01 Total: -121.14 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -1.15 Total: -32.21 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -72.98 2.08 -70.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150324609.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.093 kcal (2) G-P(sol) polarization free energy of solvation -72.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds