Wall clock time and date at job start Tue Mar 31 2020 21:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35316 * 125.86745 * 2 1 4 4 C 1.35352 * 106.17820 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.75535 * 180.02562 * 4 3 2 6 6 C 1.52992 * 109.47354 * 124.99901 * 5 4 3 7 7 C 1.50698 * 109.47354 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99983 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00473 * 179.72551 * 7 6 5 10 10 C 1.46493 * 120.00086 * 179.97438 * 9 7 6 11 11 C 1.53007 * 109.47038 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.46895 * 305.00572 * 11 10 9 13 13 C 1.54810 * 109.47138 * 185.00992 * 11 10 9 14 14 N 1.45123 * 109.53763 * 172.10727 * 13 11 10 15 15 C 1.36928 * 118.76100 * 269.29052 * 14 13 11 16 16 H 1.08005 * 119.99905 * 26.08844 * 15 14 13 17 17 C 1.38808 * 120.00310 * 206.09460 * 15 14 13 18 18 N 1.31619 * 119.99895 * 15.47415 * 17 15 14 19 19 Si 1.86801 * 120.00129 * 195.47927 * 17 15 14 20 20 H 1.48499 * 109.47032 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47219 * 119.99949 * 19 17 15 22 22 H 1.48503 * 109.47126 * 239.99386 * 19 17 15 23 23 C 1.47516 * 122.47961 * 89.28971 * 14 13 11 24 24 C 1.53564 * 111.02847 * 318.37292 * 23 14 13 25 25 C 1.51536 * 109.58534 * 320.02095 * 24 23 14 26 26 O 1.38014 * 109.46771 * 64.99989 * 11 10 9 27 27 N 1.33777 * 106.49401 * 0.26181 * 4 3 2 28 28 N 1.28630 * 108.88583 * 359.56481 * 27 4 3 29 29 H 1.09005 * 109.47135 * 90.00119 * 1 2 3 30 30 H 1.09003 * 109.46698 * 209.99638 * 1 2 3 31 31 H 1.08996 * 109.47263 * 329.99965 * 1 2 3 32 32 H 1.07998 * 126.91120 * 359.94521 * 3 2 1 33 33 H 1.08997 * 109.46775 * 4.99358 * 5 4 3 34 34 H 1.09004 * 109.47087 * 245.00504 * 5 4 3 35 35 H 1.09004 * 109.47460 * 60.00334 * 6 5 4 36 36 H 1.09000 * 109.47048 * 300.00185 * 6 5 4 37 37 H 0.97003 * 119.99933 * 359.97438 * 9 7 6 38 38 H 1.08998 * 109.47528 * 300.00018 * 10 9 7 39 39 H 1.09001 * 109.47573 * 59.99968 * 10 9 7 40 40 H 1.08999 * 109.45638 * 292.12962 * 13 11 10 41 41 H 1.09000 * 109.45641 * 52.09118 * 13 11 10 42 42 H 0.97000 * 120.00289 * 180.02562 * 18 17 15 43 43 H 1.08993 * 109.16172 * 197.97322 * 23 14 13 44 44 H 1.09004 * 109.11862 * 78.74687 * 23 14 13 45 45 H 1.09001 * 109.45311 * 199.98454 * 24 23 14 46 46 H 1.09002 * 109.45308 * 80.05479 * 24 23 14 47 47 H 1.09004 * 109.58830 * 331.61928 * 25 24 23 48 48 H 1.08998 * 109.59025 * 211.18607 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2578 1.0966 0.0000 4 6 3.5321 0.6405 0.0006 5 6 4.7880 1.4735 0.0014 6 6 5.6697 1.0658 1.1833 7 6 6.9253 1.8992 1.1844 8 8 7.0977 2.7372 0.3248 9 7 7.8539 1.7176 2.1442 10 6 9.0746 2.5274 2.1449 11 6 9.9535 2.1241 3.3307 12 1 9.3783 2.2040 4.2531 13 6 11.1819 3.0633 3.4056 14 7 11.9161 2.8053 4.6305 15 6 11.5961 3.5204 5.7535 16 1 10.6021 3.9264 5.8702 17 6 12.5493 3.7238 6.7419 18 7 13.8215 3.5068 6.4838 19 14 12.0263 4.3053 8.4383 20 1 10.5514 4.4747 8.4706 21 1 12.4319 3.2997 9.4531 22 1 12.6801 5.6041 8.7398 23 6 12.9942 1.8017 4.7114 24 6 12.6156 0.5236 3.9489 25 6 11.1532 0.2049 4.1861 26 8 10.3794 0.8217 3.1655 27 7 3.4576 -0.6951 -0.0050 28 7 2.2192 -1.0430 0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 1.9380 2.1281 -0.0008 33 1 4.5248 2.5274 0.0908 34 1 5.3313 1.3126 -0.9298 35 1 5.9330 0.0118 1.0938 36 1 5.1264 1.2267 2.1144 37 1 7.7139 1.0507 2.8346 38 1 9.6205 2.3628 1.2160 39 1 8.8113 3.5818 2.2295 40 1 11.8303 2.8821 2.5484 41 1 10.8470 4.1005 3.3946 42 1 14.4876 3.6486 7.1746 43 1 13.1748 1.5542 5.7574 44 1 13.9040 2.2195 4.2803 45 1 13.2296 -0.3050 4.3018 46 1 12.7862 0.6730 2.8827 47 1 10.8484 0.5903 5.1591 48 1 11.0048 -0.8745 4.1555 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150842853.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:15 Heat of formation + Delta-G solvation = 37.522997 kcal Electronic energy + Delta-G solvation = -28763.373400 eV Core-core repulsion = 24663.528057 eV Total energy + Delta-G solvation = -4099.845342 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.56505 -39.71553 -38.75405 -35.55838 -35.21730 -34.57373 -33.69741 -32.12916 -31.49389 -30.54712 -28.64198 -28.21512 -25.98256 -25.42727 -24.54478 -22.62097 -22.42463 -21.24786 -20.83016 -20.04803 -19.50392 -17.63380 -17.13698 -16.96997 -16.81332 -16.19883 -15.91002 -15.62663 -15.15371 -15.05519 -14.82404 -14.39110 -14.09634 -13.84944 -13.72921 -13.55627 -13.44422 -12.97984 -12.80173 -12.62779 -12.40868 -12.19404 -12.06458 -11.85401 -11.51695 -11.37278 -11.20984 -10.97869 -10.95041 -10.86636 -10.62827 -10.39279 -10.23512 -9.89531 -9.79529 -9.74609 -9.67972 -9.42449 -8.86937 -8.80037 -8.44248 -6.76169 -5.85009 -3.29748 1.24002 1.98341 2.21881 2.77289 3.31269 3.34527 3.40472 3.41898 3.93710 4.16434 4.19085 4.43023 4.43169 4.52083 4.67496 4.72611 4.86102 5.03653 5.11094 5.20994 5.33255 5.36809 5.46845 5.57606 5.64508 5.72409 5.75739 5.86951 5.89232 5.99951 6.01514 6.06685 6.18222 6.18673 6.28824 6.36260 6.53738 6.64911 6.71732 6.75806 6.83362 7.35331 7.62703 7.66806 7.75947 8.19298 8.23015 8.35707 8.38421 9.16112 9.81061 10.27259 11.22482 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019245 B = 0.001914 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.609861 B =14626.581921 C =15113.498752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.297 5.297 3 C -0.049 4.049 4 C -0.016 4.016 5 C -0.015 4.015 6 C -0.134 4.134 7 C 0.511 3.489 8 O -0.550 6.550 9 N -0.720 5.720 10 C 0.132 3.868 11 C 0.067 3.933 12 H 0.051 0.949 13 C 0.127 3.873 14 N -0.592 5.592 15 C -0.264 4.264 16 H 0.067 0.933 17 C 0.006 3.994 18 N -0.902 5.902 19 Si 0.902 3.098 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.177 3.823 24 C -0.177 4.177 25 C 0.088 3.912 26 O -0.395 6.395 27 N -0.263 5.263 28 N -0.088 5.088 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.191 0.809 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.403 0.597 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.044 0.956 41 H 0.055 0.945 42 H 0.254 0.746 43 H 0.075 0.925 44 H 0.027 0.973 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.733 -6.123 -10.739 26.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.091 5.091 3 C -0.200 4.200 4 C -0.154 4.154 5 C -0.055 4.055 6 C -0.175 4.175 7 C 0.298 3.702 8 O -0.428 6.428 9 N -0.371 5.371 10 C 0.008 3.992 11 C 0.005 3.995 12 H 0.069 0.931 13 C -0.002 4.002 14 N -0.313 5.313 15 C -0.394 4.394 16 H 0.084 0.916 17 C -0.193 4.193 18 N -0.546 5.546 19 Si 0.731 3.269 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.217 1.217 23 C 0.052 3.948 24 C -0.216 4.216 25 C 0.012 3.988 26 O -0.314 6.314 27 N -0.130 5.130 28 N -0.068 5.068 29 H 0.109 0.891 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.208 0.792 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.237 0.763 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.094 0.906 44 H 0.045 0.955 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.459 -7.130 -11.393 27.036 hybrid contribution -0.346 1.309 1.621 2.112 sum -23.805 -5.821 -9.772 26.382 Atomic orbital electron populations 1.22265 0.72758 1.05964 1.04997 1.47245 1.09401 1.05008 1.47410 1.23437 0.90877 0.94759 1.10908 1.22092 0.95416 0.91475 1.06375 1.19600 0.89267 0.97357 0.99285 1.21575 0.94067 1.01498 1.00332 1.20591 0.84738 0.83708 0.81185 1.90691 1.79023 1.35557 1.37550 1.46013 1.20232 1.40716 1.30106 1.21416 0.83835 0.94820 0.99125 1.22625 0.96269 0.84944 0.95695 0.93115 1.21417 0.92068 0.96650 0.90046 1.43840 1.39922 1.41273 1.06246 1.19255 0.95128 1.29128 0.95854 0.91557 1.25049 0.94882 0.99761 0.99617 1.70079 0.99350 1.52679 1.32476 0.86242 0.78050 0.78042 0.84532 1.20262 1.21534 1.21654 1.20995 0.89345 0.84942 0.99511 1.22771 0.96804 1.00585 1.01429 1.22012 0.90405 0.95050 0.91333 1.86081 1.71416 1.27412 1.46539 1.75070 1.09321 1.12108 1.16494 1.78326 0.96505 1.12142 1.19786 0.89085 0.88023 0.88260 0.79162 0.89285 0.89174 0.88067 0.89060 0.76277 0.91013 0.90290 0.93813 0.92643 0.93618 0.90647 0.95481 0.92119 0.92369 0.92084 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.17 11.39 59.84 0.68 0.85 16 2 N -0.30 -2.21 3.74 -68.06 -0.25 -2.46 16 3 C -0.05 -0.35 11.54 -17.04 -0.20 -0.55 16 4 C -0.02 -0.15 6.50 -82.77 -0.54 -0.69 16 5 C -0.02 -0.15 5.08 -27.89 -0.14 -0.29 16 6 C -0.13 -1.34 5.68 -27.89 -0.16 -1.50 16 7 C 0.51 6.76 7.83 -10.99 -0.09 6.67 16 8 O -0.55 -9.08 15.98 5.55 0.09 -8.99 16 9 N -0.72 -9.53 5.49 -60.30 -0.33 -9.86 16 10 C 0.13 2.01 5.34 -4.04 -0.02 1.99 16 11 C 0.07 1.16 2.68 -25.77 -0.07 1.09 16 12 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 13 C 0.13 2.61 5.12 -3.83 -0.02 2.59 16 14 N -0.59 -14.22 2.23 -172.02 -0.38 -14.60 16 15 C -0.26 -6.96 9.46 -15.06 -0.14 -7.10 16 16 H 0.07 1.72 7.88 -52.48 -0.41 1.31 16 17 C 0.01 0.16 4.89 -17.43 -0.09 0.07 16 18 N -0.90 -25.55 11.00 55.49 0.61 -24.94 16 19 Si 0.90 21.19 29.58 -169.99 -5.03 16.16 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 C 0.18 4.13 4.70 -3.19 -0.02 4.12 16 24 C -0.18 -3.32 5.78 -27.18 -0.16 -3.48 16 25 C 0.09 1.55 6.37 36.42 0.23 1.78 16 26 O -0.40 -6.98 9.38 -26.53 -0.25 -7.23 16 27 N -0.26 -3.27 12.40 33.29 0.41 -2.86 16 28 N -0.09 -0.99 13.17 60.35 0.79 -0.20 16 29 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 30 H 0.10 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.10 -0.04 8.14 -51.93 -0.42 -0.46 16 32 H 0.19 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.09 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.40 4.71 8.46 -40.82 -0.35 4.36 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 41 H 0.06 1.13 7.98 -51.93 -0.41 0.72 16 42 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.08 1.94 6.37 -51.93 -0.33 1.61 16 44 H 0.03 0.69 8.04 -51.93 -0.42 0.28 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.06 1.09 8.01 -51.93 -0.42 0.68 16 47 H 0.06 1.19 7.40 -51.93 -0.38 0.81 16 48 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 392.87 15.07 5.92 5.92 Total: -1.00 -34.44 392.87 -6.90 -41.35 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -7.77 Total: 2.16 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -0.72 Total: 5.56 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.85 Total: -54.93 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.16 Total: -16.23 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.44 -6.90 -41.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150842853.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.871 kcal (2) G-P(sol) polarization free energy of solvation -34.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds