Wall clock time and date at job start Tue Mar 31 2020 21:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35316 * 125.86745 * 2 1 4 4 C 1.35352 * 106.17820 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.75535 * 180.02562 * 4 3 2 6 6 C 1.52992 * 109.47354 * 124.99901 * 5 4 3 7 7 C 1.50698 * 109.47354 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99983 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00473 * 179.72551 * 7 6 5 10 10 C 1.46493 * 120.00086 * 179.97438 * 9 7 6 11 11 C 1.53007 * 109.47038 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.46895 * 305.00572 * 11 10 9 13 13 C 1.54810 * 109.47138 * 185.00992 * 11 10 9 14 14 N 1.45123 * 109.53763 * 172.10727 * 13 11 10 15 15 C 1.36928 * 118.76100 * 269.29052 * 14 13 11 16 16 H 1.08005 * 119.99905 * 26.08844 * 15 14 13 17 17 C 1.38808 * 120.00310 * 206.09460 * 15 14 13 18 18 N 1.31619 * 119.99895 * 15.47415 * 17 15 14 19 19 Si 1.86801 * 120.00129 * 195.47927 * 17 15 14 20 20 H 1.48499 * 109.47032 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47219 * 119.99949 * 19 17 15 22 22 H 1.48503 * 109.47126 * 239.99386 * 19 17 15 23 23 C 1.47516 * 122.47961 * 89.28971 * 14 13 11 24 24 C 1.53564 * 111.02847 * 318.37292 * 23 14 13 25 25 C 1.51536 * 109.58534 * 320.02095 * 24 23 14 26 26 O 1.38014 * 109.46771 * 64.99989 * 11 10 9 27 27 N 1.33777 * 106.49401 * 0.26181 * 4 3 2 28 28 N 1.28630 * 108.88583 * 359.56481 * 27 4 3 29 29 H 1.09005 * 109.47135 * 90.00119 * 1 2 3 30 30 H 1.09003 * 109.46698 * 209.99638 * 1 2 3 31 31 H 1.08996 * 109.47263 * 329.99965 * 1 2 3 32 32 H 1.07998 * 126.91120 * 359.94521 * 3 2 1 33 33 H 1.08997 * 109.46775 * 4.99358 * 5 4 3 34 34 H 1.09004 * 109.47087 * 245.00504 * 5 4 3 35 35 H 1.09004 * 109.47460 * 60.00334 * 6 5 4 36 36 H 1.09000 * 109.47048 * 300.00185 * 6 5 4 37 37 H 0.97003 * 119.99933 * 359.97438 * 9 7 6 38 38 H 1.08998 * 109.47528 * 300.00018 * 10 9 7 39 39 H 1.09001 * 109.47573 * 59.99968 * 10 9 7 40 40 H 1.08999 * 109.45638 * 292.12962 * 13 11 10 41 41 H 1.09000 * 109.45641 * 52.09118 * 13 11 10 42 42 H 0.97000 * 120.00289 * 180.02562 * 18 17 15 43 43 H 1.08993 * 109.16172 * 197.97322 * 23 14 13 44 44 H 1.09004 * 109.11862 * 78.74687 * 23 14 13 45 45 H 1.09001 * 109.45311 * 199.98454 * 24 23 14 46 46 H 1.09002 * 109.45308 * 80.05479 * 24 23 14 47 47 H 1.09004 * 109.58830 * 331.61928 * 25 24 23 48 48 H 1.08998 * 109.59025 * 211.18607 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2578 1.0966 0.0000 4 6 3.5321 0.6405 0.0006 5 6 4.7880 1.4735 0.0014 6 6 5.6697 1.0658 1.1833 7 6 6.9253 1.8992 1.1844 8 8 7.0977 2.7372 0.3248 9 7 7.8539 1.7176 2.1442 10 6 9.0746 2.5274 2.1449 11 6 9.9535 2.1241 3.3307 12 1 9.3783 2.2040 4.2531 13 6 11.1819 3.0633 3.4056 14 7 11.9161 2.8053 4.6305 15 6 11.5961 3.5204 5.7535 16 1 10.6021 3.9264 5.8702 17 6 12.5493 3.7238 6.7419 18 7 13.8215 3.5068 6.4838 19 14 12.0263 4.3053 8.4383 20 1 10.5514 4.4747 8.4706 21 1 12.4319 3.2997 9.4531 22 1 12.6801 5.6041 8.7398 23 6 12.9942 1.8017 4.7114 24 6 12.6156 0.5236 3.9489 25 6 11.1532 0.2049 4.1861 26 8 10.3794 0.8217 3.1655 27 7 3.4576 -0.6951 -0.0050 28 7 2.2192 -1.0430 0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 1.9380 2.1281 -0.0008 33 1 4.5248 2.5274 0.0908 34 1 5.3313 1.3126 -0.9298 35 1 5.9330 0.0118 1.0938 36 1 5.1264 1.2267 2.1144 37 1 7.7139 1.0507 2.8346 38 1 9.6205 2.3628 1.2160 39 1 8.8113 3.5818 2.2295 40 1 11.8303 2.8821 2.5484 41 1 10.8470 4.1005 3.3946 42 1 14.4876 3.6486 7.1746 43 1 13.1748 1.5542 5.7574 44 1 13.9040 2.2195 4.2803 45 1 13.2296 -0.3050 4.3018 46 1 12.7862 0.6730 2.8827 47 1 10.8484 0.5903 5.1591 48 1 11.0048 -0.8745 4.1555 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150842853.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:14 Heat of formation + Delta-G solvation = 13.055850 kcal Electronic energy + Delta-G solvation = -28764.434375 eV Core-core repulsion = 24663.528057 eV Total energy + Delta-G solvation = -4100.906317 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.18339 -40.93742 -40.16174 -37.00483 -36.17672 -35.80432 -34.40620 -33.62346 -33.39374 -31.35004 -30.02317 -28.68500 -27.43286 -27.09411 -25.77576 -24.10395 -22.99356 -22.27606 -22.00425 -21.39308 -20.96753 -18.85959 -18.33211 -17.85669 -17.63828 -17.47568 -17.26434 -16.77966 -16.56152 -16.42855 -15.73583 -15.69308 -15.50697 -14.99203 -14.75761 -14.67789 -14.26476 -14.05650 -14.01250 -13.71325 -13.50320 -13.44968 -13.12933 -13.11126 -12.97825 -12.79849 -12.55723 -12.46223 -12.37694 -12.24732 -12.04971 -11.76869 -11.62715 -11.46748 -11.30602 -10.99271 -10.87105 -10.54007 -10.26800 -10.10268 -10.01640 -8.72137 -7.89104 -5.36377 0.67808 1.44784 1.47280 1.50128 1.57027 1.61706 1.72190 2.27462 2.50103 2.78422 3.26132 3.39585 3.57506 3.76163 3.87316 4.07885 4.09158 4.16135 4.20375 4.23065 4.29245 4.36432 4.37669 4.45313 4.55136 4.61929 4.66081 4.67457 4.72284 4.75919 4.81738 4.87951 4.93154 5.06812 5.15453 5.17393 5.19655 5.25364 5.28952 5.47152 5.50056 5.61655 5.72428 5.75334 6.35826 6.62228 6.76466 7.14320 7.30856 7.53487 7.86636 8.28149 9.16756 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019245 B = 0.001914 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.609861 B =14626.581921 C =15113.498752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.289 5.289 3 C -0.031 4.031 4 C -0.038 4.038 5 C -0.009 4.009 6 C -0.122 4.122 7 C 0.513 3.487 8 O -0.584 6.584 9 N -0.715 5.715 10 C 0.142 3.858 11 C 0.086 3.914 12 H 0.046 0.954 13 C 0.122 3.878 14 N -0.605 5.605 15 C -0.267 4.267 16 H 0.069 0.931 17 C -0.048 4.048 18 N -0.935 5.935 19 Si 0.965 3.035 20 H -0.265 1.265 21 H -0.290 1.290 22 H -0.295 1.295 23 C 0.186 3.814 24 C -0.165 4.165 25 C 0.091 3.909 26 O -0.392 6.392 27 N -0.304 5.304 28 N -0.126 5.126 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.131 0.869 32 H 0.233 0.767 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.413 0.587 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.042 0.958 41 H 0.052 0.948 42 H 0.249 0.751 43 H 0.046 0.954 44 H -0.007 1.007 45 H 0.084 0.916 46 H 0.060 0.940 47 H 0.041 0.959 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.755 -6.324 -10.757 29.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.083 5.083 3 C -0.183 4.183 4 C -0.177 4.177 5 C -0.049 4.049 6 C -0.163 4.163 7 C 0.302 3.698 8 O -0.464 6.464 9 N -0.366 5.366 10 C 0.018 3.982 11 C 0.024 3.976 12 H 0.063 0.937 13 C -0.006 4.006 14 N -0.327 5.327 15 C -0.397 4.397 16 H 0.087 0.913 17 C -0.243 4.243 18 N -0.581 5.581 19 Si 0.793 3.207 20 H -0.190 1.190 21 H -0.217 1.217 22 H -0.222 1.222 23 C 0.061 3.939 24 C -0.204 4.204 25 C 0.015 3.985 26 O -0.312 6.312 27 N -0.170 5.170 28 N -0.105 5.105 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.149 0.851 32 H 0.249 0.751 33 H 0.120 0.880 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.130 0.870 37 H 0.249 0.751 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.011 0.989 45 H 0.102 0.898 46 H 0.078 0.922 47 H 0.059 0.941 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -26.539 -7.379 -11.423 29.821 hybrid contribution 0.532 1.424 1.553 2.173 sum -26.007 -5.956 -9.871 28.448 Atomic orbital electron populations 1.22735 0.69849 1.07778 1.06627 1.47670 1.11022 1.04305 1.45310 1.24035 0.89849 0.96238 1.08165 1.22226 0.96596 0.90930 1.07928 1.19511 0.89138 0.98028 0.98174 1.21523 0.92540 1.00570 1.01620 1.21108 0.85250 0.83290 0.80199 1.90679 1.79782 1.37188 1.38790 1.45929 1.19521 1.40633 1.30566 1.21163 0.84341 0.95188 0.97548 1.22303 0.94794 0.84058 0.96414 0.93658 1.21580 0.92943 0.97454 0.88584 1.44037 1.40268 1.41557 1.06888 1.19548 0.95082 1.28465 0.96598 0.91339 1.25784 0.94905 1.00697 1.02937 1.70239 1.00268 1.54396 1.33194 0.85246 0.78139 0.76987 0.80296 1.18959 1.21655 1.22188 1.20768 0.88266 0.86745 0.98149 1.22628 0.98327 0.98722 1.00688 1.22069 0.89212 0.96957 0.90218 1.86110 1.71258 1.27176 1.46609 1.74993 1.10373 1.13701 1.17934 1.78236 0.96655 1.13758 1.21847 0.87494 0.87694 0.85074 0.75093 0.88050 0.90908 0.88084 0.87026 0.75145 0.91795 0.90159 0.93999 0.92952 0.94152 0.93526 0.98920 0.89758 0.92167 0.94082 0.87527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.09 11.39 127.77 1.46 1.54 16 2 N -0.29 -3.67 3.74 -369.24 -1.38 -5.06 16 3 C -0.03 -0.36 11.54 83.49 0.96 0.61 16 4 C -0.04 -0.69 6.50 41.60 0.27 -0.42 16 5 C -0.01 -0.16 5.08 29.84 0.15 -0.01 16 6 C -0.12 -2.24 5.68 29.84 0.17 -2.07 16 7 C 0.51 12.86 7.83 87.66 0.69 13.55 16 8 O -0.58 -18.78 15.98 -3.05 -0.05 -18.83 16 9 N -0.72 -17.76 5.49 -463.06 -2.54 -20.30 16 10 C 0.14 4.18 5.34 86.38 0.46 4.64 16 11 C 0.09 2.90 2.68 31.21 0.08 2.98 16 12 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 13 C 0.12 5.01 5.12 87.26 0.45 5.45 16 14 N -0.61 -29.48 2.23 -698.16 -1.55 -31.03 16 15 C -0.27 -14.18 9.46 84.03 0.80 -13.38 16 16 H 0.07 3.54 7.88 -2.91 -0.02 3.52 16 17 C -0.05 -2.61 4.89 84.86 0.41 -2.20 16 18 N -0.94 -54.53 11.00 21.65 0.24 -54.29 16 19 Si 0.96 43.99 29.58 68.60 2.03 46.02 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 C 0.19 8.87 4.70 86.37 0.41 9.28 16 24 C -0.16 -6.01 5.78 30.30 0.18 -5.84 16 25 C 0.09 3.03 6.37 71.50 0.46 3.49 16 26 O -0.39 -13.13 9.38 -117.86 -1.11 -14.24 16 27 N -0.30 -7.46 12.40 -48.60 -0.60 -8.06 16 28 N -0.13 -2.76 13.17 37.02 0.49 -2.27 16 29 H 0.11 -0.15 8.14 -2.38 -0.02 -0.17 16 30 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.13 -0.65 8.14 -2.39 -0.02 -0.67 16 32 H 0.23 0.47 8.06 -2.91 -0.02 0.44 16 33 H 0.10 1.52 8.08 -2.39 -0.02 1.50 16 34 H 0.07 1.53 8.10 -2.39 -0.02 1.51 16 35 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.41 8.76 8.46 -92.71 -0.78 7.97 16 38 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.04 1.71 8.11 -2.39 -0.02 1.69 16 41 H 0.05 2.15 7.98 -2.39 -0.02 2.13 16 42 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 43 H 0.05 2.47 6.37 -2.39 -0.02 2.46 16 44 H -0.01 -0.39 8.04 -2.39 -0.02 -0.41 16 45 H 0.08 2.68 8.14 -2.39 -0.02 2.67 16 46 H 0.06 2.19 8.01 -2.39 -0.02 2.17 16 47 H 0.04 1.55 7.40 -2.38 -0.02 1.53 16 48 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -77.15 392.87 2.63 -74.51 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.18 Total: 15.92 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: 6.94 Total: 17.62 kcal Atomic # 7 Polarization: -115.65 SS G_CDS: -5.36 Total: -121.00 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -1.15 Total: -33.07 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -77.15 2.63 -74.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150842853.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.570 kcal (2) G-P(sol) polarization free energy of solvation -77.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds