Wall clock time and date at job start Tue Mar 31 2020 21:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46512 * 1 3 3 C 1.35312 * 125.86617 * 2 1 4 4 C 1.35346 * 106.17358 * 179.90726 * 3 2 1 5 5 C 1.50698 * 126.75398 * 180.12976 * 4 3 2 6 6 C 1.52995 * 109.47611 * 125.24656 * 5 4 3 7 7 C 1.50698 * 109.47611 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99521 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00149 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99911 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47067 * 180.02562 * 10 9 7 12 12 H 1.09001 * 108.57702 * 59.99420 * 11 10 9 13 13 C 1.46920 * 108.62159 * 177.93950 * 11 10 9 14 14 N 1.50116 * 106.77869 * 177.91644 * 13 11 10 15 15 C 1.36936 * 120.63315 * 111.33403 * 14 13 11 16 16 H 1.08003 * 119.99688 * 320.49745 * 15 14 13 17 17 C 1.38808 * 120.00419 * 140.50931 * 15 14 13 18 18 N 1.31612 * 120.00646 * 156.58232 * 17 15 14 19 19 Si 1.86803 * 119.99589 * 336.58444 * 17 15 14 20 20 H 1.48496 * 109.47551 * 95.55407 * 19 17 15 21 21 H 1.48504 * 109.47215 * 215.55873 * 19 17 15 22 22 H 1.48498 * 109.47379 * 335.55212 * 19 17 15 23 23 C 1.43417 * 118.72828 * 291.35117 * 14 13 11 24 24 C 1.55330 * 116.23988 * 89.35420 * 23 14 13 25 25 C 1.55182 * 108.87412 * 319.46361 * 24 23 14 26 26 O 1.39811 * 110.45483 * 322.14020 * 25 24 23 27 27 N 1.33773 * 106.49487 * 0.35277 * 4 3 2 28 28 N 1.28634 * 108.88902 * 359.77545 * 27 4 3 29 29 H 1.09000 * 109.46315 * 269.71084 * 1 2 3 30 30 H 1.09000 * 109.47204 * 149.71211 * 1 2 3 31 31 H 1.08997 * 109.46831 * 29.71234 * 1 2 3 32 32 H 1.07998 * 126.91556 * 0.02562 * 3 2 1 33 33 H 1.09003 * 109.47058 * 245.24629 * 5 4 3 34 34 H 1.08997 * 109.47230 * 5.24256 * 5 4 3 35 35 H 1.09003 * 109.46887 * 300.00077 * 6 5 4 36 36 H 1.08997 * 109.47150 * 59.99551 * 6 5 4 37 37 H 0.96995 * 120.00142 * 0.02562 * 9 7 6 38 38 H 1.09004 * 109.46385 * 299.99628 * 10 9 7 39 39 H 1.08990 * 109.47232 * 59.99311 * 10 9 7 40 40 H 1.08994 * 109.98973 * 297.23642 * 13 11 10 41 41 H 1.09005 * 109.99006 * 58.50589 * 13 11 10 42 42 H 0.96997 * 120.00554 * 179.97438 * 18 17 15 43 43 H 1.09006 * 108.12569 * 211.11043 * 23 14 13 44 44 H 1.09003 * 108.13227 * 327.59244 * 23 14 13 45 45 H 1.09001 * 109.57000 * 79.27873 * 24 23 14 46 46 H 1.09006 * 109.56798 * 199.64081 * 24 23 14 47 47 H 1.08998 * 109.26273 * 82.42205 * 25 24 23 48 48 H 1.09005 * 109.25772 * 201.86749 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2579 1.0966 0.0000 4 6 3.5322 0.6405 0.0021 5 6 4.7881 1.4734 0.0057 6 6 5.6708 1.0602 1.1850 7 6 6.9270 1.8927 1.1883 8 8 7.0990 2.7341 0.3318 9 7 7.8587 1.7030 2.1434 10 6 9.0796 2.5128 2.1468 11 6 9.9624 2.0995 3.3260 12 1 10.2163 1.0451 3.2169 13 6 11.2017 2.8873 3.2830 14 7 12.0112 2.4875 4.4824 15 6 13.1776 1.7855 4.3345 16 1 13.2461 1.0021 3.5942 17 6 14.2717 2.0805 5.1362 18 7 15.2003 1.1710 5.3432 19 14 14.4261 3.7684 5.9214 20 1 13.8879 3.7221 7.3047 21 1 15.8559 4.1677 5.9596 22 1 13.6572 4.7575 5.1241 23 6 11.5393 2.8546 5.7860 24 6 10.5914 1.8410 6.4838 25 6 9.6053 1.2690 5.4309 26 8 9.2203 2.2661 4.5297 27 7 3.4576 -0.6952 -0.0046 28 7 2.2192 -1.0431 -0.0057 29 1 -0.3632 -0.0052 1.0277 30 1 -0.3633 -0.8874 -0.5183 31 1 -0.3633 0.8925 -0.5094 32 1 1.9382 2.1281 0.0004 33 1 5.3306 1.3167 -0.9266 34 1 4.5251 2.5269 0.1003 35 1 5.1283 1.2169 2.1174 36 1 5.9338 0.0067 1.0904 37 1 7.7209 1.0304 2.8285 38 1 9.6223 2.3557 1.2146 39 1 8.8166 3.5663 2.2409 40 1 11.7535 2.6643 2.3699 41 1 10.9687 3.9513 3.3268 42 1 15.9650 1.3773 5.9031 43 1 12.4057 3.0072 6.4297 44 1 11.0149 3.8064 5.7014 45 1 11.1779 1.0290 6.9138 46 1 10.0322 2.3466 7.2712 47 1 10.0906 0.4589 4.8866 48 1 8.7220 0.8816 5.9388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150842854.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:22 Heat of formation + Delta-G solvation = 48.192456 kcal Electronic energy + Delta-G solvation = -28882.208184 eV Core-core repulsion = 24782.825504 eV Total energy + Delta-G solvation = -4099.382680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.59567 -39.94828 -39.06316 -35.59122 -35.29878 -34.76176 -33.73944 -32.27506 -31.75573 -30.57950 -28.95382 -28.32301 -26.37260 -25.55736 -24.56167 -22.47123 -22.43713 -21.27768 -21.19531 -20.25585 -19.90347 -17.67287 -17.22802 -17.02820 -16.89498 -16.17612 -15.93630 -15.68679 -15.54741 -15.08470 -14.70961 -14.46161 -14.22808 -14.07474 -13.92287 -13.62232 -13.49433 -13.14500 -12.91888 -12.61466 -12.52113 -12.42684 -12.31535 -11.91813 -11.88863 -11.65170 -11.52546 -11.22256 -10.98298 -10.78386 -10.52283 -10.42395 -10.39793 -10.19365 -9.89174 -9.74856 -9.62569 -9.46395 -9.03464 -8.95352 -8.51726 -6.84383 -6.06553 -3.50991 1.21276 1.95661 2.18682 2.69664 3.25308 3.30999 3.45332 3.52584 3.90568 4.13515 4.25170 4.41163 4.47598 4.49130 4.63376 4.70522 4.77158 4.80558 4.97853 5.06557 5.18710 5.30342 5.36782 5.38384 5.44058 5.60778 5.71363 5.73092 5.79486 5.83445 5.86784 5.95806 5.99963 6.05489 6.15396 6.16079 6.25562 6.48402 6.51403 6.58383 6.61302 6.78566 6.85321 7.56463 7.62636 8.02078 8.16393 8.26846 8.28919 8.93862 9.64615 10.09318 11.08342 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.029465 B = 0.001869 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.045679 B =14975.825278 C =15218.076781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.297 5.297 3 C -0.049 4.049 4 C -0.016 4.016 5 C -0.015 4.015 6 C -0.134 4.134 7 C 0.512 3.488 8 O -0.548 6.548 9 N -0.720 5.720 10 C 0.116 3.884 11 C 0.062 3.938 12 H 0.069 0.931 13 C 0.113 3.887 14 N -0.598 5.598 15 C -0.275 4.275 16 H 0.076 0.924 17 C 0.043 3.957 18 N -0.894 5.894 19 Si 0.879 3.121 20 H -0.286 1.286 21 H -0.301 1.301 22 H -0.269 1.269 23 C 0.152 3.848 24 C -0.168 4.168 25 C 0.065 3.935 26 O -0.356 6.356 27 N -0.263 5.263 28 N -0.088 5.088 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.191 0.809 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.402 0.598 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.043 0.957 42 H 0.264 0.736 43 H 0.042 0.958 44 H 0.032 0.968 45 H 0.066 0.934 46 H 0.055 0.945 47 H 0.059 0.941 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.223 0.178 -7.771 30.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.090 5.090 3 C -0.200 4.200 4 C -0.154 4.154 5 C -0.055 4.055 6 C -0.175 4.175 7 C 0.299 3.701 8 O -0.426 6.426 9 N -0.371 5.371 10 C -0.009 4.009 11 C 0.002 3.998 12 H 0.087 0.913 13 C -0.012 4.012 14 N -0.321 5.321 15 C -0.403 4.403 16 H 0.094 0.906 17 C -0.159 4.159 18 N -0.534 5.534 19 Si 0.709 3.291 20 H -0.214 1.214 21 H -0.228 1.228 22 H -0.194 1.194 23 C 0.024 3.976 24 C -0.209 4.209 25 C -0.013 4.013 26 O -0.274 6.274 27 N -0.130 5.130 28 N -0.067 5.067 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.208 0.792 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.237 0.763 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.084 0.916 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -29.032 -0.653 -8.302 30.203 hybrid contribution 0.063 1.537 1.063 1.870 sum -28.969 0.884 -7.239 29.872 Atomic orbital electron populations 1.22272 0.72728 1.05926 1.05068 1.47250 1.09420 1.04997 1.47365 1.23434 0.90876 0.94764 1.10896 1.22078 0.95402 0.91483 1.06442 1.19597 0.89284 0.97355 0.99261 1.21575 0.94033 1.01414 1.00454 1.20594 0.84708 0.83737 0.81089 1.90695 1.78954 1.35303 1.37694 1.45925 1.20325 1.40325 1.30493 1.21698 0.84913 0.96019 0.98227 1.21995 0.92384 1.01277 0.84122 0.91267 1.21042 0.90751 0.96810 0.92622 1.44092 1.23603 1.65464 0.98905 1.18699 0.87511 1.11826 1.22258 0.90626 1.25518 0.95306 0.96996 0.98082 1.69878 1.12560 1.32572 1.38436 0.86884 0.75992 0.87371 0.78897 1.21356 1.22848 1.19375 1.20616 0.95193 0.94448 0.87302 1.23496 0.98109 1.01306 0.98022 1.22459 0.96671 0.90228 0.91908 1.87634 1.61088 1.53597 1.25083 1.75068 1.09348 1.12084 1.16511 1.78328 0.96495 1.12129 1.19759 0.89014 0.88038 0.88270 0.79165 0.89162 0.89291 0.88976 0.88081 0.76346 0.90320 0.90913 0.90057 0.93854 0.92595 0.93973 0.94987 0.91563 0.92674 0.92304 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.15 11.39 59.85 0.68 0.83 16 2 N -0.30 -2.12 3.74 -68.05 -0.25 -2.38 16 3 C -0.05 -0.34 11.54 -17.05 -0.20 -0.53 16 4 C -0.02 -0.15 6.50 -82.78 -0.54 -0.69 16 5 C -0.02 -0.14 5.08 -27.89 -0.14 -0.28 16 6 C -0.13 -1.26 5.68 -27.89 -0.16 -1.42 16 7 C 0.51 6.38 7.83 -10.99 -0.09 6.29 16 8 O -0.55 -8.66 15.98 5.56 0.09 -8.57 16 9 N -0.72 -8.79 5.41 -60.30 -0.33 -9.11 16 10 C 0.12 1.62 5.25 -4.04 -0.02 1.60 16 11 C 0.06 0.98 2.13 -29.65 -0.06 0.92 16 12 H 0.07 1.13 6.76 -51.93 -0.35 0.78 16 13 C 0.11 2.12 5.58 -4.93 -0.03 2.09 16 14 N -0.60 -13.72 2.16 -174.50 -0.38 -14.10 16 15 C -0.27 -7.40 9.93 -15.06 -0.15 -7.55 16 16 H 0.08 2.19 8.06 -52.48 -0.42 1.76 16 17 C 0.04 1.20 5.27 -17.43 -0.09 1.11 16 18 N -0.89 -26.68 13.97 55.49 0.78 -25.91 16 19 Si 0.88 22.13 25.24 -169.99 -4.29 17.84 16 20 H -0.29 -7.05 6.74 56.52 0.38 -6.67 16 21 H -0.30 -7.66 7.11 56.52 0.40 -7.25 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.15 3.31 4.29 -4.44 -0.02 3.29 16 24 C -0.17 -3.10 6.75 -24.34 -0.16 -3.26 16 25 C 0.06 1.04 6.38 38.31 0.24 1.29 16 26 O -0.36 -5.81 9.44 -32.42 -0.31 -6.12 16 27 N -0.26 -3.18 12.40 33.29 0.41 -2.77 16 28 N -0.09 -0.96 13.17 60.35 0.79 -0.17 16 29 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 30 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.10 -0.07 8.14 -51.93 -0.42 -0.49 16 32 H 0.19 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 34 H 0.09 0.72 8.08 -51.93 -0.42 0.30 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.40 4.27 8.26 -40.82 -0.34 3.93 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.08 1.49 8.00 -51.93 -0.42 1.08 16 41 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.04 1.01 3.45 -51.93 -0.18 0.83 16 44 H 0.03 0.67 7.99 -51.93 -0.41 0.26 16 45 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.06 0.99 6.66 -51.93 -0.35 0.65 16 48 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 387.35 15.07 5.84 5.84 Total: -1.00 -35.60 387.35 -5.91 -41.51 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -7.54 Total: 0.25 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -0.73 Total: 3.69 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: 1.02 Total: -54.44 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.22 Total: -14.69 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.29 Total: 17.84 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.60 -5.91 -41.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150842854.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.707 kcal (2) G-P(sol) polarization free energy of solvation -35.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds