Wall clock time and date at job start Tue Mar 31 2020 21:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46512 * 1 3 3 C 1.35312 * 125.86617 * 2 1 4 4 C 1.35346 * 106.17358 * 179.90726 * 3 2 1 5 5 C 1.50698 * 126.75398 * 180.12976 * 4 3 2 6 6 C 1.52995 * 109.47611 * 125.24656 * 5 4 3 7 7 C 1.50698 * 109.47611 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99521 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00149 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99911 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47067 * 180.02562 * 10 9 7 12 12 H 1.09001 * 108.57702 * 59.99420 * 11 10 9 13 13 C 1.46920 * 108.62159 * 177.93950 * 11 10 9 14 14 N 1.50116 * 106.77869 * 177.91644 * 13 11 10 15 15 C 1.36936 * 120.63315 * 111.33403 * 14 13 11 16 16 H 1.08003 * 119.99688 * 320.49745 * 15 14 13 17 17 C 1.38808 * 120.00419 * 140.50931 * 15 14 13 18 18 N 1.31612 * 120.00646 * 156.58232 * 17 15 14 19 19 Si 1.86803 * 119.99589 * 336.58444 * 17 15 14 20 20 H 1.48496 * 109.47551 * 95.55407 * 19 17 15 21 21 H 1.48504 * 109.47215 * 215.55873 * 19 17 15 22 22 H 1.48498 * 109.47379 * 335.55212 * 19 17 15 23 23 C 1.43417 * 118.72828 * 291.35117 * 14 13 11 24 24 C 1.55330 * 116.23988 * 89.35420 * 23 14 13 25 25 C 1.55182 * 108.87412 * 319.46361 * 24 23 14 26 26 O 1.39811 * 110.45483 * 322.14020 * 25 24 23 27 27 N 1.33773 * 106.49487 * 0.35277 * 4 3 2 28 28 N 1.28634 * 108.88902 * 359.77545 * 27 4 3 29 29 H 1.09000 * 109.46315 * 269.71084 * 1 2 3 30 30 H 1.09000 * 109.47204 * 149.71211 * 1 2 3 31 31 H 1.08997 * 109.46831 * 29.71234 * 1 2 3 32 32 H 1.07998 * 126.91556 * 0.02562 * 3 2 1 33 33 H 1.09003 * 109.47058 * 245.24629 * 5 4 3 34 34 H 1.08997 * 109.47230 * 5.24256 * 5 4 3 35 35 H 1.09003 * 109.46887 * 300.00077 * 6 5 4 36 36 H 1.08997 * 109.47150 * 59.99551 * 6 5 4 37 37 H 0.96995 * 120.00142 * 0.02562 * 9 7 6 38 38 H 1.09004 * 109.46385 * 299.99628 * 10 9 7 39 39 H 1.08990 * 109.47232 * 59.99311 * 10 9 7 40 40 H 1.08994 * 109.98973 * 297.23642 * 13 11 10 41 41 H 1.09005 * 109.99006 * 58.50589 * 13 11 10 42 42 H 0.96997 * 120.00554 * 179.97438 * 18 17 15 43 43 H 1.09006 * 108.12569 * 211.11043 * 23 14 13 44 44 H 1.09003 * 108.13227 * 327.59244 * 23 14 13 45 45 H 1.09001 * 109.57000 * 79.27873 * 24 23 14 46 46 H 1.09006 * 109.56798 * 199.64081 * 24 23 14 47 47 H 1.08998 * 109.26273 * 82.42205 * 25 24 23 48 48 H 1.09005 * 109.25772 * 201.86749 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2579 1.0966 0.0000 4 6 3.5322 0.6405 0.0021 5 6 4.7881 1.4734 0.0057 6 6 5.6708 1.0602 1.1850 7 6 6.9270 1.8927 1.1883 8 8 7.0990 2.7341 0.3318 9 7 7.8587 1.7030 2.1434 10 6 9.0796 2.5128 2.1468 11 6 9.9624 2.0995 3.3260 12 1 10.2163 1.0451 3.2169 13 6 11.2017 2.8873 3.2830 14 7 12.0112 2.4875 4.4824 15 6 13.1776 1.7855 4.3345 16 1 13.2461 1.0021 3.5942 17 6 14.2717 2.0805 5.1362 18 7 15.2003 1.1710 5.3432 19 14 14.4261 3.7684 5.9214 20 1 13.8879 3.7221 7.3047 21 1 15.8559 4.1677 5.9596 22 1 13.6572 4.7575 5.1241 23 6 11.5393 2.8546 5.7860 24 6 10.5914 1.8410 6.4838 25 6 9.6053 1.2690 5.4309 26 8 9.2203 2.2661 4.5297 27 7 3.4576 -0.6952 -0.0046 28 7 2.2192 -1.0431 -0.0057 29 1 -0.3632 -0.0052 1.0277 30 1 -0.3633 -0.8874 -0.5183 31 1 -0.3633 0.8925 -0.5094 32 1 1.9382 2.1281 0.0004 33 1 5.3306 1.3167 -0.9266 34 1 4.5251 2.5269 0.1003 35 1 5.1283 1.2169 2.1174 36 1 5.9338 0.0067 1.0904 37 1 7.7209 1.0304 2.8285 38 1 9.6223 2.3557 1.2146 39 1 8.8166 3.5663 2.2409 40 1 11.7535 2.6643 2.3699 41 1 10.9687 3.9513 3.3268 42 1 15.9650 1.3773 5.9031 43 1 12.4057 3.0072 6.4297 44 1 11.0149 3.8064 5.7014 45 1 11.1779 1.0290 6.9138 46 1 10.0322 2.3466 7.2712 47 1 10.0906 0.4589 4.8866 48 1 8.7220 0.8816 5.9388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150842854.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:20 Heat of formation + Delta-G solvation = 21.363248 kcal Electronic energy + Delta-G solvation = -28883.371586 eV Core-core repulsion = 24782.825504 eV Total energy + Delta-G solvation = -4100.546082 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.18777 -41.15504 -40.28287 -37.04833 -36.21063 -35.85128 -34.41228 -33.85524 -33.53401 -31.33953 -30.38429 -28.71018 -27.62122 -27.18689 -25.68620 -23.93417 -22.99787 -22.52263 -22.02003 -21.79392 -21.00693 -18.85117 -18.35395 -17.92818 -17.53055 -17.46870 -17.42451 -17.11496 -16.58915 -16.09713 -15.84099 -15.70415 -15.66718 -15.04008 -14.92985 -14.68581 -14.30774 -14.18093 -14.03549 -13.97186 -13.76992 -13.65644 -13.47039 -13.13957 -13.08739 -12.75758 -12.63052 -12.56018 -12.33122 -12.25235 -12.01926 -11.73870 -11.63096 -11.60973 -11.31828 -11.00633 -10.89468 -10.59589 -10.42527 -10.10546 -10.02403 -8.74771 -8.23518 -5.63836 0.67648 1.29705 1.39718 1.49890 1.51046 1.61431 1.71631 2.27207 2.40369 2.93932 3.03238 3.22604 3.39638 3.75758 3.86202 3.99080 4.04042 4.08264 4.19714 4.22682 4.27782 4.29326 4.36748 4.40813 4.45014 4.59085 4.60840 4.66378 4.67659 4.69593 4.73968 4.81384 4.85895 4.99289 5.06479 5.08932 5.13036 5.16806 5.17761 5.27599 5.28310 5.48501 5.72100 5.92930 6.13886 6.29994 6.60575 6.96612 7.30017 7.53221 7.58634 8.06500 8.95495 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.029465 B = 0.001869 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.045679 B =14975.825278 C =15218.076781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.289 5.289 3 C -0.031 4.031 4 C -0.038 4.038 5 C -0.009 4.009 6 C -0.123 4.123 7 C 0.514 3.486 8 O -0.583 6.583 9 N -0.714 5.714 10 C 0.127 3.873 11 C 0.073 3.927 12 H 0.065 0.935 13 C 0.111 3.889 14 N -0.610 5.610 15 C -0.258 4.258 16 H 0.045 0.955 17 C -0.010 4.010 18 N -0.941 5.941 19 Si 0.939 3.061 20 H -0.279 1.279 21 H -0.307 1.307 22 H -0.264 1.264 23 C 0.144 3.856 24 C -0.166 4.166 25 C 0.069 3.931 26 O -0.353 6.353 27 N -0.304 5.304 28 N -0.126 5.126 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.131 0.869 32 H 0.233 0.767 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.412 0.588 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.053 0.947 42 H 0.263 0.737 43 H 0.018 0.982 44 H 0.043 0.957 45 H 0.050 0.950 46 H 0.080 0.920 47 H 0.047 0.953 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.723 1.696 -7.356 33.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.083 5.083 3 C -0.183 4.183 4 C -0.177 4.177 5 C -0.049 4.049 6 C -0.163 4.163 7 C 0.302 3.698 8 O -0.464 6.464 9 N -0.366 5.366 10 C 0.002 3.998 11 C 0.014 3.986 12 H 0.083 0.917 13 C -0.013 4.013 14 N -0.334 5.334 15 C -0.388 4.388 16 H 0.063 0.937 17 C -0.208 4.208 18 N -0.584 5.584 19 Si 0.768 3.232 20 H -0.206 1.206 21 H -0.235 1.235 22 H -0.189 1.189 23 C 0.017 3.983 24 C -0.207 4.207 25 C -0.009 4.009 26 O -0.271 6.271 27 N -0.170 5.170 28 N -0.105 5.105 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.149 0.851 32 H 0.249 0.751 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.129 0.871 36 H 0.119 0.881 37 H 0.248 0.752 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.036 0.964 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.099 0.901 47 H 0.065 0.935 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -32.598 0.842 -7.875 33.547 hybrid contribution 1.023 1.070 0.888 1.726 sum -31.575 1.912 -6.988 32.396 Atomic orbital electron populations 1.22739 0.69843 1.07741 1.06674 1.47673 1.11029 1.04306 1.45280 1.24036 0.89856 0.96236 1.08173 1.22231 0.96616 0.90923 1.07921 1.19512 0.89134 0.97986 0.98224 1.21524 0.92614 1.00573 1.01606 1.21076 0.85226 0.83311 0.80190 1.90682 1.79734 1.36971 1.38968 1.45859 1.19683 1.40203 1.30846 1.21435 0.85330 0.95962 0.97081 1.21711 0.91643 1.00351 0.84920 0.91726 1.21198 0.91339 0.97803 0.90974 1.44185 1.23012 1.65398 1.00766 1.18589 0.88850 1.10853 1.20464 0.93721 1.26062 0.95396 0.99717 0.99595 1.69986 1.13633 1.34249 1.40500 0.85910 0.75383 0.83415 0.78496 1.20586 1.23498 1.18885 1.20711 0.95057 0.96071 0.86431 1.23454 0.98029 1.00168 0.99063 1.22479 0.97513 0.89558 0.91320 1.87644 1.60628 1.53815 1.25050 1.74991 1.10377 1.13711 1.17949 1.78240 0.96669 1.13767 1.21870 0.87425 0.87758 0.85068 0.75083 0.90889 0.88078 0.87069 0.88079 0.75201 0.90396 0.91319 0.90142 0.92871 0.92741 0.96424 0.93893 0.93133 0.90104 0.93474 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.06 11.39 127.76 1.46 1.51 16 2 N -0.29 -3.52 3.74 -369.21 -1.38 -4.90 16 3 C -0.03 -0.34 11.54 83.49 0.96 0.62 16 4 C -0.04 -0.67 6.50 41.59 0.27 -0.40 16 5 C -0.01 -0.15 5.08 29.85 0.15 0.00 16 6 C -0.12 -2.11 5.68 29.85 0.17 -1.94 16 7 C 0.51 12.02 7.83 87.66 0.69 12.71 16 8 O -0.58 -17.84 15.98 -3.03 -0.05 -17.89 16 9 N -0.71 -16.10 5.41 -463.08 -2.51 -18.60 16 10 C 0.13 3.34 5.25 86.38 0.45 3.80 16 11 C 0.07 2.21 2.13 28.70 0.06 2.27 16 12 H 0.06 2.05 6.76 -2.39 -0.02 2.03 16 13 C 0.11 4.05 5.58 83.79 0.47 4.52 16 14 N -0.61 -27.66 2.16 -706.00 -1.52 -29.18 16 15 C -0.26 -14.13 9.93 84.03 0.83 -13.30 16 16 H 0.05 2.69 8.06 -2.91 -0.02 2.66 16 17 C -0.01 -0.58 5.27 84.86 0.45 -0.13 16 18 N -0.94 -57.67 13.97 21.65 0.30 -57.37 16 19 Si 0.94 46.30 25.24 68.60 1.73 48.03 16 20 H -0.28 -13.27 6.74 99.48 0.67 -12.60 16 21 H -0.31 -15.26 7.11 99.48 0.71 -14.55 16 22 H -0.26 -12.66 7.11 99.48 0.71 -11.96 16 23 C 0.14 6.07 4.29 87.75 0.38 6.45 16 24 C -0.17 -5.78 6.75 32.14 0.22 -5.57 16 25 C 0.07 2.03 6.38 72.73 0.46 2.49 16 26 O -0.35 -10.55 9.44 -138.92 -1.31 -11.86 16 27 N -0.30 -7.28 12.40 -48.60 -0.60 -7.89 16 28 N -0.13 -2.71 13.17 37.02 0.49 -2.22 16 29 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.13 -0.72 8.14 -2.39 -0.02 -0.74 16 32 H 0.23 0.31 8.06 -2.91 -0.02 0.29 16 33 H 0.07 1.47 8.10 -2.39 -0.02 1.45 16 34 H 0.10 1.43 8.08 -2.39 -0.02 1.41 16 35 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.41 7.76 8.26 -92.71 -0.77 7.00 16 38 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.08 2.93 8.00 -2.39 -0.02 2.91 16 41 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 42 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 43 H 0.02 0.83 3.45 -2.38 -0.01 0.82 16 44 H 0.04 1.70 7.99 -2.39 -0.02 1.68 16 45 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 47 H 0.05 1.51 6.66 -2.39 -0.02 1.50 16 48 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 Total: -1.00 -79.36 387.35 2.34 -77.03 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.17 Total: 11.81 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 7.02 Total: 13.04 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -5.22 Total: -120.16 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -1.36 Total: -29.74 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.73 Total: 48.03 kcal Total: -79.36 2.34 -77.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150842854.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.392 kcal (2) G-P(sol) polarization free energy of solvation -79.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds