Wall clock time and date at job start Tue Mar 31 2020 20:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47485 * 2 1 4 4 C 1.46491 * 119.99932 * 270.00122 * 3 2 1 5 5 C 1.50699 * 109.47103 * 269.99410 * 4 3 2 6 6 H 1.07997 * 120.00101 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99973 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00269 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99855 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47056 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46928 * 120.00165 * 9 7 5 12 12 H 1.48496 * 109.46726 * 240.00026 * 9 7 5 13 13 C 1.34780 * 119.99755 * 89.99716 * 3 2 1 14 14 O 1.21279 * 119.99747 * 180.02562 * 13 3 2 15 15 C 1.50695 * 119.99893 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.47008 * 179.97438 * 15 13 3 17 17 C 1.46896 * 111.00245 * 180.02562 * 16 15 13 18 18 C 1.53002 * 109.47243 * 179.97438 * 17 16 15 19 19 N 1.46506 * 109.47035 * 179.97438 * 18 17 16 20 20 C 1.34777 * 119.99873 * 179.97438 * 19 18 17 21 21 O 1.21579 * 119.99978 * 0.02562 * 20 19 18 22 22 C 1.47706 * 120.00116 * 179.97438 * 20 19 18 23 23 C 1.41507 * 126.51940 * 179.71180 * 22 20 19 24 24 C 1.35365 * 105.49956 * 179.84587 * 23 22 20 25 25 N 1.35034 * 107.23100 * 0.42237 * 24 23 22 26 26 C 1.46500 * 124.88523 * 179.72559 * 25 24 23 27 27 N 1.28463 * 110.23066 * 359.72043 * 25 24 23 28 28 H 1.08998 * 109.47166 * 300.00181 * 1 2 3 29 29 H 1.09004 * 109.46611 * 60.00034 * 1 2 3 30 30 H 1.09000 * 109.47071 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47166 * 239.99819 * 2 1 3 32 32 H 1.09004 * 109.46611 * 119.99966 * 2 1 3 33 33 H 1.09002 * 109.47562 * 29.99623 * 4 3 2 34 34 H 1.09006 * 109.47281 * 149.99944 * 4 3 2 35 35 H 0.96997 * 120.00261 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.47659 * 60.00059 * 15 13 3 37 37 H 1.09000 * 109.47620 * 299.99932 * 15 13 3 38 38 H 1.00901 * 110.99921 * 303.95578 * 16 15 13 39 39 H 1.09004 * 109.47041 * 60.00071 * 17 16 15 40 40 H 1.09004 * 109.47535 * 300.00110 * 17 16 15 41 41 H 1.09004 * 109.46930 * 60.00143 * 18 17 16 42 42 H 1.09000 * 109.47312 * 300.00087 * 18 17 16 43 43 H 0.96999 * 120.00080 * 0.02562 * 19 18 17 44 44 H 1.07999 * 127.24480 * 0.02562 * 23 22 20 45 45 H 1.08005 * 126.38078 * 180.13801 * 24 23 22 46 46 H 1.09000 * 109.46826 * 269.97238 * 26 25 24 47 47 H 1.09008 * 109.47001 * 29.96598 * 26 25 24 48 48 H 1.08997 * 109.47603 * 149.96966 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6859 1.8349 -1.7036 6 1 4.3427 1.2302 -1.0961 7 6 4.1492 2.3895 -2.8779 8 7 3.3493 3.1256 -3.6181 9 14 5.9133 2.0954 -3.4174 10 1 6.6006 1.2395 -2.4174 11 1 5.9203 1.4162 -4.7379 12 1 6.6210 3.3964 -3.5261 13 6 2.2430 2.0165 1.1673 14 8 2.6469 3.1601 1.1673 15 6 1.9923 1.3059 2.4723 16 7 2.3110 2.2057 3.5889 17 6 2.0786 1.5451 4.8802 18 6 2.4213 2.5110 6.0162 19 7 2.1889 1.8523 7.3040 20 6 2.4252 2.5163 8.4529 21 8 2.8309 3.6620 8.4204 22 6 2.1904 1.8525 9.7513 23 6 2.3966 2.4141 11.0337 24 6 2.0473 1.4460 11.9130 25 7 1.6656 0.3698 11.1922 26 6 1.2149 -0.9027 11.7613 27 7 1.7546 0.6223 9.9358 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.5818 1.6877 -2.0284 34 1 2.0957 3.1410 -1.1383 35 1 3.6753 3.5160 -4.4439 36 1 2.6228 0.4186 2.5299 37 1 0.9444 1.0114 2.5302 38 1 3.2593 2.5438 3.5215 39 1 2.7097 0.6594 4.9540 40 1 1.0313 1.2522 4.9553 41 1 1.7905 3.3969 5.9426 42 1 3.4686 2.8034 5.9410 43 1 1.8656 0.9382 7.3299 44 1 2.7543 3.4071 11.2625 45 1 2.0737 1.5192 12.9902 46 1 2.0717 -1.5617 11.9016 47 1 0.7350 -0.7209 12.7230 48 1 0.5027 -1.3722 11.0828 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151083939.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:06 Heat of formation + Delta-G solvation = 16.866011 kcal Electronic energy + Delta-G solvation = -27791.021677 eV Core-core repulsion = 23690.280581 eV Total energy + Delta-G solvation = -4100.741096 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.03693 -39.59538 -39.08576 -36.51209 -35.23328 -34.33837 -33.87827 -32.76342 -31.22930 -30.12567 -29.79216 -28.06558 -27.15708 -25.29841 -23.41190 -22.98881 -22.18525 -22.05593 -21.89040 -20.24947 -18.52090 -18.15945 -16.93039 -16.75516 -16.50926 -16.32527 -16.22497 -16.08102 -15.44923 -15.20260 -14.56981 -14.37642 -14.22249 -14.11183 -13.80670 -13.52272 -13.37154 -13.32625 -13.21534 -13.09689 -13.07898 -12.40036 -12.16616 -11.96861 -11.72932 -11.55898 -11.41531 -11.35038 -11.15846 -10.87452 -10.71990 -10.52348 -10.39164 -10.10956 -9.71166 -9.59219 -9.50648 -9.22477 -8.90906 -8.41605 -8.37542 -7.62197 -6.02059 -4.06753 1.21763 1.74628 1.98763 2.84957 3.18695 3.30995 3.38386 3.41351 3.48332 3.79673 3.89695 4.33200 4.38093 4.45110 4.47240 4.51111 4.72166 4.75495 4.89419 4.96700 5.12136 5.25842 5.28110 5.29265 5.32568 5.37308 5.47337 5.52205 5.66962 5.75324 5.80807 5.84585 5.97385 6.03272 6.17783 6.24512 6.28173 6.49574 6.80711 7.13510 7.18776 7.35819 7.49519 7.50920 7.59096 7.94806 7.99485 8.26373 8.46706 8.93379 9.14998 9.58427 11.05955 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019726 B = 0.001665 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.127272 B =16812.116946 C =17462.113218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.504 3.496 14 O -0.527 6.527 15 C 0.043 3.957 16 N -0.669 5.669 17 C 0.051 3.949 18 C 0.119 3.881 19 N -0.716 5.716 20 C 0.604 3.396 21 O -0.528 6.528 22 C -0.016 4.016 23 C -0.177 4.177 24 C -0.020 4.020 25 N -0.285 5.285 26 C 0.086 3.914 27 N -0.263 5.263 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.044 0.956 35 H 0.262 0.738 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.355 0.645 39 H 0.035 0.965 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.405 0.595 44 H 0.164 0.836 45 H 0.183 0.817 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.225 -12.841 31.399 34.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.127 3.873 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.289 3.711 14 O -0.403 6.403 15 C -0.089 4.089 16 N -0.302 5.302 17 C -0.079 4.079 18 C -0.004 4.004 19 N -0.369 5.369 20 C 0.388 3.612 21 O -0.402 6.402 22 C -0.176 4.176 23 C -0.205 4.205 24 C -0.162 4.162 25 N -0.074 5.074 26 C -0.054 4.054 27 N -0.100 5.100 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.175 0.825 39 H 0.053 0.947 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.240 0.760 44 H 0.181 0.819 45 H 0.200 0.800 46 H 0.104 0.896 47 H 0.115 0.885 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.706 -12.039 30.620 33.792 hybrid contribution 1.731 -0.746 0.158 1.891 sum -5.975 -12.785 30.778 33.859 Atomic orbital electron populations 1.22228 0.96812 1.01319 1.02427 1.21403 0.93509 0.84326 1.02530 1.48245 1.64060 1.13180 1.07694 1.19259 0.96169 0.93723 0.78100 1.21475 0.96981 1.31796 1.06197 0.92505 1.24939 0.97810 0.94961 0.96434 1.69940 1.35559 1.33474 1.14322 0.86451 0.84707 0.78044 0.78247 1.19884 1.21016 1.20864 1.20143 0.78992 0.87100 0.84853 1.90686 1.45042 1.17667 1.86895 1.21899 1.02386 0.94239 0.90418 1.59971 1.33112 1.37553 0.99611 1.22067 1.01761 0.95070 0.89038 1.21318 1.02437 0.96263 0.80401 1.45721 1.67832 1.17860 1.05442 1.16834 0.77507 0.85094 0.81744 1.90833 1.45723 1.16860 1.86820 1.21952 1.08365 0.91958 0.95351 1.21826 1.06886 1.01515 0.90313 1.22893 1.05923 0.87829 0.99589 1.45412 1.46183 1.12682 1.03096 1.22204 1.01845 0.81489 0.99911 1.73485 1.19140 1.17489 0.99892 0.93015 0.91993 0.92262 0.89991 0.91958 0.95055 0.93838 0.92790 0.92823 0.88660 0.82484 0.94658 0.90296 0.89847 0.90989 0.75986 0.81866 0.79958 0.89594 0.88508 0.88422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.11 1.67 5.93 -4.04 -0.02 1.65 16 3 N -0.60 -12.56 2.46 -175.06 -0.43 -12.99 16 4 C 0.25 6.48 5.16 -5.20 -0.03 6.46 16 5 C -0.53 -14.98 9.39 -34.44 -0.32 -15.31 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 9 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.50 10.44 7.71 -10.99 -0.08 10.36 16 14 O -0.53 -13.42 15.78 5.56 0.09 -13.34 16 15 C 0.04 0.63 4.72 -4.98 -0.02 0.61 16 16 N -0.67 -9.49 6.13 -115.06 -0.70 -10.19 16 17 C 0.05 0.52 5.80 -3.83 -0.02 0.50 16 18 C 0.12 1.34 5.93 -4.04 -0.02 1.31 16 19 N -0.72 -7.44 5.55 -61.29 -0.34 -7.78 16 20 C 0.60 7.62 7.82 -12.39 -0.10 7.52 16 21 O -0.53 -8.43 16.93 5.30 0.09 -8.34 16 22 C -0.02 -0.17 7.13 -82.76 -0.59 -0.76 16 23 C -0.18 -1.57 10.81 -39.36 -0.43 -2.00 16 24 C -0.02 -0.12 11.46 -17.17 -0.20 -0.31 16 25 N -0.29 -1.81 3.70 -68.12 -0.25 -2.06 16 26 C 0.09 0.13 11.31 59.85 0.68 0.81 16 27 N -0.26 -2.43 11.67 33.42 0.39 -2.04 16 28 H 0.05 0.65 7.22 -51.93 -0.38 0.27 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.34 8.07 -51.93 -0.42 0.93 16 32 H 0.06 0.80 6.44 -51.93 -0.33 0.46 16 33 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 34 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.05 0.69 7.40 -51.93 -0.38 0.30 16 37 H 0.10 1.21 7.19 -51.93 -0.37 0.84 16 38 H 0.36 5.37 8.43 -39.29 -0.33 5.04 16 39 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.41 3.39 8.20 -40.82 -0.33 3.05 16 44 H 0.16 1.32 8.06 -52.49 -0.42 0.89 16 45 H 0.18 0.33 8.06 -52.48 -0.42 -0.09 16 46 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 47 H 0.10 -0.09 8.13 -51.92 -0.42 -0.52 16 48 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 LS Contribution 409.17 15.07 6.17 6.17 Total: -1.00 -38.38 409.17 -7.71 -46.09 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.55 Total: 2.90 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: -0.88 Total: 10.63 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -0.60 Total: -61.12 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: 0.18 Total: -21.68 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -38.38 -7.71 -46.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151083939.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.953 kcal (2) G-P(sol) polarization free energy of solvation -38.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds