Wall clock time and date at job start Tue Mar 31 2020 20:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47485 * 2 1 4 4 C 1.46491 * 119.99932 * 270.00122 * 3 2 1 5 5 C 1.50699 * 109.47103 * 269.99410 * 4 3 2 6 6 H 1.07997 * 120.00101 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99973 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00269 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99855 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47056 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46928 * 120.00165 * 9 7 5 12 12 H 1.48496 * 109.46726 * 240.00026 * 9 7 5 13 13 C 1.34780 * 119.99755 * 89.99716 * 3 2 1 14 14 O 1.21279 * 119.99747 * 180.02562 * 13 3 2 15 15 C 1.50695 * 119.99893 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.47008 * 179.97438 * 15 13 3 17 17 C 1.46896 * 111.00245 * 180.02562 * 16 15 13 18 18 C 1.53002 * 109.47243 * 179.97438 * 17 16 15 19 19 N 1.46506 * 109.47035 * 179.97438 * 18 17 16 20 20 C 1.34777 * 119.99873 * 179.97438 * 19 18 17 21 21 O 1.21579 * 119.99978 * 0.02562 * 20 19 18 22 22 C 1.47706 * 120.00116 * 179.97438 * 20 19 18 23 23 C 1.41507 * 126.51940 * 179.71180 * 22 20 19 24 24 C 1.35365 * 105.49956 * 179.84587 * 23 22 20 25 25 N 1.35034 * 107.23100 * 0.42237 * 24 23 22 26 26 C 1.46500 * 124.88523 * 179.72559 * 25 24 23 27 27 N 1.28463 * 110.23066 * 359.72043 * 25 24 23 28 28 H 1.08998 * 109.47166 * 300.00181 * 1 2 3 29 29 H 1.09004 * 109.46611 * 60.00034 * 1 2 3 30 30 H 1.09000 * 109.47071 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47166 * 239.99819 * 2 1 3 32 32 H 1.09004 * 109.46611 * 119.99966 * 2 1 3 33 33 H 1.09002 * 109.47562 * 29.99623 * 4 3 2 34 34 H 1.09006 * 109.47281 * 149.99944 * 4 3 2 35 35 H 0.96997 * 120.00261 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.47659 * 60.00059 * 15 13 3 37 37 H 1.09000 * 109.47620 * 299.99932 * 15 13 3 38 38 H 1.00901 * 110.99921 * 303.95578 * 16 15 13 39 39 H 1.09004 * 109.47041 * 60.00071 * 17 16 15 40 40 H 1.09004 * 109.47535 * 300.00110 * 17 16 15 41 41 H 1.09004 * 109.46930 * 60.00143 * 18 17 16 42 42 H 1.09000 * 109.47312 * 300.00087 * 18 17 16 43 43 H 0.96999 * 120.00080 * 0.02562 * 19 18 17 44 44 H 1.07999 * 127.24480 * 0.02562 * 23 22 20 45 45 H 1.08005 * 126.38078 * 180.13801 * 24 23 22 46 46 H 1.09000 * 109.46826 * 269.97238 * 26 25 24 47 47 H 1.09008 * 109.47001 * 29.96598 * 26 25 24 48 48 H 1.08997 * 109.47603 * 149.96966 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6859 1.8349 -1.7036 6 1 4.3427 1.2302 -1.0961 7 6 4.1492 2.3895 -2.8779 8 7 3.3493 3.1256 -3.6181 9 14 5.9133 2.0954 -3.4174 10 1 6.6006 1.2395 -2.4174 11 1 5.9203 1.4162 -4.7379 12 1 6.6210 3.3964 -3.5261 13 6 2.2430 2.0165 1.1673 14 8 2.6469 3.1601 1.1673 15 6 1.9923 1.3059 2.4723 16 7 2.3110 2.2057 3.5889 17 6 2.0786 1.5451 4.8802 18 6 2.4213 2.5110 6.0162 19 7 2.1889 1.8523 7.3040 20 6 2.4252 2.5163 8.4529 21 8 2.8309 3.6620 8.4204 22 6 2.1904 1.8525 9.7513 23 6 2.3966 2.4141 11.0337 24 6 2.0473 1.4460 11.9130 25 7 1.6656 0.3698 11.1922 26 6 1.2149 -0.9027 11.7613 27 7 1.7546 0.6223 9.9358 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.5818 1.6877 -2.0284 34 1 2.0957 3.1410 -1.1383 35 1 3.6753 3.5160 -4.4439 36 1 2.6228 0.4186 2.5299 37 1 0.9444 1.0114 2.5302 38 1 3.2593 2.5438 3.5215 39 1 2.7097 0.6594 4.9540 40 1 1.0313 1.2522 4.9553 41 1 1.7905 3.3969 5.9426 42 1 3.4686 2.8034 5.9410 43 1 1.8656 0.9382 7.3299 44 1 2.7543 3.4071 11.2625 45 1 2.0737 1.5192 12.9902 46 1 2.0717 -1.5617 11.9016 47 1 0.7350 -0.7209 12.7230 48 1 0.5027 -1.3722 11.0828 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151083939.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:04 Heat of formation + Delta-G solvation = -14.258015 kcal Electronic energy + Delta-G solvation = -27792.371316 eV Core-core repulsion = 23690.280581 eV Total energy + Delta-G solvation = -4102.090735 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.58941 -40.75313 -40.47857 -37.61082 -36.84699 -35.42248 -34.85651 -34.34336 -31.84910 -31.61612 -30.82857 -29.26940 -28.21630 -26.63285 -24.72779 -24.18508 -23.59085 -22.98899 -22.42097 -21.03606 -19.96661 -18.90818 -18.60863 -17.90581 -17.50394 -17.44303 -17.30007 -17.08817 -16.86875 -16.31524 -16.23773 -15.41241 -15.29887 -14.93621 -14.75321 -14.62828 -14.56370 -14.51594 -14.13495 -13.97184 -13.55978 -13.49731 -13.43285 -13.32980 -13.21903 -13.04097 -12.67151 -12.66286 -12.48786 -12.42219 -12.14309 -11.98031 -11.84678 -11.67750 -11.40111 -10.64931 -10.56563 -10.37550 -10.16663 -9.96523 -9.45217 -9.39045 -8.21909 -6.36947 0.49290 1.19755 1.35581 1.38506 1.49887 1.58446 1.88442 1.99292 2.32038 2.32783 2.45780 3.07344 3.25949 3.41902 3.72795 3.82410 4.00042 4.05729 4.09335 4.13977 4.35153 4.39968 4.44072 4.46650 4.48558 4.52173 4.69234 4.73586 4.75979 4.77834 4.87618 4.90694 4.96266 5.02010 5.07647 5.23428 5.26176 5.34818 5.42334 5.59328 5.82211 5.88929 5.92890 6.07643 6.22883 6.38089 6.71857 6.85311 6.88300 7.11723 7.29500 7.54291 8.85193 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019726 B = 0.001665 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.127272 B =16812.116946 C =17462.113218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.262 3.738 5 C -0.541 4.541 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.969 3.031 10 H -0.266 1.266 11 H -0.269 1.269 12 H -0.283 1.283 13 C 0.491 3.509 14 O -0.588 6.588 15 C 0.061 3.939 16 N -0.691 5.691 17 C 0.062 3.938 18 C 0.125 3.875 19 N -0.702 5.702 20 C 0.599 3.401 21 O -0.575 6.575 22 C -0.049 4.049 23 C -0.208 4.208 24 C 0.002 3.998 25 N -0.279 5.279 26 C 0.074 3.926 27 N -0.273 5.273 28 H 0.061 0.939 29 H 0.035 0.965 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.021 0.979 34 H -0.007 1.007 35 H 0.266 0.734 36 H 0.085 0.915 37 H 0.125 0.875 38 H 0.346 0.654 39 H 0.059 0.941 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.417 0.583 44 H 0.160 0.840 45 H 0.228 0.772 46 H 0.100 0.900 47 H 0.129 0.871 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.518 -16.652 34.070 38.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.141 3.859 5 C -0.580 4.580 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.190 1.190 11 H -0.194 1.194 12 H -0.209 1.209 13 C 0.280 3.720 14 O -0.468 6.468 15 C -0.071 4.071 16 N -0.324 5.324 17 C -0.067 4.067 18 C 0.000 4.000 19 N -0.354 5.354 20 C 0.385 3.615 21 O -0.453 6.453 22 C -0.207 4.207 23 C -0.236 4.236 24 C -0.141 4.141 25 N -0.068 5.068 26 C -0.064 4.064 27 N -0.112 5.112 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.115 0.885 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.039 0.961 34 H 0.011 0.989 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.143 0.857 38 H 0.165 0.835 39 H 0.077 0.923 40 H 0.116 0.884 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.255 0.745 44 H 0.177 0.823 45 H 0.244 0.756 46 H 0.119 0.881 47 H 0.147 0.853 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.049 -15.957 33.304 37.796 hybrid contribution 1.745 0.373 -0.573 1.874 sum -6.304 -15.584 32.731 36.795 Atomic orbital electron populations 1.22162 0.94651 1.03486 1.01658 1.21763 0.95261 0.81254 1.04005 1.48275 1.64097 1.15148 1.06107 1.18673 0.95239 0.91452 0.80582 1.21757 0.97913 1.31866 1.06453 0.92739 1.25887 1.02429 0.94522 0.96507 1.70064 1.37715 1.34282 1.14816 0.85349 0.78968 0.77944 0.78414 1.19009 1.19389 1.20940 1.21318 0.77401 0.86676 0.86615 1.90652 1.47689 1.20575 1.87925 1.21813 1.04664 0.93958 0.86638 1.59944 1.32740 1.38687 1.01035 1.22032 1.03328 0.94873 0.86451 1.21166 1.01258 0.96199 0.81339 1.45575 1.67030 1.18166 1.04654 1.17217 0.76701 0.84689 0.82899 1.90792 1.48035 1.18863 1.87593 1.21782 1.10848 0.93144 0.94971 1.22035 1.08594 1.02534 0.90487 1.23476 1.03169 0.86388 1.01083 1.45944 1.44428 1.14050 1.02336 1.22662 1.02791 0.79754 1.01198 1.73415 1.19422 1.16636 1.01712 0.92007 0.94589 0.88524 0.91096 0.87867 0.96116 0.98852 0.92468 0.89733 0.85712 0.83526 0.92290 0.88386 0.91874 0.92262 0.74549 0.82273 0.75564 0.88110 0.85269 0.88109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 10.24 71.98 0.74 -3.12 16 2 C 0.10 2.92 5.93 86.38 0.51 3.43 16 3 N -0.60 -25.57 2.46 -826.17 -2.03 -27.60 16 4 C 0.26 14.45 5.16 85.63 0.44 14.89 16 5 C -0.54 -31.70 9.39 25.60 0.24 -31.46 16 6 H 0.05 3.14 7.81 -2.91 -0.02 3.11 16 7 C 0.01 0.31 5.46 84.66 0.46 0.77 16 8 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 9 Si 0.97 45.68 29.54 68.60 2.03 47.70 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 13 C 0.49 20.49 7.71 87.65 0.68 21.16 16 14 O -0.59 -31.37 15.78 -3.03 -0.05 -31.42 16 15 C 0.06 1.63 4.72 85.56 0.40 2.03 16 16 N -0.69 -18.85 6.13 -517.93 -3.17 -22.02 16 17 C 0.06 1.15 5.80 86.30 0.50 1.65 16 18 C 0.12 2.80 5.93 86.38 0.51 3.32 16 19 N -0.70 -14.48 5.55 -466.07 -2.59 -17.07 16 20 C 0.60 15.73 7.82 86.75 0.68 16.41 16 21 O -0.58 -19.64 16.93 -3.96 -0.07 -19.70 16 22 C -0.05 -1.07 7.13 42.46 0.30 -0.77 16 23 C -0.21 -3.63 10.81 22.41 0.24 -3.39 16 24 C 0.00 0.02 11.46 83.54 0.96 0.97 16 25 N -0.28 -2.78 3.70 -369.44 -1.37 -4.15 16 26 C 0.07 -0.04 11.31 127.77 1.44 1.40 16 27 N -0.27 -4.68 11.67 -48.17 -0.56 -5.24 16 28 H 0.06 1.36 7.22 -2.39 -0.02 1.34 16 29 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 32 H 0.10 2.20 6.44 -2.39 -0.02 2.19 16 33 H 0.02 1.16 8.07 -2.39 -0.02 1.15 16 34 H -0.01 -0.43 7.42 -2.38 -0.02 -0.45 16 35 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.09 1.79 7.40 -2.39 -0.02 1.77 16 37 H 0.13 2.64 7.19 -2.39 -0.02 2.62 16 38 H 0.35 10.53 8.43 -89.69 -0.76 9.78 16 39 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.06 1.68 8.14 -2.38 -0.02 1.67 16 42 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.42 6.44 8.20 -92.71 -0.76 5.68 16 44 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 45 H 0.23 -0.19 8.06 -2.91 -0.02 -0.22 16 46 H 0.10 -0.28 8.14 -2.39 -0.02 -0.30 16 47 H 0.13 -0.87 8.13 -2.38 -0.02 -0.89 16 48 H 0.10 -0.07 8.14 -2.39 -0.02 -0.09 16 Total: -1.00 -91.25 409.17 0.06 -91.20 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -0.53 Total: 18.03 kcal Atomic # 6 Polarization: 19.20 SS G_CDS: 8.11 Total: 27.31 kcal Atomic # 7 Polarization: -123.68 SS G_CDS: -9.43 Total: -133.11 kcal Atomic # 8 Polarization: -51.01 SS G_CDS: -0.11 Total: -51.12 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -91.25 0.06 -91.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151083939.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.940 kcal (2) G-P(sol) polarization free energy of solvation -91.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds