Wall clock time and date at job start Tue Mar 31 2020 21:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42908 * 113.99263 * 2 1 4 4 C 1.53007 * 109.46587 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46562 * 183.77996 * 4 3 2 6 6 N 1.46490 * 109.45007 * 305.38253 * 5 4 3 7 7 C 1.34781 * 120.00365 * 300.00309 * 6 5 4 8 8 O 1.21593 * 119.99621 * 4.60632 * 7 6 5 9 9 C 1.47524 * 119.99944 * 184.60183 * 7 6 5 10 10 C 1.36597 * 125.76654 * 179.97438 * 9 7 6 11 11 N 1.34810 * 106.83918 * 179.97438 * 10 9 7 12 12 C 1.46505 * 126.59729 * 179.97438 * 11 10 9 13 13 N 1.40212 * 106.81246 * 0.02562 * 11 10 9 14 14 N 1.28765 * 108.36358 * 359.74125 * 13 11 10 15 15 C 1.53032 * 109.46225 * 65.35360 * 5 4 3 16 16 C 1.53190 * 109.31384 * 181.38336 * 15 5 4 17 17 N 1.46931 * 108.77560 * 305.36047 * 16 15 5 18 18 C 1.36935 * 120.63365 * 233.63036 * 17 16 15 19 19 H 1.08000 * 119.99579 * 38.03268 * 18 17 16 20 20 C 1.38809 * 119.99960 * 218.03178 * 18 17 16 21 21 N 1.31620 * 120.00299 * 3.61054 * 20 18 17 22 22 Si 1.86801 * 119.99966 * 183.60467 * 20 18 17 23 23 H 1.48505 * 109.47022 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47015 * 120.00463 * 22 20 18 25 25 H 1.48504 * 109.46888 * 240.00399 * 22 20 18 26 26 C 1.46923 * 118.73261 * 53.61085 * 17 16 15 27 27 C 1.53043 * 109.45399 * 185.41867 * 5 4 3 28 28 H 1.09000 * 109.47414 * 60.00914 * 1 2 3 29 29 H 1.09003 * 109.46584 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47791 * 299.99751 * 1 2 3 31 31 H 1.08996 * 109.47549 * 59.99905 * 3 2 1 32 32 H 1.09004 * 109.46856 * 299.99505 * 3 2 1 33 33 H 1.08994 * 109.46878 * 63.78156 * 4 3 2 34 34 H 1.08994 * 109.46938 * 303.77955 * 4 3 2 35 35 H 0.97007 * 120.00270 * 120.00239 * 6 5 4 36 36 H 1.08001 * 126.58125 * 359.97438 * 10 9 7 37 37 H 1.08998 * 109.46583 * 90.00031 * 12 11 10 38 38 H 1.09000 * 109.47464 * 210.00140 * 12 11 10 39 39 H 1.08998 * 109.46977 * 330.00901 * 12 11 10 40 40 H 1.09003 * 109.50031 * 301.33511 * 15 5 4 41 41 H 1.09004 * 109.50012 * 61.42915 * 15 5 4 42 42 H 1.09008 * 109.58547 * 185.57673 * 16 15 5 43 43 H 1.08995 * 109.58802 * 65.14843 * 16 15 5 44 44 H 0.97000 * 120.00383 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.58571 * 186.60449 * 26 17 16 46 46 H 1.09003 * 109.59271 * 66.17965 * 26 17 16 47 47 H 1.08992 * 109.49986 * 298.56462 * 27 5 4 48 48 H 1.08995 * 109.49888 * 58.66493 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1572 2.5796 0.0957 6 7 3.6310 3.4227 -0.9805 7 6 3.8196 3.0688 -2.2673 8 8 4.3523 2.0089 -2.5345 9 6 3.3795 3.9673 -3.3514 10 6 3.5117 3.7281 -4.6897 11 7 2.9847 4.7907 -5.3303 12 6 2.9018 4.9836 -6.7803 13 7 2.5322 5.6765 -4.3421 14 7 2.7762 5.1573 -3.1894 15 6 3.8073 3.2026 1.4490 16 6 4.4023 4.6121 1.5268 17 7 5.8439 4.5326 1.2538 18 6 6.7506 5.0644 2.1314 19 1 6.5821 4.9864 3.1953 20 6 7.8862 5.7038 1.6536 21 7 8.0567 5.8616 0.3581 22 14 9.1726 6.3403 2.8493 23 1 8.7477 6.0392 4.2400 24 1 10.4734 5.6786 2.5754 25 1 9.3194 7.8087 2.6829 26 6 6.2939 3.8713 0.0215 27 6 5.6777 2.4700 -0.0395 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3635 0.5138 0.8900 31 1 1.6884 1.8465 0.8899 32 1 1.6884 1.8464 -0.8901 33 1 3.8621 0.7034 -0.9210 34 1 3.8521 0.5868 0.8550 35 1 3.1468 4.2357 -0.7671 36 1 3.9536 2.8551 -5.1470 37 1 1.9627 4.5706 -7.1486 38 1 2.9446 6.0487 -7.0082 39 1 3.7364 4.4749 -7.2627 40 1 2.7239 3.2588 1.5545 41 1 4.2199 2.5888 2.2497 42 1 4.2414 5.0221 2.5239 43 1 3.9247 5.2519 0.7849 44 1 8.8501 6.3087 0.0242 45 1 7.3811 3.7924 0.0252 46 1 5.9705 4.4506 -0.8433 47 1 6.0726 1.8632 0.7752 48 1 5.9256 2.0048 -0.9935 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151115407.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:57 Heat of formation + Delta-G solvation = 42.659456 kcal Electronic energy + Delta-G solvation = -30988.693425 eV Core-core repulsion = 26889.070817 eV Total energy + Delta-G solvation = -4099.622609 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.17667 -40.08899 -37.76013 -37.15024 -34.76227 -34.45015 -32.06761 -31.44849 -30.71560 -30.02863 -28.84403 -27.92251 -26.48490 -24.84267 -23.68902 -23.03081 -22.28152 -21.98658 -20.78879 -20.16023 -18.57029 -18.12637 -16.84410 -16.38285 -16.25877 -16.13778 -15.84551 -15.14050 -14.87590 -14.71007 -14.55029 -14.42615 -13.99372 -13.78742 -13.50015 -13.40462 -13.33818 -13.04757 -12.91730 -12.52153 -12.27244 -12.13635 -11.61961 -11.45680 -11.37124 -11.25905 -10.99515 -10.96276 -10.80871 -10.72131 -10.45495 -10.32147 -10.18496 -9.96962 -9.81669 -9.68116 -9.38667 -9.26337 -9.17085 -8.52731 -8.41596 -6.43992 -5.73701 -3.28691 1.11281 1.83334 1.96703 3.39156 3.40981 3.46727 3.48614 3.61549 3.85183 4.23141 4.26276 4.52075 4.67680 4.75088 4.95218 4.98563 5.12762 5.21974 5.28707 5.30982 5.37651 5.43554 5.43991 5.51978 5.57616 5.60865 5.69596 5.80082 5.88159 6.09000 6.22641 6.24381 6.28483 6.41467 6.47883 6.58286 6.75151 6.76823 6.85621 7.00411 7.10021 7.25333 7.48287 7.77858 7.82238 7.85544 8.05372 8.54592 8.57942 9.29929 9.88441 10.51141 11.33734 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008666 B = 0.004391 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3230.091823 B = 6375.818084 C = 8829.348463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.066 3.934 4 C -0.129 4.129 5 C 0.194 3.806 6 N -0.695 5.695 7 C 0.607 3.393 8 O -0.537 6.537 9 C -0.094 4.094 10 C 0.089 3.911 11 N -0.368 5.368 12 C 0.089 3.911 13 N -0.070 5.070 14 N -0.200 5.200 15 C -0.140 4.140 16 C 0.145 3.855 17 N -0.589 5.589 18 C -0.257 4.257 19 H 0.061 0.939 20 C 0.012 3.988 21 N -0.900 5.900 22 Si 0.901 3.099 23 H -0.277 1.277 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.181 3.819 27 C -0.150 4.150 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.039 0.961 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.406 0.594 36 H 0.204 0.796 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.017 0.983 44 H 0.253 0.747 45 H 0.080 0.920 46 H 0.018 0.982 47 H 0.063 0.937 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.184 -6.931 -11.588 19.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.312 6.312 3 C -0.010 4.010 4 C -0.167 4.167 5 C 0.109 3.891 6 N -0.345 5.345 7 C 0.391 3.609 8 O -0.414 6.414 9 C -0.233 4.233 10 C -0.068 4.068 11 N -0.153 5.153 12 C -0.052 4.052 13 N -0.050 5.050 14 N -0.074 5.074 15 C -0.180 4.180 16 C 0.018 3.982 17 N -0.312 5.312 18 C -0.387 4.387 19 H 0.079 0.921 20 C -0.187 4.187 21 N -0.543 5.543 22 Si 0.731 3.269 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.216 1.216 26 C 0.056 3.944 27 C -0.190 4.190 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.242 0.758 36 H 0.221 0.779 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.035 0.965 44 H 0.063 0.937 45 H 0.098 0.902 46 H 0.036 0.964 47 H 0.081 0.919 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.204 -6.397 -11.611 19.429 hybrid contribution 0.743 0.232 0.137 0.790 sum -13.461 -6.165 -11.474 18.731 Atomic orbital electron populations 1.22680 0.81757 1.02240 0.99718 1.87873 1.19099 1.28832 1.95385 1.22593 0.94727 0.83866 0.99807 1.22010 0.92360 0.97659 1.04673 1.20258 0.94833 0.87977 0.86012 1.45903 1.56505 1.27459 1.04654 1.16658 0.78326 0.84245 0.81693 1.90733 1.44169 1.23016 1.83470 1.21654 1.11332 0.96399 0.93930 1.23349 0.97108 0.93490 0.92850 1.50352 1.41318 1.14346 1.09291 1.22151 1.04330 1.05524 0.73192 1.81995 1.20591 1.13173 0.89254 1.74646 1.09237 1.06455 1.17034 1.22411 0.99511 1.00668 0.95388 1.20908 0.86684 0.91917 0.98695 1.43931 0.99214 1.65076 1.23011 1.19138 1.01477 1.29581 0.88513 0.92117 1.25361 1.00168 0.97513 0.95698 1.69971 1.27910 1.45039 1.11374 0.86249 0.81476 0.78473 0.80731 1.20174 1.21647 1.21622 1.20655 0.99160 0.86832 0.87776 1.22596 0.92485 1.02136 1.01810 0.94480 0.90013 0.94285 0.93330 0.93789 0.88957 0.90695 0.75838 0.77929 0.89422 0.88165 0.88482 0.92483 0.90456 0.92552 0.96488 0.93715 0.90216 0.96384 0.91864 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.39 -5.70 10.70 -35.23 -0.38 -6.07 16 3 C 0.07 0.95 5.50 37.16 0.20 1.15 16 4 C -0.13 -2.03 4.31 -26.73 -0.12 -2.15 16 5 C 0.19 3.32 0.35 -131.78 -0.05 3.27 16 6 N -0.69 -11.61 3.22 -48.61 -0.16 -11.76 16 7 C 0.61 10.30 6.98 -12.47 -0.09 10.21 16 8 O -0.54 -9.85 13.16 5.28 0.07 -9.78 16 9 C -0.09 -1.44 6.99 -83.55 -0.58 -2.02 16 10 C 0.09 1.04 11.31 -16.84 -0.19 0.85 16 11 N -0.37 -3.92 4.03 -67.85 -0.27 -4.20 16 12 C 0.09 0.44 11.51 59.85 0.69 1.12 16 13 N -0.07 -1.01 13.78 60.35 0.83 -0.18 16 14 N -0.20 -3.25 12.04 32.85 0.40 -2.85 16 15 C -0.14 -2.34 4.75 -26.62 -0.13 -2.47 16 16 C 0.14 2.95 6.24 -3.71 -0.02 2.93 16 17 N -0.59 -14.66 2.96 -172.31 -0.51 -15.17 16 18 C -0.26 -7.05 9.51 -15.06 -0.14 -7.20 16 19 H 0.06 1.64 7.83 -52.49 -0.41 1.23 16 20 C 0.01 0.34 5.17 -17.43 -0.09 0.25 16 21 N -0.90 -26.46 11.18 55.49 0.62 -25.84 16 22 Si 0.90 21.84 29.55 -169.99 -5.02 16.82 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 26 C 0.18 4.42 4.95 -3.71 -0.02 4.40 16 27 C -0.15 -3.03 4.67 -26.61 -0.12 -3.15 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.64 6.38 -51.93 -0.33 0.31 16 32 H 0.04 0.64 7.39 -51.93 -0.38 0.26 16 33 H 0.09 1.62 6.19 -51.93 -0.32 1.30 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.41 6.67 6.96 -40.82 -0.28 6.39 16 36 H 0.20 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 40 H 0.06 0.81 6.44 -51.93 -0.33 0.47 16 41 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 42 H 0.06 1.13 7.93 -51.92 -0.41 0.72 16 43 H 0.02 0.35 6.94 -51.93 -0.36 -0.01 16 44 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.08 2.21 6.41 -51.93 -0.33 1.88 16 46 H 0.02 0.48 7.74 -51.93 -0.40 0.07 16 47 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 48 H 0.07 1.44 6.36 -51.93 -0.33 1.11 16 LS Contribution 381.43 15.07 5.75 5.75 Total: -1.00 -34.41 381.43 -5.48 -39.89 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -7.27 Total: 4.74 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 0.46 Total: 8.66 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: 0.91 Total: -60.00 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.31 Total: -15.86 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.41 -5.48 -39.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151115407.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.554 kcal (2) G-P(sol) polarization free energy of solvation -34.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds