Wall clock time and date at job start Tue Mar 31 2020 21:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42908 * 113.99263 * 2 1 4 4 C 1.53007 * 109.46587 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46562 * 183.77996 * 4 3 2 6 6 N 1.46490 * 109.45007 * 305.38253 * 5 4 3 7 7 C 1.34781 * 120.00365 * 300.00309 * 6 5 4 8 8 O 1.21593 * 119.99621 * 4.60632 * 7 6 5 9 9 C 1.47524 * 119.99944 * 184.60183 * 7 6 5 10 10 C 1.36597 * 125.76654 * 179.97438 * 9 7 6 11 11 N 1.34810 * 106.83918 * 179.97438 * 10 9 7 12 12 C 1.46505 * 126.59729 * 179.97438 * 11 10 9 13 13 N 1.40212 * 106.81246 * 0.02562 * 11 10 9 14 14 N 1.28765 * 108.36358 * 359.74125 * 13 11 10 15 15 C 1.53032 * 109.46225 * 65.35360 * 5 4 3 16 16 C 1.53190 * 109.31384 * 181.38336 * 15 5 4 17 17 N 1.46931 * 108.77560 * 305.36047 * 16 15 5 18 18 C 1.36935 * 120.63365 * 233.63036 * 17 16 15 19 19 H 1.08000 * 119.99579 * 38.03268 * 18 17 16 20 20 C 1.38809 * 119.99960 * 218.03178 * 18 17 16 21 21 N 1.31620 * 120.00299 * 3.61054 * 20 18 17 22 22 Si 1.86801 * 119.99966 * 183.60467 * 20 18 17 23 23 H 1.48505 * 109.47022 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47015 * 120.00463 * 22 20 18 25 25 H 1.48504 * 109.46888 * 240.00399 * 22 20 18 26 26 C 1.46923 * 118.73261 * 53.61085 * 17 16 15 27 27 C 1.53043 * 109.45399 * 185.41867 * 5 4 3 28 28 H 1.09000 * 109.47414 * 60.00914 * 1 2 3 29 29 H 1.09003 * 109.46584 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47791 * 299.99751 * 1 2 3 31 31 H 1.08996 * 109.47549 * 59.99905 * 3 2 1 32 32 H 1.09004 * 109.46856 * 299.99505 * 3 2 1 33 33 H 1.08994 * 109.46878 * 63.78156 * 4 3 2 34 34 H 1.08994 * 109.46938 * 303.77955 * 4 3 2 35 35 H 0.97007 * 120.00270 * 120.00239 * 6 5 4 36 36 H 1.08001 * 126.58125 * 359.97438 * 10 9 7 37 37 H 1.08998 * 109.46583 * 90.00031 * 12 11 10 38 38 H 1.09000 * 109.47464 * 210.00140 * 12 11 10 39 39 H 1.08998 * 109.46977 * 330.00901 * 12 11 10 40 40 H 1.09003 * 109.50031 * 301.33511 * 15 5 4 41 41 H 1.09004 * 109.50012 * 61.42915 * 15 5 4 42 42 H 1.09008 * 109.58547 * 185.57673 * 16 15 5 43 43 H 1.08995 * 109.58802 * 65.14843 * 16 15 5 44 44 H 0.97000 * 120.00383 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.58571 * 186.60449 * 26 17 16 46 46 H 1.09003 * 109.59271 * 66.17965 * 26 17 16 47 47 H 1.08992 * 109.49986 * 298.56462 * 27 5 4 48 48 H 1.08995 * 109.49888 * 58.66493 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1572 2.5796 0.0957 6 7 3.6310 3.4227 -0.9805 7 6 3.8196 3.0688 -2.2673 8 8 4.3523 2.0089 -2.5345 9 6 3.3795 3.9673 -3.3514 10 6 3.5117 3.7281 -4.6897 11 7 2.9847 4.7907 -5.3303 12 6 2.9018 4.9836 -6.7803 13 7 2.5322 5.6765 -4.3421 14 7 2.7762 5.1573 -3.1894 15 6 3.8073 3.2026 1.4490 16 6 4.4023 4.6121 1.5268 17 7 5.8439 4.5326 1.2538 18 6 6.7506 5.0644 2.1314 19 1 6.5821 4.9864 3.1953 20 6 7.8862 5.7038 1.6536 21 7 8.0567 5.8616 0.3581 22 14 9.1726 6.3403 2.8493 23 1 8.7477 6.0392 4.2400 24 1 10.4734 5.6786 2.5754 25 1 9.3194 7.8087 2.6829 26 6 6.2939 3.8713 0.0215 27 6 5.6777 2.4700 -0.0395 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3635 0.5138 0.8900 31 1 1.6884 1.8465 0.8899 32 1 1.6884 1.8464 -0.8901 33 1 3.8621 0.7034 -0.9210 34 1 3.8521 0.5868 0.8550 35 1 3.1468 4.2357 -0.7671 36 1 3.9536 2.8551 -5.1470 37 1 1.9627 4.5706 -7.1486 38 1 2.9446 6.0487 -7.0082 39 1 3.7364 4.4749 -7.2627 40 1 2.7239 3.2588 1.5545 41 1 4.2199 2.5888 2.2497 42 1 4.2414 5.0221 2.5239 43 1 3.9247 5.2519 0.7849 44 1 8.8501 6.3087 0.0242 45 1 7.3811 3.7924 0.0252 46 1 5.9705 4.4506 -0.8433 47 1 6.0726 1.8632 0.7752 48 1 5.9256 2.0048 -0.9935 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151115407.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:55 Heat of formation + Delta-G solvation = 17.504656 kcal Electronic energy + Delta-G solvation = -30989.784220 eV Core-core repulsion = 26889.070817 eV Total energy + Delta-G solvation = -4100.713403 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.18910 -41.46938 -38.94282 -38.54771 -36.18674 -35.60665 -33.64706 -33.03294 -31.86522 -31.62286 -30.38838 -28.65987 -27.63668 -26.41293 -24.95342 -24.55650 -23.63335 -23.15785 -22.12768 -21.63412 -20.08226 -19.26501 -18.65714 -17.48754 -17.21484 -17.15992 -16.86233 -16.82119 -16.43705 -15.79684 -15.75622 -15.59082 -15.54179 -15.13129 -15.09439 -14.81070 -14.33942 -14.16668 -13.96214 -13.86938 -13.75263 -13.18471 -13.11562 -12.98896 -12.78168 -12.70066 -12.63123 -12.25653 -12.20726 -12.18321 -12.05114 -11.90809 -11.82551 -11.38548 -11.30251 -11.26228 -10.73414 -10.54512 -10.48053 -10.33857 -9.90266 -8.48240 -7.84510 -5.43130 0.17938 0.66273 1.21250 1.46105 1.47238 1.57934 2.16100 2.37575 2.51107 2.82926 3.22972 3.32456 3.50516 3.74556 3.77764 3.93452 3.98865 4.03511 4.14221 4.21272 4.37577 4.37989 4.48687 4.51881 4.54471 4.56552 4.61315 4.67440 4.71801 4.77568 4.81406 4.84154 4.92733 5.04601 5.08177 5.14974 5.19752 5.31780 5.38522 5.48175 5.50834 5.65583 5.68091 5.79143 6.26525 6.47080 6.54967 6.93158 7.20419 7.24547 7.87638 8.44684 9.20503 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008666 B = 0.004391 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3230.091823 B = 6375.818084 C = 8829.348463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.074 3.926 4 C -0.118 4.118 5 C 0.201 3.799 6 N -0.695 5.695 7 C 0.605 3.395 8 O -0.556 6.556 9 C -0.127 4.127 10 C 0.106 3.894 11 N -0.351 5.351 12 C 0.075 3.925 13 N -0.096 5.096 14 N -0.229 5.229 15 C -0.127 4.127 16 C 0.142 3.858 17 N -0.606 5.606 18 C -0.265 4.265 19 H 0.066 0.934 20 C -0.043 4.043 21 N -0.935 5.935 22 Si 0.967 3.033 23 H -0.263 1.263 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.199 3.801 27 C -0.137 4.137 28 H 0.042 0.958 29 H 0.099 0.901 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.407 0.593 36 H 0.238 0.762 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.127 0.873 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.015 0.985 44 H 0.247 0.753 45 H 0.038 0.962 46 H -0.010 1.010 47 H 0.063 0.937 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.848 -7.816 -11.829 21.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C -0.002 4.002 4 C -0.157 4.157 5 C 0.115 3.885 6 N -0.345 5.345 7 C 0.390 3.610 8 O -0.435 6.435 9 C -0.267 4.267 10 C -0.052 4.052 11 N -0.136 5.136 12 C -0.064 4.064 13 N -0.076 5.076 14 N -0.102 5.102 15 C -0.166 4.166 16 C 0.016 3.984 17 N -0.330 5.330 18 C -0.395 4.395 19 H 0.083 0.917 20 C -0.239 4.239 21 N -0.580 5.580 22 Si 0.795 3.205 23 H -0.187 1.187 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.073 3.927 27 C -0.177 4.177 28 H 0.060 0.940 29 H 0.117 0.883 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.243 0.757 36 H 0.254 0.746 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.146 0.854 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.033 0.967 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.008 0.992 47 H 0.081 0.919 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.922 -7.267 -11.859 21.142 hybrid contribution 1.211 0.497 0.074 1.311 sum -14.712 -6.770 -11.785 20.029 Atomic orbital electron populations 1.22911 0.79711 1.03778 1.00614 1.87831 1.21345 1.28717 1.95550 1.22442 0.93321 0.84157 1.00266 1.21820 0.93803 0.96106 1.03946 1.20112 0.92555 0.89255 0.86560 1.45872 1.56484 1.27412 1.04737 1.16905 0.77784 0.84234 0.82047 1.90710 1.45104 1.23870 1.83798 1.21659 1.13418 0.96661 0.94969 1.23825 0.95522 0.94173 0.91724 1.50724 1.39138 1.12985 1.10785 1.22722 1.07010 1.06791 0.69850 1.81877 1.21689 1.14356 0.89707 1.74601 1.10255 1.07083 1.18259 1.22282 1.01419 0.97852 0.95030 1.21055 0.84189 0.94397 0.98736 1.44152 1.00960 1.65354 1.22520 1.19495 1.02052 1.28773 0.89186 0.91672 1.26111 1.02436 0.98249 0.97131 1.70155 1.28335 1.46268 1.13205 0.85219 0.78689 0.77306 0.79318 1.18663 1.21914 1.21924 1.20265 0.96800 0.88777 0.86876 1.22372 0.95001 0.98973 1.01377 0.93970 0.88276 0.92957 0.91808 0.94284 0.90779 0.90146 0.75726 0.74612 0.86963 0.87505 0.85425 0.88910 0.90121 0.92106 0.96706 0.94340 0.94332 0.99225 0.91881 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.73 16 2 O -0.41 -11.17 10.70 -148.98 -1.59 -12.77 16 3 C 0.07 1.97 5.50 71.98 0.40 2.37 16 4 C -0.12 -3.60 4.31 30.60 0.13 -3.47 16 5 C 0.20 6.75 0.35 3.63 0.00 6.75 16 6 N -0.69 -23.32 3.22 -425.95 -1.37 -24.69 16 7 C 0.61 20.75 6.98 86.69 0.61 21.36 16 8 O -0.56 -20.57 13.16 -4.01 -0.05 -20.63 16 9 C -0.13 -3.89 6.99 40.82 0.29 -3.61 16 10 C 0.11 2.32 11.31 83.85 0.95 3.27 16 11 N -0.35 -6.89 4.03 -368.58 -1.49 -8.38 16 12 C 0.07 0.51 11.51 127.77 1.47 1.98 16 13 N -0.10 -2.76 13.78 37.02 0.51 -2.25 16 14 N -0.23 -7.53 12.04 -50.00 -0.60 -8.14 16 15 C -0.13 -4.02 4.75 30.67 0.15 -3.87 16 16 C 0.14 5.72 6.24 86.36 0.54 6.26 16 17 N -0.61 -30.69 2.96 -699.08 -2.07 -32.76 16 18 C -0.26 -14.69 9.51 84.03 0.80 -13.89 16 19 H 0.07 3.50 7.83 -2.91 -0.02 3.48 16 20 C -0.04 -2.47 5.17 84.86 0.44 -2.03 16 21 N -0.93 -57.02 11.18 21.65 0.24 -56.78 16 22 Si 0.97 45.64 29.55 68.60 2.03 47.66 16 23 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 25 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 26 C 0.20 10.09 4.95 86.36 0.43 10.52 16 27 C -0.14 -5.65 4.67 30.67 0.14 -5.51 16 28 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 1.49 6.38 -2.39 -0.02 1.47 16 32 H 0.04 1.08 7.39 -2.39 -0.02 1.06 16 33 H 0.07 2.57 6.19 -2.39 -0.01 2.55 16 34 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.41 13.46 6.96 -92.70 -0.65 12.81 16 36 H 0.24 3.34 8.06 -2.91 -0.02 3.32 16 37 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.13 0.15 8.14 -2.39 -0.02 0.14 16 40 H 0.09 2.33 6.44 -2.39 -0.02 2.32 16 41 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 42 H 0.06 2.38 7.93 -2.38 -0.02 2.36 16 43 H 0.02 0.62 6.94 -2.39 -0.02 0.60 16 44 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 45 H 0.04 2.25 6.41 -2.38 -0.02 2.23 16 46 H -0.01 -0.58 7.74 -2.39 -0.02 -0.59 16 47 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 48 H 0.06 2.67 6.36 -2.39 -0.02 2.65 16 Total: -1.00 -77.93 381.43 3.52 -74.41 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.34 Total: 22.46 kcal Atomic # 6 Polarization: 14.27 SS G_CDS: 7.58 Total: 21.85 kcal Atomic # 7 Polarization: -128.21 SS G_CDS: -4.78 Total: -132.99 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -1.65 Total: -33.39 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -77.93 3.52 -74.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151115407.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.913 kcal (2) G-P(sol) polarization free energy of solvation -77.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds