Wall clock time and date at job start Tue Mar 31 2020 21:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00130 * 2 1 4 4 C 1.52990 * 109.46945 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46975 * 184.39293 * 4 3 2 6 6 N 1.46501 * 109.46213 * 303.06075 * 5 4 3 7 7 C 1.34778 * 119.99846 * 303.01133 * 6 5 4 8 8 O 1.21555 * 120.00215 * 355.02625 * 7 6 5 9 9 C 1.47802 * 119.99599 * 174.75297 * 7 6 5 10 10 C 1.40926 * 127.23349 * 179.97438 * 9 7 6 11 11 N 1.31133 * 105.77304 * 179.87264 * 10 9 7 12 12 N 1.28516 * 109.06060 * 0.39589 * 11 10 9 13 13 C 1.46501 * 124.44762 * 179.74090 * 12 11 10 14 14 N 1.28593 * 111.11250 * 359.73761 * 12 11 10 15 15 C 1.53037 * 109.44808 * 63.03007 * 5 4 3 16 16 C 1.53200 * 109.31303 * 181.37712 * 15 5 4 17 17 N 1.46925 * 108.77438 * 305.36505 * 16 15 5 18 18 C 1.36935 * 120.62768 * 233.63073 * 17 16 15 19 19 H 1.08004 * 120.00197 * 31.76178 * 18 17 16 20 20 C 1.38818 * 120.00101 * 211.76493 * 18 17 16 21 21 N 1.31620 * 119.99409 * 10.84292 * 20 18 17 22 22 Si 1.86796 * 120.00394 * 190.84395 * 20 18 17 23 23 H 1.48500 * 109.46787 * 59.99383 * 22 20 18 24 24 H 1.48498 * 109.47315 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46635 * 300.00011 * 22 20 18 26 26 C 1.46922 * 118.73973 * 53.60701 * 17 16 15 27 27 C 1.53041 * 109.45973 * 183.08859 * 5 4 3 28 28 H 1.09003 * 109.47420 * 300.00180 * 1 2 3 29 29 H 1.09002 * 109.46780 * 60.00117 * 1 2 3 30 30 H 1.08999 * 109.47328 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47147 * 59.99503 * 3 2 1 32 32 H 1.08996 * 109.47026 * 300.00019 * 3 2 1 33 33 H 1.08999 * 109.47535 * 64.39668 * 4 3 2 34 34 H 1.09002 * 109.47515 * 304.39266 * 4 3 2 35 35 H 0.96999 * 119.99873 * 123.01023 * 6 5 4 36 36 H 1.07994 * 127.11355 * 0.02562 * 10 9 7 37 37 H 1.09006 * 109.46585 * 269.99971 * 13 12 11 38 38 H 1.09001 * 109.47271 * 29.99127 * 13 12 11 39 39 H 1.08996 * 109.47353 * 149.99817 * 13 12 11 40 40 H 1.09003 * 109.49684 * 301.32675 * 15 5 4 41 41 H 1.09000 * 109.50224 * 61.42629 * 15 5 4 42 42 H 1.08997 * 109.58581 * 185.57643 * 16 15 5 43 43 H 1.09003 * 109.58066 * 65.15382 * 16 15 5 44 44 H 0.97002 * 119.99338 * 180.02562 * 21 20 18 45 45 H 1.09003 * 109.58738 * 186.60118 * 26 17 16 46 46 H 1.09006 * 109.58435 * 66.17990 * 26 17 16 47 47 H 1.09006 * 109.50117 * 298.58206 * 27 5 4 48 48 H 1.09006 * 109.49924 * 58.67815 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 6 4.1574 2.5781 0.1111 6 7 3.6748 3.4166 -0.9890 7 6 3.8576 3.0244 -2.2654 8 8 4.5011 2.0219 -2.5071 9 6 3.2704 3.8101 -3.3711 10 6 3.3651 3.5424 -4.7515 11 7 2.6925 4.4978 -5.3468 12 7 2.2235 5.2980 -4.4572 13 6 1.4225 6.4884 -4.7531 14 7 2.5496 4.9167 -3.2732 15 6 3.7583 3.2098 1.4467 16 6 4.3542 4.6181 1.5392 17 7 5.8047 4.5330 1.3215 18 6 6.6790 5.0673 2.2299 19 1 6.4232 5.0863 3.2790 20 6 7.8942 5.5845 1.8024 21 7 8.1197 5.7587 0.5174 22 14 9.2094 6.0334 3.0507 23 1 9.5869 4.8256 3.8278 24 1 10.4042 6.5599 2.3433 25 1 8.6825 7.0709 3.9733 26 6 6.2992 3.8635 0.1108 27 6 5.6816 2.4637 0.0343 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8630 0.7130 -0.9259 34 1 3.8515 0.5773 0.8489 35 1 3.2238 4.2540 -0.7987 36 1 3.8822 2.7191 -5.2216 37 1 2.0816 7.3471 -4.8813 38 1 0.8552 6.3260 -5.6696 39 1 0.7349 6.6778 -3.9289 40 1 2.6718 3.2695 1.5106 41 1 4.1384 2.5994 2.2659 42 1 4.1567 5.0342 2.5271 43 1 3.9067 5.2549 0.7761 44 1 8.9690 6.1198 0.2186 45 1 7.3853 3.7817 0.1562 46 1 6.0105 4.4389 -0.7688 47 1 6.0436 1.8602 0.8668 48 1 5.9641 1.9923 -0.9071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151357209.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:44 Heat of formation + Delta-G solvation = 58.132757 kcal Electronic energy + Delta-G solvation = -31071.923123 eV Core-core repulsion = 26972.971487 eV Total energy + Delta-G solvation = -4098.951636 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.66523 -40.21618 -37.83376 -37.22631 -34.54563 -33.90278 -32.94484 -31.75817 -31.35510 -30.10090 -28.88789 -28.05253 -26.52688 -24.94035 -24.11227 -23.11388 -22.13043 -22.05531 -20.86647 -20.17350 -18.61575 -17.86495 -17.06896 -16.98413 -16.74250 -16.32622 -15.93642 -15.10490 -14.87838 -14.85553 -14.57460 -14.43941 -14.03342 -13.84097 -13.41241 -13.33372 -13.17832 -13.09424 -12.99026 -12.60955 -12.32775 -11.92701 -11.65541 -11.48837 -11.40163 -11.07098 -11.04638 -11.03156 -10.82249 -10.70130 -10.46844 -10.40700 -10.22772 -10.00560 -9.87573 -9.73257 -9.47499 -9.40646 -9.21319 -8.60014 -8.44146 -6.57912 -5.75157 -3.24041 1.35256 1.94636 2.08126 3.33863 3.39392 3.45181 3.45815 3.49943 3.80758 3.90898 4.50538 4.70522 4.73742 4.91907 4.99669 5.03905 5.11034 5.19923 5.25873 5.34970 5.38596 5.39976 5.48366 5.52786 5.56646 5.63888 5.65885 5.80334 5.95038 6.02871 6.16234 6.21251 6.37698 6.41638 6.44232 6.52503 6.67777 6.72334 6.82231 6.93006 7.06415 7.21135 7.45826 7.75688 7.79751 7.83250 8.09984 8.46753 8.50761 9.25311 9.86663 10.45085 11.32285 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009195 B = 0.004240 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3044.309432 B = 6602.530908 C = 8628.484202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.065 3.935 4 C -0.130 4.130 5 C 0.194 3.806 6 N -0.695 5.695 7 C 0.610 3.390 8 O -0.523 6.523 9 C -0.039 4.039 10 C 0.033 3.967 11 N -0.295 5.295 12 N -0.148 5.148 13 C 0.105 3.895 14 N -0.250 5.250 15 C -0.140 4.140 16 C 0.145 3.855 17 N -0.590 5.590 18 C -0.255 4.255 19 H 0.063 0.937 20 C 0.007 3.993 21 N -0.902 5.902 22 Si 0.904 3.096 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.179 3.821 27 C -0.151 4.151 28 H 0.039 0.961 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.404 0.596 36 H 0.207 0.793 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.056 0.944 43 H 0.014 0.986 44 H 0.254 0.746 45 H 0.085 0.915 46 H 0.017 0.983 47 H 0.063 0.937 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.059 -3.376 -7.683 19.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.311 6.311 3 C -0.011 4.011 4 C -0.168 4.168 5 C 0.109 3.891 6 N -0.346 5.346 7 C 0.393 3.607 8 O -0.397 6.397 9 C -0.202 4.202 10 C -0.150 4.150 11 N -0.135 5.135 12 N -0.050 5.050 13 C -0.035 4.035 14 N -0.098 5.098 15 C -0.180 4.180 16 C 0.018 3.982 17 N -0.313 5.313 18 C -0.385 4.385 19 H 0.080 0.920 20 C -0.192 4.192 21 N -0.546 5.546 22 Si 0.733 3.267 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.054 3.946 27 C -0.191 4.191 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.240 0.760 36 H 0.224 0.776 37 H 0.112 0.888 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.075 0.925 43 H 0.032 0.968 44 H 0.064 0.936 45 H 0.104 0.896 46 H 0.035 0.965 47 H 0.081 0.919 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.079 -3.068 -8.181 19.185 hybrid contribution 0.732 0.385 0.755 1.120 sum -16.347 -2.683 -7.426 18.154 Atomic orbital electron populations 1.22685 0.81710 1.02318 0.99679 1.87878 1.19135 1.28730 1.95375 1.22604 0.94708 0.83967 0.99805 1.21987 0.92342 0.97644 1.04845 1.20281 0.95418 0.88016 0.85413 1.45962 1.59051 1.24978 1.04641 1.16551 0.79447 0.83471 0.81264 1.90749 1.39664 1.25685 1.83635 1.23270 1.04523 0.96086 0.96328 1.24829 1.00254 0.99213 0.90714 1.73978 1.13953 1.03474 1.22081 1.48003 1.36628 1.20630 0.99766 1.22214 0.94836 0.81954 1.04459 1.74400 1.14270 1.12763 1.08369 1.22420 0.99305 1.00594 0.95675 1.20878 0.86577 0.92000 0.98700 1.44006 0.99041 1.64485 1.23732 1.19108 0.97932 1.33034 0.88454 0.91961 1.25166 0.99881 0.98388 0.95812 1.69982 1.24007 1.47746 1.12877 0.86365 0.81325 0.78352 0.80623 1.20957 1.21670 1.20940 1.20694 0.99416 0.86833 0.87699 1.22620 0.92321 1.02086 1.02048 0.94277 0.94504 0.89940 0.93207 0.93898 0.89078 0.90382 0.75965 0.77584 0.88838 0.87773 0.87685 0.92465 0.90323 0.92535 0.96778 0.93608 0.89641 0.96497 0.91881 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.39 -5.60 10.70 -35.23 -0.38 -5.97 16 3 C 0.07 0.91 5.50 37.15 0.20 1.11 16 4 C -0.13 -2.02 4.32 -26.73 -0.12 -2.13 16 5 C 0.19 3.24 0.35 -131.78 -0.05 3.19 16 6 N -0.70 -11.26 3.35 -48.51 -0.16 -11.43 16 7 C 0.61 10.33 7.00 -12.35 -0.09 10.24 16 8 O -0.52 -9.84 13.22 5.32 0.07 -9.77 16 9 C -0.04 -0.59 7.21 -82.68 -0.60 -1.19 16 10 C 0.03 0.46 12.04 -16.83 -0.20 0.26 16 11 N -0.29 -3.86 12.01 30.90 0.37 -3.49 16 12 N -0.15 -1.78 4.35 -16.63 -0.07 -1.85 16 13 C 0.11 0.67 11.55 59.85 0.69 1.36 16 14 N -0.25 -3.54 11.85 33.42 0.40 -3.14 16 15 C -0.14 -2.27 4.72 -26.61 -0.13 -2.39 16 16 C 0.15 2.86 6.24 -3.71 -0.02 2.84 16 17 N -0.59 -14.38 2.98 -172.31 -0.51 -14.89 16 18 C -0.26 -6.91 9.57 -15.06 -0.14 -7.05 16 19 H 0.06 1.65 7.85 -52.48 -0.41 1.23 16 20 C 0.01 0.18 5.04 -17.43 -0.09 0.09 16 21 N -0.90 -26.28 11.09 55.49 0.62 -25.66 16 22 Si 0.90 21.68 29.57 -169.99 -5.03 16.66 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C 0.18 4.32 4.99 -3.71 -0.02 4.30 16 27 C -0.15 -3.02 4.71 -26.61 -0.13 -3.14 16 28 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.64 6.27 -51.93 -0.33 0.31 16 32 H 0.04 0.61 7.46 -51.93 -0.39 0.22 16 33 H 0.09 1.58 6.21 -51.93 -0.32 1.26 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.40 6.31 6.96 -40.82 -0.28 6.03 16 36 H 0.21 2.34 8.06 -52.49 -0.42 1.91 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.77 6.35 -51.93 -0.33 0.44 16 41 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.06 1.09 7.93 -51.93 -0.41 0.68 16 43 H 0.01 0.28 6.88 -51.93 -0.36 -0.08 16 44 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.09 2.36 6.14 -51.93 -0.32 2.04 16 46 H 0.02 0.44 7.74 -51.93 -0.40 0.04 16 47 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 48 H 0.07 1.52 6.26 -51.93 -0.32 1.20 16 LS Contribution 380.40 15.07 5.73 5.73 Total: -1.00 -33.44 380.40 -5.77 -39.20 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -7.24 Total: 5.68 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: 0.44 Total: 8.94 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: 0.63 Total: -60.46 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.31 Total: -15.75 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.44 -5.77 -39.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151357209.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.336 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds