Wall clock time and date at job start Tue Mar 31 2020 21:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00130 * 2 1 4 4 C 1.52990 * 109.46945 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46975 * 184.39293 * 4 3 2 6 6 N 1.46501 * 109.46213 * 303.06075 * 5 4 3 7 7 C 1.34778 * 119.99846 * 303.01133 * 6 5 4 8 8 O 1.21555 * 120.00215 * 355.02625 * 7 6 5 9 9 C 1.47802 * 119.99599 * 174.75297 * 7 6 5 10 10 C 1.40926 * 127.23349 * 179.97438 * 9 7 6 11 11 N 1.31133 * 105.77304 * 179.87264 * 10 9 7 12 12 N 1.28516 * 109.06060 * 0.39589 * 11 10 9 13 13 C 1.46501 * 124.44762 * 179.74090 * 12 11 10 14 14 N 1.28593 * 111.11250 * 359.73761 * 12 11 10 15 15 C 1.53037 * 109.44808 * 63.03007 * 5 4 3 16 16 C 1.53200 * 109.31303 * 181.37712 * 15 5 4 17 17 N 1.46925 * 108.77438 * 305.36505 * 16 15 5 18 18 C 1.36935 * 120.62768 * 233.63073 * 17 16 15 19 19 H 1.08004 * 120.00197 * 31.76178 * 18 17 16 20 20 C 1.38818 * 120.00101 * 211.76493 * 18 17 16 21 21 N 1.31620 * 119.99409 * 10.84292 * 20 18 17 22 22 Si 1.86796 * 120.00394 * 190.84395 * 20 18 17 23 23 H 1.48500 * 109.46787 * 59.99383 * 22 20 18 24 24 H 1.48498 * 109.47315 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46635 * 300.00011 * 22 20 18 26 26 C 1.46922 * 118.73973 * 53.60701 * 17 16 15 27 27 C 1.53041 * 109.45973 * 183.08859 * 5 4 3 28 28 H 1.09003 * 109.47420 * 300.00180 * 1 2 3 29 29 H 1.09002 * 109.46780 * 60.00117 * 1 2 3 30 30 H 1.08999 * 109.47328 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47147 * 59.99503 * 3 2 1 32 32 H 1.08996 * 109.47026 * 300.00019 * 3 2 1 33 33 H 1.08999 * 109.47535 * 64.39668 * 4 3 2 34 34 H 1.09002 * 109.47515 * 304.39266 * 4 3 2 35 35 H 0.96999 * 119.99873 * 123.01023 * 6 5 4 36 36 H 1.07994 * 127.11355 * 0.02562 * 10 9 7 37 37 H 1.09006 * 109.46585 * 269.99971 * 13 12 11 38 38 H 1.09001 * 109.47271 * 29.99127 * 13 12 11 39 39 H 1.08996 * 109.47353 * 149.99817 * 13 12 11 40 40 H 1.09003 * 109.49684 * 301.32675 * 15 5 4 41 41 H 1.09000 * 109.50224 * 61.42629 * 15 5 4 42 42 H 1.08997 * 109.58581 * 185.57643 * 16 15 5 43 43 H 1.09003 * 109.58066 * 65.15382 * 16 15 5 44 44 H 0.97002 * 119.99338 * 180.02562 * 21 20 18 45 45 H 1.09003 * 109.58738 * 186.60118 * 26 17 16 46 46 H 1.09006 * 109.58435 * 66.17990 * 26 17 16 47 47 H 1.09006 * 109.50117 * 298.58206 * 27 5 4 48 48 H 1.09006 * 109.49924 * 58.67815 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 6 4.1574 2.5781 0.1111 6 7 3.6748 3.4166 -0.9890 7 6 3.8576 3.0244 -2.2654 8 8 4.5011 2.0219 -2.5071 9 6 3.2704 3.8101 -3.3711 10 6 3.3651 3.5424 -4.7515 11 7 2.6925 4.4978 -5.3468 12 7 2.2235 5.2980 -4.4572 13 6 1.4225 6.4884 -4.7531 14 7 2.5496 4.9167 -3.2732 15 6 3.7583 3.2098 1.4467 16 6 4.3542 4.6181 1.5392 17 7 5.8047 4.5330 1.3215 18 6 6.6790 5.0673 2.2299 19 1 6.4232 5.0863 3.2790 20 6 7.8942 5.5845 1.8024 21 7 8.1197 5.7587 0.5174 22 14 9.2094 6.0334 3.0507 23 1 9.5869 4.8256 3.8278 24 1 10.4042 6.5599 2.3433 25 1 8.6825 7.0709 3.9733 26 6 6.2992 3.8635 0.1108 27 6 5.6816 2.4637 0.0343 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8630 0.7130 -0.9259 34 1 3.8515 0.5773 0.8489 35 1 3.2238 4.2540 -0.7987 36 1 3.8822 2.7191 -5.2216 37 1 2.0816 7.3471 -4.8813 38 1 0.8552 6.3260 -5.6696 39 1 0.7349 6.6778 -3.9289 40 1 2.6718 3.2695 1.5106 41 1 4.1384 2.5994 2.2659 42 1 4.1567 5.0342 2.5271 43 1 3.9067 5.2549 0.7761 44 1 8.9690 6.1198 0.2186 45 1 7.3853 3.7817 0.1562 46 1 6.0105 4.4389 -0.7688 47 1 6.0436 1.8602 0.8668 48 1 5.9641 1.9923 -0.9071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151357209.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:42 Heat of formation + Delta-G solvation = 33.989481 kcal Electronic energy + Delta-G solvation = -31072.970054 eV Core-core repulsion = 26972.971487 eV Total energy + Delta-G solvation = -4099.998567 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.68493 -41.59997 -39.03772 -38.57732 -36.23346 -34.83052 -34.08782 -33.44949 -32.68652 -31.77175 -30.40517 -28.91321 -27.65429 -26.43722 -25.34435 -24.62453 -23.65071 -23.09236 -22.20590 -21.66861 -20.10370 -19.12589 -18.56497 -18.02695 -17.93364 -17.45317 -16.97352 -16.80942 -16.36136 -15.90420 -15.82117 -15.67186 -15.54667 -15.28116 -15.08711 -14.84023 -14.33999 -14.03670 -13.88362 -13.75140 -13.64710 -13.22887 -13.01335 -12.97984 -12.77052 -12.70130 -12.57773 -12.28929 -12.21908 -12.11856 -12.07728 -11.92953 -11.79753 -11.52934 -11.45839 -11.28951 -10.77306 -10.53199 -10.51333 -10.45254 -9.98314 -8.58129 -7.83402 -5.34836 0.23562 0.88076 1.28507 1.47403 1.50093 1.56145 2.09833 2.24159 2.52562 2.80965 2.88766 3.32833 3.66837 3.72404 3.84917 3.96696 4.06596 4.11950 4.18587 4.29273 4.31088 4.37225 4.46163 4.48934 4.53453 4.54894 4.59321 4.66564 4.70324 4.76087 4.83600 4.88270 4.93677 5.02062 5.06985 5.13607 5.18828 5.28593 5.36614 5.52116 5.54353 5.61423 5.67321 5.79099 6.25426 6.43526 6.51106 7.02904 7.17657 7.18733 7.89133 8.42230 9.21660 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009195 B = 0.004240 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3044.309432 B = 6602.530908 C = 8628.484202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.074 3.926 4 C -0.121 4.121 5 C 0.201 3.799 6 N -0.691 5.691 7 C 0.609 3.391 8 O -0.549 6.549 9 C -0.066 4.066 10 C 0.026 3.974 11 N -0.297 5.297 12 N -0.136 5.136 13 C 0.088 3.912 14 N -0.254 5.254 15 C -0.127 4.127 16 C 0.141 3.859 17 N -0.606 5.606 18 C -0.261 4.261 19 H 0.069 0.931 20 C -0.049 4.049 21 N -0.937 5.937 22 Si 0.967 3.033 23 H -0.278 1.278 24 H -0.298 1.298 25 H -0.273 1.273 26 C 0.195 3.805 27 C -0.139 4.139 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.039 0.961 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.408 0.592 36 H 0.221 0.779 37 H 0.107 0.893 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.018 0.982 44 H 0.247 0.753 45 H 0.043 0.957 46 H -0.010 1.010 47 H 0.061 0.939 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.642 -3.151 -6.915 21.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.002 4.002 4 C -0.159 4.159 5 C 0.115 3.885 6 N -0.342 5.342 7 C 0.393 3.607 8 O -0.425 6.425 9 C -0.228 4.228 10 C -0.156 4.156 11 N -0.137 5.137 12 N -0.041 5.041 13 C -0.049 4.049 14 N -0.104 5.104 15 C -0.166 4.166 16 C 0.016 3.984 17 N -0.330 5.330 18 C -0.392 4.392 19 H 0.087 0.913 20 C -0.244 4.244 21 N -0.583 5.583 22 Si 0.795 3.205 23 H -0.204 1.204 24 H -0.225 1.225 25 H -0.198 1.198 26 C 0.070 3.930 27 C -0.179 4.179 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.116 0.884 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.245 0.755 36 H 0.238 0.762 37 H 0.125 0.875 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.114 0.886 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.036 0.964 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.008 0.992 47 H 0.080 0.920 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.713 -2.845 -7.393 21.245 hybrid contribution 1.430 0.386 0.451 1.548 sum -18.283 -2.459 -6.943 19.711 Atomic orbital electron populations 1.22913 0.79639 1.03787 1.00660 1.87836 1.21413 1.28742 1.95556 1.22461 0.93122 0.84234 1.00433 1.21808 0.93976 0.96203 1.03933 1.20132 0.92929 0.89274 0.86154 1.45887 1.58862 1.25015 1.04440 1.16773 0.78972 0.83252 0.81745 1.90729 1.40835 1.26893 1.84081 1.23059 1.06218 0.97080 0.96393 1.25115 1.00385 0.99849 0.90252 1.73986 1.14050 1.03543 1.22171 1.48636 1.35452 1.20976 0.98988 1.22792 0.95174 0.80424 1.06527 1.74346 1.14239 1.12384 1.09478 1.22297 1.01371 0.97889 0.95009 1.21064 0.83844 0.94406 0.99098 1.44216 1.00989 1.64634 1.23114 1.19496 0.98523 1.31853 0.89289 0.91291 1.25911 1.02078 0.99119 0.97330 1.70168 1.24024 1.49318 1.14753 0.85359 0.78471 0.78224 0.78469 1.20412 1.22486 1.19846 1.20305 0.97131 0.88702 0.86909 1.22403 0.95088 0.99035 1.01366 0.92761 0.93983 0.88378 0.91398 0.94266 0.91184 0.89930 0.75493 0.76237 0.87487 0.85288 0.85732 0.88620 0.90108 0.91882 0.96384 0.94432 0.93840 0.99188 0.92003 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.42 -10.99 10.70 -148.98 -1.59 -12.58 16 3 C 0.07 1.88 5.50 71.98 0.40 2.28 16 4 C -0.12 -3.62 4.32 30.59 0.13 -3.49 16 5 C 0.20 6.55 0.35 3.63 0.00 6.55 16 6 N -0.69 -22.16 3.35 -425.67 -1.43 -23.59 16 7 C 0.61 20.89 7.00 86.77 0.61 21.50 16 8 O -0.55 -21.30 13.22 -3.89 -0.05 -21.35 16 9 C -0.07 -2.03 7.21 42.24 0.30 -1.72 16 10 C 0.03 0.72 12.04 85.46 1.03 1.75 16 11 N -0.30 -7.41 12.01 -56.17 -0.67 -8.08 16 12 N -0.14 -3.04 4.35 -206.53 -0.90 -3.94 16 13 C 0.09 0.89 11.55 127.77 1.48 2.37 16 14 N -0.25 -6.96 11.85 -48.17 -0.57 -7.53 16 15 C -0.13 -3.79 4.72 30.67 0.14 -3.65 16 16 C 0.14 5.37 6.24 86.37 0.54 5.91 16 17 N -0.61 -29.78 2.98 -699.07 -2.09 -31.86 16 18 C -0.26 -14.18 9.57 84.04 0.80 -13.38 16 19 H 0.07 3.59 7.85 -2.91 -0.02 3.57 16 20 C -0.05 -2.75 5.04 84.86 0.43 -2.33 16 21 N -0.94 -56.51 11.09 21.65 0.24 -56.27 16 22 Si 0.97 45.15 29.57 68.60 2.03 47.18 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 24 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 26 C 0.20 9.79 4.99 86.36 0.43 10.22 16 27 C -0.14 -5.70 4.71 30.67 0.14 -5.55 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.48 6.27 -2.38 -0.01 1.46 16 32 H 0.04 1.03 7.46 -2.39 -0.02 1.01 16 33 H 0.07 2.44 6.21 -2.39 -0.01 2.42 16 34 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.41 12.37 6.96 -92.71 -0.64 11.73 16 36 H 0.22 5.01 8.06 -2.91 -0.02 4.98 16 37 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.10 2.20 6.35 -2.39 -0.02 2.18 16 41 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.06 2.31 7.93 -2.39 -0.02 2.29 16 43 H 0.02 0.69 6.88 -2.39 -0.02 0.67 16 44 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 45 H 0.04 2.53 6.14 -2.39 -0.01 2.51 16 46 H -0.01 -0.54 7.74 -2.38 -0.02 -0.56 16 47 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 48 H 0.06 2.70 6.26 -2.38 -0.01 2.69 16 Total: -1.00 -74.46 380.40 2.99 -71.46 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.34 Total: 24.38 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: 7.69 Total: 22.18 kcal Atomic # 7 Polarization: -125.85 SS G_CDS: -5.41 Total: -131.27 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -1.65 Total: -33.94 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -74.46 2.99 -71.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151357209.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.453 kcal (2) G-P(sol) polarization free energy of solvation -74.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds