Wall clock time and date at job start Tue Mar 31 2020 21:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99932 * 2 1 4 4 C 1.52997 * 109.47398 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47580 * 174.97573 * 4 3 2 6 6 N 1.46497 * 109.44870 * 302.20095 * 5 4 3 7 7 C 1.34777 * 119.99734 * 295.52144 * 6 5 4 8 8 O 1.21281 * 120.00253 * 5.28587 * 7 6 5 9 9 C 1.50707 * 119.99690 * 185.28929 * 7 6 5 10 10 N 1.46502 * 109.46659 * 179.97438 * 9 7 6 11 11 C 1.34431 * 126.81953 * 124.71602 * 10 9 7 12 12 N 1.30836 * 108.07556 * 179.88964 * 11 10 9 13 13 C 1.33242 * 109.82716 * 0.37554 * 12 11 10 14 14 N 1.30715 * 108.94663 * 359.76833 * 13 12 11 15 15 C 1.53041 * 109.45558 * 62.16436 * 5 4 3 16 16 C 1.53198 * 109.30980 * 181.38448 * 15 5 4 17 17 N 1.46927 * 108.77511 * 305.36812 * 16 15 5 18 18 C 1.36932 * 120.62827 * 233.58493 * 17 16 15 19 19 H 1.08002 * 119.99986 * 143.13812 * 18 17 16 20 20 C 1.38817 * 120.00376 * 323.13802 * 18 17 16 21 21 N 1.31618 * 120.00553 * 169.37508 * 20 18 17 22 22 Si 1.86806 * 119.99613 * 349.38023 * 20 18 17 23 23 H 1.48502 * 109.47120 * 85.83802 * 22 20 18 24 24 H 1.48494 * 109.46849 * 205.83681 * 22 20 18 25 25 H 1.48500 * 109.47055 * 325.83638 * 22 20 18 26 26 C 1.46928 * 118.73925 * 53.60683 * 17 16 15 27 27 C 1.53036 * 109.45911 * 182.23055 * 5 4 3 28 28 H 1.08999 * 109.47192 * 300.00465 * 1 2 3 29 29 H 1.09001 * 109.46722 * 59.99937 * 1 2 3 30 30 H 1.08993 * 109.46976 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47744 * 59.99468 * 3 2 1 32 32 H 1.09004 * 109.47093 * 299.99711 * 3 2 1 33 33 H 1.09002 * 109.47190 * 54.97526 * 4 3 2 34 34 H 1.09005 * 109.47068 * 294.97699 * 4 3 2 35 35 H 0.97000 * 120.00314 * 115.52074 * 6 5 4 36 36 H 1.08999 * 109.47162 * 299.99774 * 9 7 6 37 37 H 1.08992 * 109.47199 * 60.00072 * 9 7 6 38 38 H 1.07997 * 125.96087 * 0.02562 * 11 10 9 39 39 H 1.07999 * 125.52777 * 179.72078 * 13 12 11 40 40 H 1.09001 * 109.49694 * 61.44073 * 15 5 4 41 41 H 1.08993 * 109.49791 * 301.33889 * 15 5 4 42 42 H 1.08996 * 109.58112 * 65.15045 * 16 15 5 43 43 H 1.09004 * 109.58570 * 185.43431 * 16 15 5 44 44 H 0.96999 * 120.00485 * 180.02562 * 21 20 18 45 45 H 1.08997 * 109.58630 * 66.18255 * 26 17 16 46 46 H 1.08999 * 109.58201 * 186.60254 * 26 17 16 47 47 H 1.09003 * 109.49583 * 58.66534 * 27 5 4 48 48 H 1.09001 * 109.53096 * 298.58237 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1573 2.5770 -0.1270 6 7 3.6744 3.2175 -1.3528 7 6 3.9873 2.6941 -2.5548 8 8 4.5864 1.6416 -2.6206 9 6 3.5927 3.4168 -3.8171 10 7 4.0444 2.6495 -4.9805 11 6 3.2870 2.2154 -6.0027 12 7 4.0624 1.5733 -6.8384 13 6 5.3141 1.5695 -6.3817 14 7 5.3536 2.2163 -5.2464 15 6 3.7582 3.4252 1.0827 16 6 4.3539 4.8289 0.9359 17 7 5.8044 4.7085 0.7354 18 6 6.6788 5.3894 1.5397 19 1 7.6121 4.9313 1.8322 20 6 6.3657 6.6683 1.9792 21 7 7.0960 7.2408 2.9126 22 14 4.9075 7.5770 1.2458 23 1 3.6703 7.1970 1.9740 24 1 5.1241 9.0409 1.3684 25 1 4.7691 7.2153 -0.1878 26 6 6.2989 3.8440 -0.3449 27 6 5.6814 2.4513 -0.1836 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6886 1.8465 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5683 -0.8425 34 1 3.8638 0.7233 0.9307 35 1 3.1296 4.0182 -1.2995 36 1 2.5085 3.5239 -3.8506 37 1 4.0559 4.4033 -3.8308 38 1 2.2244 2.3715 -6.1157 39 1 6.1588 1.1064 -6.8698 40 1 4.1386 2.9621 1.9932 41 1 2.6718 3.4947 1.1358 42 1 3.9064 5.3276 0.0762 43 1 4.1543 5.4068 1.8383 44 1 6.8770 8.1343 3.2200 45 1 6.0101 4.2624 -1.3090 46 1 7.3849 3.7712 -0.2864 47 1 5.9638 1.8277 -1.0318 48 1 6.0441 1.9971 0.7386 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151406459.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:31 Heat of formation + Delta-G solvation = 48.772201 kcal Electronic energy + Delta-G solvation = -31137.411819 eV Core-core repulsion = 27038.054278 eV Total energy + Delta-G solvation = -4099.357540 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.16805 -40.60185 -38.14356 -37.58213 -34.88293 -34.13922 -32.33942 -31.77191 -31.27628 -30.57971 -29.47222 -28.07601 -26.69277 -24.92290 -23.21446 -22.87843 -22.51517 -22.08608 -21.03869 -20.51373 -19.06584 -17.72700 -17.42188 -16.94311 -16.60378 -16.18970 -15.79496 -15.40823 -15.26793 -15.16381 -14.96156 -14.48464 -14.23313 -14.13005 -13.83799 -13.74863 -13.60336 -13.30767 -12.96770 -12.71258 -12.48461 -12.00688 -11.93479 -11.89282 -11.78303 -11.45775 -11.29738 -11.19756 -10.87307 -10.66225 -10.31866 -10.24166 -10.12615 -10.07867 -9.88657 -9.82272 -9.70436 -9.63933 -9.32490 -8.95841 -8.67284 -6.89923 -6.00847 -3.49205 1.50934 2.03118 2.48487 2.89186 3.09855 3.18679 3.33817 3.38878 3.63151 4.15073 4.21423 4.42698 4.44365 4.71947 4.76287 4.83107 4.93993 4.99740 5.08496 5.11552 5.14162 5.15830 5.23126 5.31839 5.37637 5.43443 5.51120 5.72521 5.87598 5.92401 5.99785 6.06873 6.07016 6.21678 6.31545 6.33209 6.43452 6.46080 6.53472 6.59101 6.62980 6.71098 6.88962 7.05190 7.47747 7.96601 7.99429 8.15898 8.31760 8.88888 9.63770 10.05361 11.15285 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009579 B = 0.004304 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.460893 B = 6504.420121 C = 8346.831863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.066 3.934 4 C -0.128 4.128 5 C 0.197 3.803 6 N -0.714 5.714 7 C 0.504 3.496 8 O -0.502 6.502 9 C 0.107 3.893 10 N -0.366 5.366 11 C 0.250 3.750 12 N -0.546 5.546 13 C 0.188 3.812 14 N -0.282 5.282 15 C -0.141 4.141 16 C 0.125 3.875 17 N -0.604 5.604 18 C -0.262 4.262 19 H 0.082 0.918 20 C 0.027 3.973 21 N -0.912 5.912 22 Si 0.895 3.105 23 H -0.287 1.287 24 H -0.304 1.304 25 H -0.272 1.272 26 C 0.156 3.844 27 C -0.144 4.144 28 H 0.040 0.960 29 H 0.037 0.963 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.398 0.602 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.217 0.783 39 H 0.215 0.785 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.020 0.980 43 H 0.075 0.925 44 H 0.263 0.737 45 H 0.018 0.982 46 H 0.062 0.938 47 H 0.080 0.920 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.125 -8.940 -12.302 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.311 6.311 3 C -0.010 4.010 4 C -0.166 4.166 5 C 0.112 3.888 6 N -0.367 5.367 7 C 0.287 3.713 8 O -0.376 6.376 9 C -0.020 4.020 10 N -0.157 5.157 11 C -0.046 4.046 12 N -0.273 5.273 13 C -0.114 4.114 14 N -0.108 5.108 15 C -0.181 4.181 16 C -0.001 4.001 17 N -0.328 5.328 18 C -0.391 4.391 19 H 0.100 0.900 20 C -0.172 4.172 21 N -0.555 5.555 22 Si 0.726 3.274 23 H -0.214 1.214 24 H -0.232 1.232 25 H -0.198 1.198 26 C 0.030 3.970 27 C -0.184 4.184 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.233 0.767 36 H 0.144 0.856 37 H 0.138 0.862 38 H 0.233 0.767 39 H 0.232 0.768 40 H 0.103 0.897 41 H 0.078 0.922 42 H 0.038 0.962 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.036 0.964 46 H 0.081 0.919 47 H 0.099 0.901 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.951 -9.709 -12.054 20.837 hybrid contribution -1.642 1.441 -0.096 2.186 sum -15.592 -8.268 -12.150 21.427 Atomic orbital electron populations 1.22700 0.81492 1.02493 0.99725 1.87896 1.19305 1.28561 1.95367 1.22570 0.94558 0.84161 0.99731 1.21957 0.92566 0.97710 1.04364 1.20222 0.94901 0.90697 0.83020 1.46082 1.54422 1.30923 1.05316 1.20214 0.80483 0.86094 0.84536 1.90742 1.38926 1.21501 1.86443 1.21644 1.01992 0.95620 0.82737 1.49965 1.06435 1.41549 1.17757 1.26011 0.99586 0.94071 0.84981 1.70510 1.02561 1.23375 1.30890 1.26016 0.95580 0.98436 0.91416 1.78264 0.97281 1.17954 1.17297 1.22434 0.99567 0.98773 0.97286 1.21367 0.85794 0.93692 0.99222 1.44298 1.00265 1.53674 1.34604 1.18904 1.01727 0.95219 1.23240 0.90021 1.25526 0.97685 0.96161 0.97851 1.69755 1.40482 1.15691 1.29575 0.86790 0.82344 0.78290 0.79969 1.21430 1.23218 1.19775 1.20857 0.97649 0.88399 0.90059 1.22395 0.92738 1.00265 1.03008 0.94164 0.94433 0.89853 0.93216 0.93849 0.89288 0.90478 0.76699 0.85608 0.86207 0.76717 0.76822 0.89720 0.92225 0.96213 0.90723 0.92672 0.96358 0.91921 0.90111 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.39 -5.07 10.70 -35.23 -0.38 -5.44 16 3 C 0.07 0.78 5.40 37.16 0.20 0.98 16 4 C -0.13 -1.73 4.45 -26.73 -0.12 -1.85 16 5 C 0.20 2.76 0.35 -131.78 -0.05 2.72 16 6 N -0.71 -8.48 3.11 -47.57 -0.15 -8.63 16 7 C 0.50 6.27 7.09 -10.98 -0.08 6.19 16 8 O -0.50 -8.23 12.01 5.56 0.07 -8.16 16 9 C 0.11 0.93 7.03 -5.19 -0.04 0.90 16 10 N -0.37 -4.16 3.41 -63.81 -0.22 -4.38 16 11 C 0.25 2.41 12.63 -90.65 -1.14 1.27 16 12 N -0.55 -6.65 11.19 -15.83 -0.18 -6.82 16 13 C 0.19 2.34 13.03 -91.81 -1.20 1.15 16 14 N -0.28 -4.06 11.82 29.29 0.35 -3.71 16 15 C -0.14 -2.10 4.67 -26.61 -0.12 -2.22 16 16 C 0.13 2.37 3.90 -3.71 -0.01 2.35 16 17 N -0.60 -13.39 2.67 -172.32 -0.46 -13.85 16 18 C -0.26 -7.08 10.01 -15.06 -0.15 -7.23 16 19 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 20 C 0.03 0.76 5.35 -17.43 -0.09 0.66 16 21 N -0.91 -27.35 13.97 55.49 0.78 -26.58 16 22 Si 0.90 21.19 24.31 -169.99 -4.13 17.06 16 23 H -0.29 -6.40 6.52 56.52 0.37 -6.03 16 24 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.27 -6.18 6.65 56.52 0.38 -5.81 16 26 C 0.16 3.05 6.26 -3.71 -0.02 3.03 16 27 C -0.14 -2.43 4.59 -26.61 -0.12 -2.55 16 28 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.55 6.72 -51.93 -0.35 0.20 16 32 H 0.04 0.47 7.38 -51.93 -0.38 0.08 16 33 H 0.09 1.41 6.38 -51.93 -0.33 1.08 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.40 3.89 7.42 -40.82 -0.30 3.58 16 36 H 0.13 0.50 8.09 -51.93 -0.42 0.08 16 37 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.22 0.97 8.06 -52.49 -0.42 0.54 16 39 H 0.22 1.93 8.06 -52.49 -0.42 1.51 16 40 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.06 0.73 6.53 -51.93 -0.34 0.39 16 42 H 0.02 0.35 5.77 -51.93 -0.30 0.06 16 43 H 0.07 1.59 4.93 -51.93 -0.26 1.33 16 44 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.02 0.36 7.57 -51.93 -0.39 -0.04 16 46 H 0.06 1.30 7.93 -51.93 -0.41 0.88 16 47 H 0.08 1.43 6.07 -51.93 -0.32 1.11 16 48 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 373.49 15.07 5.63 5.63 Total: -1.00 -36.39 373.49 -7.75 -44.14 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -7.22 Total: 3.95 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -1.84 Total: 6.80 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: 0.12 Total: -63.97 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.31 Total: -13.61 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.13 Total: 17.06 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.39 -7.75 -44.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151406459.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.914 kcal (2) G-P(sol) polarization free energy of solvation -36.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds