Wall clock time and date at job start Tue Mar 31 2020 21:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99932 * 2 1 4 4 C 1.52997 * 109.47398 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47580 * 174.97573 * 4 3 2 6 6 N 1.46497 * 109.44870 * 302.20095 * 5 4 3 7 7 C 1.34777 * 119.99734 * 295.52144 * 6 5 4 8 8 O 1.21281 * 120.00253 * 5.28587 * 7 6 5 9 9 C 1.50707 * 119.99690 * 185.28929 * 7 6 5 10 10 N 1.46502 * 109.46659 * 179.97438 * 9 7 6 11 11 C 1.34431 * 126.81953 * 124.71602 * 10 9 7 12 12 N 1.30836 * 108.07556 * 179.88964 * 11 10 9 13 13 C 1.33242 * 109.82716 * 0.37554 * 12 11 10 14 14 N 1.30715 * 108.94663 * 359.76833 * 13 12 11 15 15 C 1.53041 * 109.45558 * 62.16436 * 5 4 3 16 16 C 1.53198 * 109.30980 * 181.38448 * 15 5 4 17 17 N 1.46927 * 108.77511 * 305.36812 * 16 15 5 18 18 C 1.36932 * 120.62827 * 233.58493 * 17 16 15 19 19 H 1.08002 * 119.99986 * 143.13812 * 18 17 16 20 20 C 1.38817 * 120.00376 * 323.13802 * 18 17 16 21 21 N 1.31618 * 120.00553 * 169.37508 * 20 18 17 22 22 Si 1.86806 * 119.99613 * 349.38023 * 20 18 17 23 23 H 1.48502 * 109.47120 * 85.83802 * 22 20 18 24 24 H 1.48494 * 109.46849 * 205.83681 * 22 20 18 25 25 H 1.48500 * 109.47055 * 325.83638 * 22 20 18 26 26 C 1.46928 * 118.73925 * 53.60683 * 17 16 15 27 27 C 1.53036 * 109.45911 * 182.23055 * 5 4 3 28 28 H 1.08999 * 109.47192 * 300.00465 * 1 2 3 29 29 H 1.09001 * 109.46722 * 59.99937 * 1 2 3 30 30 H 1.08993 * 109.46976 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47744 * 59.99468 * 3 2 1 32 32 H 1.09004 * 109.47093 * 299.99711 * 3 2 1 33 33 H 1.09002 * 109.47190 * 54.97526 * 4 3 2 34 34 H 1.09005 * 109.47068 * 294.97699 * 4 3 2 35 35 H 0.97000 * 120.00314 * 115.52074 * 6 5 4 36 36 H 1.08999 * 109.47162 * 299.99774 * 9 7 6 37 37 H 1.08992 * 109.47199 * 60.00072 * 9 7 6 38 38 H 1.07997 * 125.96087 * 0.02562 * 11 10 9 39 39 H 1.07999 * 125.52777 * 179.72078 * 13 12 11 40 40 H 1.09001 * 109.49694 * 61.44073 * 15 5 4 41 41 H 1.08993 * 109.49791 * 301.33889 * 15 5 4 42 42 H 1.08996 * 109.58112 * 65.15045 * 16 15 5 43 43 H 1.09004 * 109.58570 * 185.43431 * 16 15 5 44 44 H 0.96999 * 120.00485 * 180.02562 * 21 20 18 45 45 H 1.08997 * 109.58630 * 66.18255 * 26 17 16 46 46 H 1.08999 * 109.58201 * 186.60254 * 26 17 16 47 47 H 1.09003 * 109.49583 * 58.66534 * 27 5 4 48 48 H 1.09001 * 109.53096 * 298.58237 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1573 2.5770 -0.1270 6 7 3.6744 3.2175 -1.3528 7 6 3.9873 2.6941 -2.5548 8 8 4.5864 1.6416 -2.6206 9 6 3.5927 3.4168 -3.8171 10 7 4.0444 2.6495 -4.9805 11 6 3.2870 2.2154 -6.0027 12 7 4.0624 1.5733 -6.8384 13 6 5.3141 1.5695 -6.3817 14 7 5.3536 2.2163 -5.2464 15 6 3.7582 3.4252 1.0827 16 6 4.3539 4.8289 0.9359 17 7 5.8044 4.7085 0.7354 18 6 6.6788 5.3894 1.5397 19 1 7.6121 4.9313 1.8322 20 6 6.3657 6.6683 1.9792 21 7 7.0960 7.2408 2.9126 22 14 4.9075 7.5770 1.2458 23 1 3.6703 7.1970 1.9740 24 1 5.1241 9.0409 1.3684 25 1 4.7691 7.2153 -0.1878 26 6 6.2989 3.8440 -0.3449 27 6 5.6814 2.4513 -0.1836 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6886 1.8465 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5683 -0.8425 34 1 3.8638 0.7233 0.9307 35 1 3.1296 4.0182 -1.2995 36 1 2.5085 3.5239 -3.8506 37 1 4.0559 4.4033 -3.8308 38 1 2.2244 2.3715 -6.1157 39 1 6.1588 1.1064 -6.8698 40 1 4.1386 2.9621 1.9932 41 1 2.6718 3.4947 1.1358 42 1 3.9064 5.3276 0.0762 43 1 4.1543 5.4068 1.8383 44 1 6.8770 8.1343 3.2200 45 1 6.0101 4.2624 -1.3090 46 1 7.3849 3.7712 -0.2864 47 1 5.9638 1.8277 -1.0318 48 1 6.0441 1.9971 0.7386 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151406459.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:29 Heat of formation + Delta-G solvation = 22.980090 kcal Electronic energy + Delta-G solvation = -31138.530248 eV Core-core repulsion = 27038.054278 eV Total energy + Delta-G solvation = -4100.475970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.96446 -41.70941 -39.20275 -38.66737 -36.35530 -34.96484 -33.92402 -33.13753 -32.11339 -32.06702 -30.79445 -28.92713 -27.62548 -26.32683 -24.60274 -24.25917 -23.52513 -22.85096 -22.16717 -21.75990 -20.30917 -19.01840 -18.39591 -18.15626 -17.64595 -17.13346 -16.97904 -16.56749 -16.38527 -16.18046 -15.79818 -15.69772 -15.50639 -15.32497 -15.12784 -14.93750 -14.68643 -14.32241 -14.19603 -14.16670 -13.70142 -13.42201 -13.33579 -13.11609 -12.74345 -12.70020 -12.46453 -12.32598 -12.23418 -12.06530 -12.03657 -11.63494 -11.45855 -11.38081 -11.06254 -10.96392 -10.73254 -10.67202 -10.57449 -10.30015 -10.03727 -8.76780 -8.14585 -5.61538 0.74131 1.31837 1.34506 1.44547 1.55416 1.58920 2.06335 2.20500 2.44436 2.79999 3.13974 3.30147 3.49294 3.56488 3.68173 3.77973 3.87523 4.02958 4.10067 4.16410 4.18372 4.28840 4.30421 4.44502 4.46169 4.49418 4.53129 4.55996 4.60324 4.67620 4.84408 4.92084 4.93431 4.97994 5.02332 5.09648 5.18590 5.21025 5.29289 5.32179 5.51413 5.60726 5.92474 5.93917 6.15817 6.27044 6.58444 6.95559 7.16470 7.27193 7.60381 8.03948 9.05452 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009579 B = 0.004304 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.460893 B = 6504.420121 C = 8346.831863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.423 6.423 3 C 0.071 3.929 4 C -0.118 4.118 5 C 0.208 3.792 6 N -0.707 5.707 7 C 0.500 3.500 8 O -0.547 6.547 9 C 0.107 3.893 10 N -0.373 5.373 11 C 0.263 3.737 12 N -0.576 5.576 13 C 0.182 3.818 14 N -0.336 5.336 15 C -0.130 4.130 16 C 0.119 3.881 17 N -0.615 5.615 18 C -0.258 4.258 19 H 0.032 0.968 20 C -0.036 4.036 21 N -0.967 5.967 22 Si 0.966 3.034 23 H -0.257 1.257 24 H -0.318 1.318 25 H -0.249 1.249 26 C 0.161 3.839 27 C -0.134 4.134 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.414 0.586 36 H 0.185 0.815 37 H 0.131 0.869 38 H 0.268 0.732 39 H 0.231 0.769 40 H 0.070 0.930 41 H 0.103 0.897 42 H 0.049 0.951 43 H 0.055 0.945 44 H 0.262 0.738 45 H 0.029 0.971 46 H 0.034 0.966 47 H 0.071 0.929 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.058 -8.367 -14.135 25.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.343 6.343 3 C -0.005 4.005 4 C -0.157 4.157 5 C 0.122 3.878 6 N -0.361 5.361 7 C 0.285 3.715 8 O -0.423 6.423 9 C -0.018 4.018 10 N -0.164 5.164 11 C -0.033 4.033 12 N -0.304 5.304 13 C -0.120 4.120 14 N -0.163 5.163 15 C -0.169 4.169 16 C -0.006 4.006 17 N -0.340 5.340 18 C -0.388 4.388 19 H 0.049 0.951 20 C -0.230 4.230 21 N -0.612 5.612 22 Si 0.792 3.208 23 H -0.183 1.183 24 H -0.247 1.247 25 H -0.173 1.173 26 C 0.036 3.964 27 C -0.173 4.173 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.252 0.748 36 H 0.203 0.797 37 H 0.149 0.851 38 H 0.284 0.716 39 H 0.247 0.753 40 H 0.088 0.912 41 H 0.121 0.879 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.047 0.953 46 H 0.053 0.947 47 H 0.089 0.911 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.936 -9.152 -13.905 25.213 hybrid contribution -0.029 1.148 0.489 1.248 sum -18.965 -8.004 -13.416 24.571 Atomic orbital electron populations 1.22908 0.79461 1.03611 1.00994 1.87855 1.21586 1.29199 1.95620 1.22521 0.92610 0.84250 1.01151 1.21771 0.94580 0.96506 1.02816 1.19878 0.92510 0.91366 0.84038 1.45929 1.54418 1.31309 1.04461 1.20909 0.79385 0.85607 0.85602 1.90745 1.40758 1.23704 1.87102 1.21974 1.05487 0.94632 0.79701 1.50090 1.05631 1.41932 1.18791 1.27010 1.01121 0.91669 0.83453 1.70520 1.02738 1.24884 1.32273 1.26429 0.96533 0.97978 0.91109 1.78170 0.99890 1.19710 1.18485 1.22306 1.01827 0.95908 0.96878 1.21514 0.83551 0.96148 0.99366 1.44323 1.01442 1.53592 1.34657 1.18723 1.01162 0.95675 1.23242 0.95055 1.26324 1.01646 0.96918 0.98118 1.69942 1.43471 1.16086 1.31684 0.85658 0.79293 0.75436 0.80364 1.18263 1.24695 1.17293 1.20811 0.96364 0.89557 0.89713 1.22211 0.95437 0.97919 1.01773 0.93007 0.92934 0.89020 0.91831 0.92107 0.91677 0.91445 0.74807 0.79737 0.85095 0.71645 0.75290 0.91168 0.87919 0.93361 0.92640 0.92902 0.95290 0.94698 0.91054 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.42 -9.76 10.70 -148.98 -1.59 -11.36 16 3 C 0.07 1.41 5.40 71.98 0.39 1.80 16 4 C -0.12 -3.01 4.45 30.59 0.14 -2.88 16 5 C 0.21 5.42 0.35 3.63 0.00 5.42 16 6 N -0.71 -14.10 3.11 -422.80 -1.31 -15.42 16 7 C 0.50 10.96 7.09 87.66 0.62 11.58 16 8 O -0.55 -17.38 12.01 -3.03 -0.04 -17.42 16 9 C 0.11 1.39 7.03 85.64 0.60 1.99 16 10 N -0.37 -7.42 3.41 -355.80 -1.21 -8.63 16 11 C 0.26 4.14 12.63 180.36 2.28 6.41 16 12 N -0.58 -12.98 11.19 -204.00 -2.28 -15.26 16 13 C 0.18 4.45 13.03 180.76 2.36 6.80 16 14 N -0.34 -9.45 11.82 -61.24 -0.72 -10.17 16 15 C -0.13 -3.46 4.67 30.67 0.14 -3.32 16 16 C 0.12 4.14 3.90 86.36 0.34 4.47 16 17 N -0.62 -27.17 2.67 -699.08 -1.87 -29.04 16 18 C -0.26 -14.48 10.01 84.04 0.84 -13.64 16 19 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 20 C -0.04 -2.01 5.35 84.86 0.45 -1.56 16 21 N -0.97 -60.13 13.97 21.65 0.30 -59.83 16 22 Si 0.97 42.72 24.31 68.60 1.67 44.38 16 23 H -0.26 -10.12 6.52 99.48 0.65 -9.47 16 24 H -0.32 -14.75 7.11 99.48 0.71 -14.04 16 25 H -0.25 -9.96 6.65 99.48 0.66 -9.30 16 26 C 0.16 6.37 6.26 86.36 0.54 6.91 16 27 C -0.13 -4.55 4.59 30.67 0.14 -4.41 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.09 6.72 -2.39 -0.02 1.07 16 32 H 0.06 1.00 7.38 -2.39 -0.02 0.98 16 33 H 0.06 2.02 6.38 -2.39 -0.02 2.01 16 34 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 35 H 0.41 5.68 7.42 -92.71 -0.69 4.99 16 36 H 0.19 0.15 8.09 -2.39 -0.02 0.13 16 37 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.27 0.84 8.06 -2.91 -0.02 0.82 16 39 H 0.23 4.20 8.06 -2.91 -0.02 4.18 16 40 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.10 1.93 6.53 -2.39 -0.02 1.91 16 42 H 0.05 1.45 5.77 -2.39 -0.01 1.43 16 43 H 0.06 2.18 4.93 -2.39 -0.01 2.17 16 44 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 45 H 0.03 1.10 7.57 -2.39 -0.02 1.08 16 46 H 0.03 1.53 7.93 -2.39 -0.02 1.51 16 47 H 0.07 2.60 6.07 -2.39 -0.01 2.59 16 48 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -86.36 373.49 3.22 -83.14 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.19 Total: 18.37 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: 10.09 Total: 21.23 kcal Atomic # 7 Polarization: -131.25 SS G_CDS: -7.10 Total: -138.35 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -1.63 Total: -28.78 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 1.67 Total: 44.38 kcal Total: -86.36 3.22 -83.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151406459.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.119 kcal (2) G-P(sol) polarization free energy of solvation -86.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds