Wall clock time and date at job start Tue Mar 31 2020 20:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46899 * 109.46826 * 2 1 4 4 C 1.46902 * 110.99945 * 291.73153 * 3 2 1 5 5 C 1.50699 * 109.47038 * 289.06679 * 4 3 2 6 6 O 1.21298 * 120.00327 * 354.55823 * 5 4 3 7 7 N 1.34780 * 120.00061 * 174.55762 * 5 4 3 8 8 C 1.37091 * 119.99952 * 179.97438 * 7 5 4 9 9 H 1.08004 * 120.00526 * 0.02562 * 8 7 5 10 10 C 1.38952 * 119.99909 * 180.02562 * 8 7 5 11 11 N 1.31418 * 119.99920 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00271 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47391 * 59.99746 * 12 10 8 14 14 H 1.48495 * 109.47358 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47085 * 300.00006 * 12 10 8 16 16 C 1.46894 * 111.00214 * 55.68810 * 3 2 1 17 17 H 1.09002 * 109.46871 * 291.59102 * 16 3 2 18 18 C 1.52996 * 109.47324 * 171.59087 * 16 3 2 19 19 C 1.53005 * 109.47140 * 51.58583 * 16 3 2 20 20 N 1.46503 * 109.46785 * 55.92925 * 19 16 3 21 21 C 1.34775 * 119.99692 * 174.90842 * 20 19 16 22 22 O 1.21284 * 120.00375 * 0.02562 * 21 20 19 23 23 C 1.50704 * 120.00022 * 179.97438 * 21 20 19 24 24 N 1.46494 * 109.47158 * 180.02562 * 23 21 20 25 25 C 1.34948 * 126.03712 * 125.00916 * 24 23 21 26 26 C 1.35316 * 107.74726 * 179.97438 * 25 24 23 27 27 C 1.39869 * 107.91883 * 359.97438 * 26 25 24 28 28 N 1.30831 * 108.20137 * 359.73879 * 27 26 25 29 29 H 1.09003 * 109.47106 * 302.19021 * 1 2 3 30 30 H 1.08998 * 109.47177 * 62.19720 * 1 2 3 31 31 H 1.09003 * 109.46973 * 182.19293 * 1 2 3 32 32 H 1.09001 * 109.46986 * 239.99682 * 2 1 3 33 33 H 1.08997 * 109.46575 * 120.00270 * 2 1 3 34 34 H 1.08995 * 109.47356 * 49.06825 * 4 3 2 35 35 H 1.08997 * 109.47037 * 169.06899 * 4 3 2 36 36 H 0.96997 * 119.99346 * 359.97438 * 7 5 4 37 37 H 0.96992 * 120.00240 * 179.97438 * 11 10 8 38 38 H 1.09006 * 109.46518 * 299.99527 * 18 16 3 39 39 H 1.08996 * 109.47452 * 59.99746 * 18 16 3 40 40 H 1.09001 * 109.47415 * 180.02562 * 18 16 3 41 41 H 1.08990 * 109.47396 * 295.92879 * 19 16 3 42 42 H 1.09003 * 109.46974 * 175.92133 * 19 16 3 43 43 H 0.96996 * 119.99931 * 354.90919 * 20 19 16 44 44 H 1.09005 * 109.46621 * 60.00302 * 23 21 20 45 45 H 1.08997 * 109.47184 * 300.00808 * 23 21 20 46 46 H 1.08004 * 126.12446 * 359.97438 * 25 24 23 47 47 H 1.08002 * 126.04090 * 179.97438 * 26 25 24 48 48 H 1.08001 * 125.89385 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7163 2.0506 -1.2740 5 6 2.5862 1.4744 -2.3613 6 8 3.4484 0.6673 -2.0845 7 7 2.4063 1.8559 -3.6414 8 6 3.1981 1.3322 -4.6305 9 1 3.9657 0.6135 -4.3840 10 6 3.0130 1.7259 -5.9501 11 7 2.0793 2.6007 -6.2500 12 14 4.0912 1.0117 -7.2979 13 1 3.9234 -0.4632 -7.3368 14 1 3.6954 1.5901 -8.6071 15 1 5.5126 1.3411 -7.0214 16 6 1.4663 2.1390 1.1327 17 1 0.3955 2.2812 0.9861 18 6 2.1542 3.5026 1.2225 19 6 1.7047 1.3611 2.4285 20 7 3.1360 1.0855 2.5761 21 6 3.5969 0.4982 3.6983 22 8 2.8267 0.1975 4.5856 23 6 5.0691 0.2141 3.8500 24 7 5.3124 -0.4230 5.1465 25 6 5.9396 -1.6010 5.3469 26 6 5.9607 -1.8355 6.6794 27 6 5.3252 -0.7639 7.3151 28 7 4.9415 0.0862 6.3976 29 1 -0.3633 0.5475 0.8697 30 1 -0.3633 0.4793 -0.9090 31 1 -0.3633 -1.0269 0.0393 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.6677 1.8927 -1.5258 35 1 1.9108 3.1190 -1.1810 36 1 1.7167 2.5011 -3.8628 37 1 1.9502 2.8759 -7.1711 38 1 3.2249 3.3604 1.3691 39 1 1.9843 4.0568 0.2994 40 1 1.7439 4.0620 2.0633 41 1 1.1553 0.4204 2.3939 42 1 1.3594 1.9528 3.2763 43 1 3.7519 1.3256 1.8663 44 1 5.6271 1.1488 3.7937 45 1 5.3948 -0.4521 3.0512 46 1 6.3509 -2.2418 4.5810 47 1 6.3921 -2.6978 7.1661 48 1 5.1808 -0.6547 8.3799 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151870453.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:12 Heat of formation + Delta-G solvation = 26.814905 kcal Electronic energy + Delta-G solvation = -29415.583467 eV Core-core repulsion = 25315.273787 eV Total energy + Delta-G solvation = -4100.309680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.30403 -39.98574 -38.92352 -37.43319 -34.57582 -33.84990 -33.47785 -31.85447 -31.28792 -30.24459 -29.93029 -27.98866 -26.83033 -25.80848 -24.20489 -22.83484 -21.64991 -21.21047 -20.37198 -19.81888 -18.83562 -17.83447 -17.53582 -17.39549 -16.64119 -16.00591 -15.81935 -15.52250 -15.19602 -14.67717 -14.52221 -14.38289 -14.26006 -13.75681 -13.74798 -13.49253 -13.37728 -13.14061 -13.02241 -12.86462 -12.65977 -12.33500 -12.22895 -12.05135 -11.67819 -11.61684 -11.50180 -11.37886 -11.10265 -10.75117 -10.62355 -10.49340 -10.48051 -10.24953 -10.20715 -9.50657 -9.45782 -9.10404 -8.73309 -8.51573 -8.01362 -7.94498 -6.45303 -3.86242 1.74499 2.23069 2.47034 2.77428 3.09457 3.16341 3.22667 3.26324 3.84652 3.87805 4.18782 4.35381 4.55908 4.64030 4.69279 4.80358 4.86323 4.93585 5.05927 5.13782 5.22000 5.29504 5.35647 5.40777 5.49504 5.52937 5.54004 5.62257 5.65203 5.72201 5.83308 5.86750 5.93104 6.00903 6.17103 6.19808 6.27353 6.33112 6.45707 6.51139 6.78479 7.16937 7.27562 7.43999 7.51009 7.60141 8.02242 8.10747 8.58063 9.14510 9.51124 10.02788 10.72315 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016382 B = 0.002279 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.740704 B =12283.741193 C =13264.095496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.049 3.951 3 N -0.506 5.506 4 C 0.038 3.962 5 C 0.445 3.555 6 O -0.578 6.578 7 N -0.565 5.565 8 C -0.299 4.299 9 H 0.102 0.898 10 C 0.022 3.978 11 N -0.902 5.902 12 Si 0.930 3.070 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.274 1.274 16 C 0.062 3.938 17 H 0.059 0.941 18 C -0.147 4.147 19 C 0.130 3.870 20 N -0.711 5.711 21 C 0.498 3.502 22 O -0.521 6.521 23 C 0.114 3.886 24 N -0.361 5.361 25 C 0.053 3.947 26 C -0.274 4.274 27 C 0.037 3.963 28 N -0.268 5.268 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.391 0.609 37 H 0.272 0.728 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.414 0.586 44 H 0.114 0.886 45 H 0.128 0.872 46 H 0.174 0.826 47 H 0.146 0.854 48 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.829 -2.234 18.707 18.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.079 4.079 3 N -0.231 5.231 4 C -0.093 4.093 5 C 0.230 3.770 6 O -0.462 6.462 7 N -0.202 5.202 8 C -0.428 4.428 9 H 0.120 0.880 10 C -0.180 4.180 11 N -0.543 5.543 12 Si 0.757 3.243 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.199 1.199 16 C -0.047 4.047 17 H 0.077 0.923 18 C -0.204 4.204 19 C 0.006 3.994 20 N -0.365 5.365 21 C 0.282 3.718 22 O -0.396 6.396 23 C -0.012 4.012 24 N -0.144 5.144 25 C -0.092 4.092 26 C -0.303 4.303 27 C -0.151 4.151 28 N -0.089 5.089 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.109 0.891 36 H 0.224 0.776 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.251 0.749 44 H 0.132 0.868 45 H 0.146 0.854 46 H 0.191 0.809 47 H 0.164 0.836 48 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 1.700 -1.742 19.014 19.169 hybrid contribution -0.228 -0.584 -1.354 1.492 sum 1.472 -2.326 17.660 17.874 Atomic orbital electron populations 1.22492 0.98900 1.02273 1.01683 1.22236 0.91912 0.89906 1.03859 1.61858 1.58425 1.01848 1.00925 1.21974 0.98135 0.99432 0.89762 1.19720 0.87541 0.86425 0.83270 1.90500 1.36541 1.36926 1.82218 1.41871 1.33201 1.40016 1.05140 1.19617 1.14345 1.23033 0.85820 0.88024 1.25256 0.97455 0.96776 0.98475 1.69599 1.32426 1.31927 1.20381 0.85933 0.79931 0.79098 0.79340 1.19954 1.21006 1.19914 1.21951 0.98039 0.94206 0.90477 0.92333 1.21891 1.01525 0.95055 1.01941 1.21419 0.81520 0.99862 0.96580 1.45816 1.09772 1.61665 1.19274 1.20454 0.90160 0.78632 0.82588 1.90776 1.57587 1.51055 1.40205 1.21496 0.95618 1.01510 0.82539 1.48091 1.44419 1.16505 1.05353 1.22573 0.98784 0.89248 0.98641 1.21479 1.12614 1.03417 0.92822 1.23900 0.98355 0.93243 0.99555 1.77474 1.20725 1.22818 0.87862 0.92783 0.92348 0.92237 0.88939 0.91029 0.93069 0.89097 0.77583 0.91832 0.91692 0.91859 0.92221 0.91362 0.90979 0.74904 0.86770 0.85449 0.80903 0.83594 0.80221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.38 9.00 37.16 0.33 -2.05 16 2 C 0.05 0.69 5.19 -3.82 -0.02 0.67 16 3 N -0.51 -6.99 3.61 -228.09 -0.82 -7.82 16 4 C 0.04 0.60 5.22 -4.98 -0.03 0.58 16 5 C 0.45 9.69 7.32 -10.98 -0.08 9.61 16 6 O -0.58 -14.35 14.65 5.54 0.08 -14.27 16 7 N -0.57 -13.61 5.29 -10.96 -0.06 -13.67 16 8 C -0.30 -8.00 9.68 -14.94 -0.14 -8.15 16 9 H 0.10 2.85 7.16 -52.48 -0.38 2.48 16 10 C 0.02 0.57 5.50 -17.46 -0.10 0.48 16 11 N -0.90 -23.92 13.05 55.50 0.72 -23.19 16 12 Si 0.93 20.52 29.55 -169.99 -5.02 15.50 16 13 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 16 C 0.06 0.67 1.68 -67.71 -0.11 0.56 16 17 H 0.06 0.61 6.69 -51.93 -0.35 0.27 16 18 C -0.15 -1.46 8.99 37.16 0.33 -1.13 16 19 C 0.13 1.43 4.41 -4.04 -0.02 1.41 16 20 N -0.71 -7.63 4.89 -60.29 -0.29 -7.93 16 21 C 0.50 6.05 7.86 -10.98 -0.09 5.97 16 22 O -0.52 -8.60 15.72 5.55 0.09 -8.51 16 23 C 0.11 1.05 6.99 -5.19 -0.04 1.01 16 24 N -0.36 -4.20 3.39 -62.55 -0.21 -4.41 16 25 C 0.05 0.50 11.45 -17.22 -0.20 0.31 16 26 C -0.27 -2.63 10.80 -40.01 -0.43 -3.06 16 27 C 0.04 0.40 12.03 -17.37 -0.21 0.20 16 28 N -0.27 -3.71 11.66 30.62 0.36 -3.35 16 29 H 0.05 0.59 5.75 -51.93 -0.30 0.29 16 30 H 0.06 0.76 6.52 -51.93 -0.34 0.42 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.09 1.64 6.44 -51.93 -0.33 1.31 16 33 H 0.07 0.97 6.41 -51.93 -0.33 0.63 16 34 H 0.05 0.77 6.21 -51.93 -0.32 0.45 16 35 H 0.09 1.31 5.87 -51.93 -0.30 1.01 16 36 H 0.39 9.08 7.90 -40.82 -0.32 8.76 16 37 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.06 0.66 7.23 -51.93 -0.38 0.29 16 39 H 0.06 0.66 6.24 -51.93 -0.32 0.33 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.81 5.93 -51.93 -0.31 0.51 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.41 4.23 7.39 -40.82 -0.30 3.93 16 44 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.13 0.80 8.07 -51.93 -0.42 0.38 16 46 H 0.17 1.03 8.06 -52.48 -0.42 0.61 16 47 H 0.15 1.03 8.06 -52.49 -0.42 0.60 16 48 H 0.18 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 388.11 15.07 5.85 5.85 Total: -1.00 -34.54 388.11 -6.90 -41.44 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -6.80 Total: 13.94 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -0.79 Total: 6.41 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: -0.31 Total: -60.36 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: 0.17 Total: -22.77 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.54 -6.90 -41.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151870453.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.259 kcal (2) G-P(sol) polarization free energy of solvation -34.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds