Wall clock time and date at job start Tue Mar 31 2020 20:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46899 * 109.46826 * 2 1 4 4 C 1.46902 * 110.99945 * 291.73153 * 3 2 1 5 5 C 1.50699 * 109.47038 * 289.06679 * 4 3 2 6 6 O 1.21298 * 120.00327 * 354.55823 * 5 4 3 7 7 N 1.34780 * 120.00061 * 174.55762 * 5 4 3 8 8 C 1.37091 * 119.99952 * 179.97438 * 7 5 4 9 9 H 1.08004 * 120.00526 * 0.02562 * 8 7 5 10 10 C 1.38952 * 119.99909 * 180.02562 * 8 7 5 11 11 N 1.31418 * 119.99920 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00271 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47391 * 59.99746 * 12 10 8 14 14 H 1.48495 * 109.47358 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47085 * 300.00006 * 12 10 8 16 16 C 1.46894 * 111.00214 * 55.68810 * 3 2 1 17 17 H 1.09002 * 109.46871 * 291.59102 * 16 3 2 18 18 C 1.52996 * 109.47324 * 171.59087 * 16 3 2 19 19 C 1.53005 * 109.47140 * 51.58583 * 16 3 2 20 20 N 1.46503 * 109.46785 * 55.92925 * 19 16 3 21 21 C 1.34775 * 119.99692 * 174.90842 * 20 19 16 22 22 O 1.21284 * 120.00375 * 0.02562 * 21 20 19 23 23 C 1.50704 * 120.00022 * 179.97438 * 21 20 19 24 24 N 1.46494 * 109.47158 * 180.02562 * 23 21 20 25 25 C 1.34948 * 126.03712 * 125.00916 * 24 23 21 26 26 C 1.35316 * 107.74726 * 179.97438 * 25 24 23 27 27 C 1.39869 * 107.91883 * 359.97438 * 26 25 24 28 28 N 1.30831 * 108.20137 * 359.73879 * 27 26 25 29 29 H 1.09003 * 109.47106 * 302.19021 * 1 2 3 30 30 H 1.08998 * 109.47177 * 62.19720 * 1 2 3 31 31 H 1.09003 * 109.46973 * 182.19293 * 1 2 3 32 32 H 1.09001 * 109.46986 * 239.99682 * 2 1 3 33 33 H 1.08997 * 109.46575 * 120.00270 * 2 1 3 34 34 H 1.08995 * 109.47356 * 49.06825 * 4 3 2 35 35 H 1.08997 * 109.47037 * 169.06899 * 4 3 2 36 36 H 0.96997 * 119.99346 * 359.97438 * 7 5 4 37 37 H 0.96992 * 120.00240 * 179.97438 * 11 10 8 38 38 H 1.09006 * 109.46518 * 299.99527 * 18 16 3 39 39 H 1.08996 * 109.47452 * 59.99746 * 18 16 3 40 40 H 1.09001 * 109.47415 * 180.02562 * 18 16 3 41 41 H 1.08990 * 109.47396 * 295.92879 * 19 16 3 42 42 H 1.09003 * 109.46974 * 175.92133 * 19 16 3 43 43 H 0.96996 * 119.99931 * 354.90919 * 20 19 16 44 44 H 1.09005 * 109.46621 * 60.00302 * 23 21 20 45 45 H 1.08997 * 109.47184 * 300.00808 * 23 21 20 46 46 H 1.08004 * 126.12446 * 359.97438 * 25 24 23 47 47 H 1.08002 * 126.04090 * 179.97438 * 26 25 24 48 48 H 1.08001 * 125.89385 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7163 2.0506 -1.2740 5 6 2.5862 1.4744 -2.3613 6 8 3.4484 0.6673 -2.0845 7 7 2.4063 1.8559 -3.6414 8 6 3.1981 1.3322 -4.6305 9 1 3.9657 0.6135 -4.3840 10 6 3.0130 1.7259 -5.9501 11 7 2.0793 2.6007 -6.2500 12 14 4.0912 1.0117 -7.2979 13 1 3.9234 -0.4632 -7.3368 14 1 3.6954 1.5901 -8.6071 15 1 5.5126 1.3411 -7.0214 16 6 1.4663 2.1390 1.1327 17 1 0.3955 2.2812 0.9861 18 6 2.1542 3.5026 1.2225 19 6 1.7047 1.3611 2.4285 20 7 3.1360 1.0855 2.5761 21 6 3.5969 0.4982 3.6983 22 8 2.8267 0.1975 4.5856 23 6 5.0691 0.2141 3.8500 24 7 5.3124 -0.4230 5.1465 25 6 5.9396 -1.6010 5.3469 26 6 5.9607 -1.8355 6.6794 27 6 5.3252 -0.7639 7.3151 28 7 4.9415 0.0862 6.3976 29 1 -0.3633 0.5475 0.8697 30 1 -0.3633 0.4793 -0.9090 31 1 -0.3633 -1.0269 0.0393 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.6677 1.8927 -1.5258 35 1 1.9108 3.1190 -1.1810 36 1 1.7167 2.5011 -3.8628 37 1 1.9502 2.8759 -7.1711 38 1 3.2249 3.3604 1.3691 39 1 1.9843 4.0568 0.2994 40 1 1.7439 4.0620 2.0633 41 1 1.1553 0.4204 2.3939 42 1 1.3594 1.9528 3.2763 43 1 3.7519 1.3256 1.8663 44 1 5.6271 1.1488 3.7937 45 1 5.3948 -0.4521 3.0512 46 1 6.3509 -2.2418 4.5810 47 1 6.3921 -2.6978 7.1661 48 1 5.1808 -0.6547 8.3799 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151870453.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:10 Heat of formation + Delta-G solvation = 0.686138 kcal Electronic energy + Delta-G solvation = -29416.716495 eV Core-core repulsion = 25315.273787 eV Total energy + Delta-G solvation = -4101.442708 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.07532 -41.04564 -40.22316 -38.89449 -35.96379 -35.42172 -34.27709 -33.22535 -32.78920 -31.23283 -30.91060 -28.81701 -28.11187 -26.93649 -25.79371 -23.89442 -22.53471 -21.93765 -21.30761 -21.15196 -20.27257 -19.63960 -18.40038 -18.22184 -17.83011 -17.33789 -16.89884 -16.52494 -16.40812 -16.32351 -15.73677 -15.41805 -15.34681 -15.13184 -14.95570 -14.51815 -14.41662 -14.18090 -13.99682 -13.71457 -13.64679 -13.53812 -13.43980 -13.13716 -13.04666 -12.96524 -12.71594 -12.54857 -12.39803 -12.34846 -12.12311 -11.71769 -11.61397 -11.54062 -11.37059 -11.16953 -10.30291 -10.23096 -10.04867 -9.94850 -9.48354 -9.16104 -8.42556 -5.90243 0.99143 1.41279 1.43156 1.52946 1.53268 1.55824 2.02517 2.13184 2.23758 2.30928 2.74407 3.24891 3.46393 3.63600 3.72257 3.82987 3.99577 4.08471 4.09124 4.17540 4.26528 4.29706 4.30509 4.34714 4.49315 4.52098 4.59738 4.65655 4.74271 4.74729 4.87083 4.93143 5.01427 5.04639 5.09454 5.18485 5.29724 5.38195 5.43643 5.45010 5.76837 5.91332 6.10835 6.11340 6.21498 6.55273 6.65899 6.82566 7.18299 7.20830 7.63652 8.19305 8.74593 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016382 B = 0.002279 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.740704 B =12283.741193 C =13264.095496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 N -0.513 5.513 4 C 0.051 3.949 5 C 0.447 3.553 6 O -0.610 6.610 7 N -0.579 5.579 8 C -0.326 4.326 9 H 0.080 0.920 10 C -0.016 4.016 11 N -0.923 5.923 12 Si 0.989 3.011 13 H -0.273 1.273 14 H -0.274 1.274 15 H -0.271 1.271 16 C 0.070 3.930 17 H 0.073 0.927 18 C -0.145 4.145 19 C 0.133 3.867 20 N -0.702 5.702 21 C 0.497 3.503 22 O -0.569 6.569 23 C 0.111 3.889 24 N -0.373 5.373 25 C 0.050 3.950 26 C -0.284 4.284 27 C 0.026 3.974 28 N -0.322 5.322 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.113 0.887 36 H 0.394 0.606 37 H 0.275 0.725 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.418 0.582 44 H 0.133 0.867 45 H 0.159 0.841 46 H 0.208 0.792 47 H 0.170 0.830 48 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.089 -2.161 18.974 19.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.073 4.073 3 N -0.238 5.238 4 C -0.080 4.080 5 C 0.234 3.766 6 O -0.495 6.495 7 N -0.217 5.217 8 C -0.456 4.456 9 H 0.098 0.902 10 C -0.215 4.215 11 N -0.564 5.564 12 Si 0.813 3.187 13 H -0.199 1.199 14 H -0.199 1.199 15 H -0.197 1.197 16 C -0.038 4.038 17 H 0.090 0.910 18 C -0.203 4.203 19 C 0.009 3.991 20 N -0.356 5.356 21 C 0.283 3.717 22 O -0.447 6.447 23 C -0.013 4.013 24 N -0.156 5.156 25 C -0.095 4.095 26 C -0.313 4.313 27 C -0.160 4.160 28 N -0.143 5.143 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.131 0.869 36 H 0.227 0.773 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.256 0.744 44 H 0.151 0.849 45 H 0.176 0.824 46 H 0.225 0.775 47 H 0.187 0.813 48 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 1.956 -1.648 19.279 19.447 hybrid contribution -0.298 -0.645 -1.350 1.525 sum 1.658 -2.293 17.929 18.151 Atomic orbital electron populations 1.22419 0.97207 1.02962 1.02067 1.22069 0.93246 0.89887 1.02110 1.61794 1.59277 1.01858 1.00848 1.21816 0.97318 1.00156 0.88680 1.20740 0.87144 0.85072 0.83641 1.90476 1.38076 1.38133 1.82824 1.41951 1.33416 1.40622 1.05701 1.19579 1.15028 1.23739 0.87255 0.90227 1.25986 0.98552 0.96957 0.99992 1.69665 1.33255 1.32509 1.20960 0.85039 0.78310 0.78331 0.76982 1.19856 1.19896 1.19666 1.21979 0.98811 0.94174 0.88885 0.90957 1.21895 1.01345 0.94413 1.02607 1.21378 0.81623 0.99504 0.96581 1.45795 1.09814 1.60949 1.19016 1.20959 0.91192 0.77654 0.81926 1.90754 1.59046 1.53158 1.41770 1.21742 0.93585 1.03264 0.82723 1.48292 1.44760 1.17239 1.05305 1.23242 0.97767 0.88753 0.99692 1.21866 1.12505 1.03804 0.93091 1.24407 0.97777 0.93355 1.00445 1.77389 1.22857 1.24793 0.89262 0.90923 0.93116 0.91668 0.92930 0.90434 0.91615 0.86946 0.77263 0.91522 0.92016 0.91970 0.90520 0.92151 0.90763 0.74414 0.84928 0.82351 0.77506 0.81277 0.78293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.31 9.00 71.98 0.65 -3.66 16 2 C 0.05 1.52 5.19 86.30 0.45 1.96 16 3 N -0.51 -13.46 3.61 -875.54 -3.16 -16.62 16 4 C 0.05 1.56 5.22 85.56 0.45 2.01 16 5 C 0.45 19.52 7.32 87.66 0.64 20.16 16 6 O -0.61 -30.75 14.65 -3.09 -0.05 -30.80 16 7 N -0.58 -28.19 5.29 -306.97 -1.62 -29.82 16 8 C -0.33 -17.80 9.68 84.04 0.81 -16.99 16 9 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 10 C -0.02 -0.81 5.50 84.93 0.47 -0.34 16 11 N -0.92 -48.76 13.05 21.66 0.28 -48.48 16 12 Si 0.99 41.93 29.55 68.60 2.03 43.96 16 13 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 14 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 15 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 16 C 0.07 1.36 1.68 44.92 0.08 1.43 16 17 H 0.07 1.28 6.69 -2.39 -0.02 1.26 16 18 C -0.15 -2.53 8.99 71.98 0.65 -1.88 16 19 C 0.13 2.72 4.41 86.38 0.38 3.10 16 20 N -0.70 -14.19 4.89 -463.05 -2.26 -16.45 16 21 C 0.50 11.70 7.86 87.66 0.69 12.39 16 22 O -0.57 -18.79 15.72 -3.04 -0.05 -18.84 16 23 C 0.11 1.89 6.99 85.64 0.60 2.49 16 24 N -0.37 -8.30 3.39 -351.80 -1.19 -9.49 16 25 C 0.05 0.87 11.45 83.54 0.96 1.83 16 26 C -0.28 -5.04 10.80 21.99 0.24 -4.81 16 27 C 0.03 0.58 12.03 85.24 1.02 1.60 16 28 N -0.32 -8.89 11.66 -57.03 -0.66 -9.56 16 29 H 0.07 1.40 5.75 -2.39 -0.01 1.38 16 30 H 0.05 1.24 6.52 -2.39 -0.02 1.23 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 1.89 6.44 -2.39 -0.02 1.88 16 33 H 0.08 2.03 6.41 -2.39 -0.02 2.02 16 34 H 0.07 1.85 6.21 -2.39 -0.01 1.84 16 35 H 0.11 3.00 5.87 -2.39 -0.01 2.98 16 36 H 0.39 18.41 7.90 -92.71 -0.73 17.67 16 37 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 38 H 0.06 1.13 7.23 -2.38 -0.02 1.11 16 39 H 0.06 1.12 6.24 -2.39 -0.01 1.10 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 1.35 5.93 -2.39 -0.01 1.34 16 42 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.42 7.90 7.39 -92.71 -0.68 7.22 16 44 H 0.13 1.71 8.14 -2.38 -0.02 1.69 16 45 H 0.16 1.60 8.07 -2.39 -0.02 1.58 16 46 H 0.21 1.86 8.06 -2.91 -0.02 1.83 16 47 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 48 H 0.20 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -76.75 388.11 0.98 -75.77 By element: Atomic # 1 Polarization: 41.43 SS G_CDS: -0.41 Total: 41.03 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 8.08 Total: 19.29 kcal Atomic # 7 Polarization: -121.79 SS G_CDS: -8.62 Total: -130.41 kcal Atomic # 8 Polarization: -49.54 SS G_CDS: -0.09 Total: -49.63 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -76.75 0.98 -75.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151870453.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.454 kcal (2) G-P(sol) polarization free energy of solvation -76.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds