Wall clock time and date at job start Tue Mar 31 2020 20:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46908 * 109.47011 * 2 1 4 4 C 1.46900 * 110.99753 * 160.18269 * 3 2 1 5 5 C 1.50703 * 109.47141 * 288.34686 * 4 3 2 6 6 O 1.21293 * 119.99873 * 354.48642 * 5 4 3 7 7 N 1.34781 * 120.00065 * 174.48087 * 5 4 3 8 8 C 1.37096 * 119.99807 * 180.02562 * 7 5 4 9 9 H 1.07992 * 120.00309 * 0.02562 * 8 7 5 10 10 C 1.38956 * 119.99775 * 180.02562 * 8 7 5 11 11 N 1.31415 * 119.99868 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99994 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47199 * 89.99923 * 12 10 8 14 14 H 1.48497 * 109.47249 * 210.00080 * 12 10 8 15 15 H 1.48499 * 109.47316 * 330.00017 * 12 10 8 16 16 C 1.46897 * 111.00139 * 284.13536 * 3 2 1 17 17 H 1.08996 * 109.47090 * 50.00117 * 16 3 2 18 18 C 1.52998 * 109.47411 * 289.99713 * 16 3 2 19 19 C 1.52997 * 109.46823 * 169.99839 * 16 3 2 20 20 N 1.46502 * 109.47545 * 303.78422 * 19 16 3 21 21 C 1.34767 * 120.00195 * 174.86636 * 20 19 16 22 22 O 1.21602 * 120.00449 * 359.97438 * 21 20 19 23 23 C 1.47433 * 120.00093 * 179.97438 * 21 20 19 24 24 C 1.41289 * 126.41229 * 359.97438 * 23 21 20 25 25 N 1.30450 * 108.02218 * 180.02562 * 24 23 21 26 26 N 1.39931 * 108.89759 * 359.97438 * 25 24 23 27 27 C 1.46504 * 125.75365 * 180.02562 * 26 25 24 28 28 C 1.34261 * 108.49132 * 0.02562 * 26 25 24 29 29 H 1.09006 * 109.46598 * 306.04924 * 1 2 3 30 30 H 1.08998 * 109.47420 * 66.04980 * 1 2 3 31 31 H 1.08998 * 109.47004 * 186.05164 * 1 2 3 32 32 H 1.09004 * 109.47060 * 240.00529 * 2 1 3 33 33 H 1.08999 * 109.47727 * 120.00223 * 2 1 3 34 34 H 1.08994 * 109.47421 * 48.34762 * 4 3 2 35 35 H 1.09000 * 109.47225 * 168.34770 * 4 3 2 36 36 H 0.96995 * 119.99794 * 0.02562 * 7 5 4 37 37 H 0.96996 * 119.99720 * 180.02562 * 11 10 8 38 38 H 1.08995 * 109.47351 * 180.02562 * 18 16 3 39 39 H 1.08996 * 109.47324 * 300.00261 * 18 16 3 40 40 H 1.09006 * 109.47067 * 60.00073 * 18 16 3 41 41 H 1.09007 * 109.47169 * 183.78012 * 19 16 3 42 42 H 1.08999 * 109.47103 * 63.78503 * 19 16 3 43 43 H 0.96999 * 119.99303 * 354.86222 * 20 19 16 44 44 H 1.08000 * 125.99043 * 359.73947 * 24 23 21 45 45 H 1.08997 * 109.47507 * 269.98078 * 27 26 25 46 46 H 1.08998 * 109.46867 * 29.98457 * 27 26 25 47 47 H 1.09000 * 109.46886 * 149.97988 * 27 26 25 48 48 H 1.07999 * 126.28694 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4115 1.4513 0.4650 5 6 3.4594 1.1824 1.9470 6 8 2.4288 1.0570 2.5742 7 7 4.6474 1.0813 2.5756 8 6 4.6909 0.8362 3.9237 9 1 3.7734 0.7237 4.4820 10 6 5.9157 0.7324 4.5718 11 7 7.0322 0.8697 3.8925 12 14 5.9751 0.3991 6.4088 13 1 6.0066 -1.0666 6.6453 14 1 7.1946 1.0199 6.9854 15 1 4.7711 0.9792 7.0563 16 6 1.8794 1.9931 -1.3299 17 1 0.8649 1.8358 -1.6961 18 6 2.8757 1.3463 -2.2941 19 6 2.1609 3.4940 -1.2366 20 7 1.2664 4.0981 -0.2460 21 6 1.4035 5.3982 0.0816 22 8 2.2700 6.0697 -0.4447 23 6 0.5030 6.0062 1.0781 24 6 -0.5442 5.3565 1.7691 25 7 -1.1070 6.2275 2.5604 26 7 -0.4562 7.4578 2.4161 27 6 -0.7892 8.6916 3.1325 28 6 0.5249 7.3170 1.5105 29 1 -0.3633 0.6048 0.8309 30 1 -0.3634 0.4172 -0.9391 31 1 -0.3633 -1.0219 0.1083 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 4.0058 0.7030 -0.0594 35 1 3.8155 2.4432 0.2624 36 1 5.4715 1.1819 2.0740 37 1 7.8872 0.7970 4.3448 38 1 2.7719 1.7977 -3.2807 39 1 3.8902 1.5036 -1.9279 40 1 2.6752 0.2769 -2.3605 41 1 1.9915 3.9566 -2.2090 42 1 3.1964 3.6514 -0.9349 43 1 0.5755 3.5623 0.1740 44 1 -0.8315 4.3213 1.6579 45 1 -1.5259 9.2561 2.5610 46 1 -1.2006 8.4438 4.1110 47 1 0.1112 9.2928 3.2586 48 1 1.2059 8.0876 1.1808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151875104.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:42 Heat of formation + Delta-G solvation = 14.560481 kcal Electronic energy + Delta-G solvation = -29923.403327 eV Core-core repulsion = 25822.562255 eV Total energy + Delta-G solvation = -4100.841072 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.36099 -39.53733 -38.54779 -37.21319 -34.35458 -33.78157 -33.48738 -31.70147 -31.18315 -30.36502 -29.92498 -27.63343 -26.40884 -25.95400 -24.19008 -22.82754 -22.17487 -21.04069 -20.19711 -19.80209 -18.73710 -17.91982 -17.69798 -16.61795 -16.03582 -15.77848 -15.75477 -15.31235 -14.81165 -14.68087 -14.54598 -14.38077 -14.12712 -13.84394 -13.60982 -13.53205 -13.04871 -12.98315 -12.89015 -12.72448 -12.63268 -12.41316 -12.12264 -11.96204 -11.79696 -11.49440 -11.27791 -11.20351 -11.10758 -11.03079 -10.62123 -10.36743 -10.35995 -10.16456 -9.69651 -9.66485 -9.42565 -8.91905 -8.58377 -8.39336 -7.90724 -7.84578 -6.36302 -3.76633 1.51961 2.20521 2.24976 3.20656 3.28890 3.34864 3.44372 3.67299 3.97825 3.98906 4.26424 4.34496 4.67556 4.74315 4.84724 4.89877 5.00415 5.11916 5.16367 5.18521 5.24102 5.31160 5.38882 5.40817 5.46057 5.55668 5.62326 5.71049 5.78229 5.82938 5.89089 5.90683 6.03796 6.13812 6.18911 6.32087 6.36708 6.41733 6.53536 6.69006 6.70268 7.29892 7.38765 7.46388 7.60044 7.84277 8.12263 8.52447 8.68324 9.24247 9.61589 10.13761 10.81709 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007722 B = 0.003756 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3625.328656 B = 7453.038688 C = 9593.032157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.053 3.947 3 N -0.505 5.505 4 C 0.042 3.958 5 C 0.446 3.554 6 O -0.574 6.574 7 N -0.568 5.568 8 C -0.296 4.296 9 H 0.102 0.898 10 C 0.021 3.979 11 N -0.903 5.903 12 Si 0.928 3.072 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.270 1.270 16 C 0.064 3.936 17 H 0.090 0.910 18 C -0.186 4.186 19 C 0.131 3.869 20 N -0.707 5.707 21 C 0.595 3.405 22 O -0.562 6.562 23 C -0.288 4.288 24 C 0.089 3.911 25 N -0.300 5.300 26 N -0.368 5.368 27 C 0.098 3.902 28 C 0.124 3.876 29 H 0.067 0.933 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.029 0.971 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.089 0.911 36 H 0.391 0.609 37 H 0.270 0.730 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.408 0.592 44 H 0.192 0.808 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.842 9.042 -10.758 19.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.075 4.075 3 N -0.229 5.229 4 C -0.090 4.090 5 C 0.231 3.769 6 O -0.458 6.458 7 N -0.205 5.205 8 C -0.426 4.426 9 H 0.120 0.880 10 C -0.180 4.180 11 N -0.545 5.545 12 Si 0.755 3.245 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.195 1.195 16 C -0.045 4.045 17 H 0.108 0.892 18 C -0.245 4.245 19 C 0.007 3.993 20 N -0.358 5.358 21 C 0.383 3.617 22 O -0.442 6.442 23 C -0.303 4.303 24 C -0.098 4.098 25 N -0.120 5.120 26 N -0.147 5.147 27 C -0.043 4.043 28 C -0.027 4.027 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.224 0.776 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.243 0.757 44 H 0.208 0.792 45 H 0.096 0.904 46 H 0.111 0.889 47 H 0.109 0.891 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -13.989 10.017 -9.339 19.577 hybrid contribution 1.635 -0.974 -0.272 1.922 sum -12.355 9.044 -9.611 18.078 Atomic orbital electron populations 1.21703 0.95274 1.01225 1.01570 1.22098 0.95937 0.88467 1.00970 1.61793 1.19931 1.18950 1.22195 1.21919 0.89382 1.01901 0.95754 1.19755 0.84604 0.84277 0.88232 1.90510 1.33142 1.54980 1.67124 1.41873 1.06482 1.63008 1.09133 1.19667 0.94116 1.45200 0.83574 0.88022 1.25232 0.94778 0.97639 1.00330 1.69614 0.97636 1.50422 1.36792 0.85893 0.77765 0.78430 0.82408 1.20490 1.20989 1.19482 1.22040 1.00079 0.93277 0.89129 0.89184 1.22410 1.00597 1.01485 1.00033 1.21379 0.94855 0.91289 0.91788 1.45488 1.36654 1.10038 1.43572 1.17178 0.82523 0.81581 0.80446 1.90742 1.35732 1.62408 1.55293 1.20268 1.05707 0.94641 1.09654 1.24126 0.93280 0.99526 0.92907 1.77189 1.20987 0.89844 1.23979 1.48403 1.24903 1.09674 1.31714 1.21958 1.02744 0.81774 0.97814 1.22933 0.91638 0.97967 0.90206 0.91377 0.93716 0.92934 0.95270 0.89741 0.93338 0.89337 0.77637 0.91978 0.91903 0.91720 0.91842 0.91482 0.91173 0.75678 0.79163 0.90394 0.88883 0.89100 0.79629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.93 37.16 0.37 -1.34 16 2 C 0.05 0.76 5.14 -3.82 -0.02 0.74 16 3 N -0.50 -7.42 3.56 -228.08 -0.81 -8.23 16 4 C 0.04 0.72 4.19 -4.97 -0.02 0.70 16 5 C 0.45 10.36 7.19 -10.98 -0.08 10.28 16 6 O -0.57 -15.01 14.90 5.55 0.08 -14.92 16 7 N -0.57 -14.48 5.29 -10.96 -0.06 -14.54 16 8 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 9 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 10 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 11 N -0.90 -24.95 13.05 55.50 0.72 -24.22 16 12 Si 0.93 21.39 29.55 -169.99 -5.02 16.36 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 16 C 0.06 0.73 2.35 -67.72 -0.16 0.57 16 17 H 0.09 0.91 6.74 -51.93 -0.35 0.56 16 18 C -0.19 -1.88 8.51 37.16 0.32 -1.56 16 19 C 0.13 1.65 4.91 -4.04 -0.02 1.63 16 20 N -0.71 -9.57 5.36 -61.38 -0.33 -9.90 16 21 C 0.60 9.21 7.81 -12.52 -0.10 9.11 16 22 O -0.56 -10.27 16.89 5.28 0.09 -10.18 16 23 C -0.29 -4.01 6.13 -105.07 -0.64 -4.65 16 24 C 0.09 1.18 11.50 -16.98 -0.20 0.98 16 25 N -0.30 -4.10 12.50 30.86 0.39 -3.72 16 26 N -0.37 -4.15 3.98 -67.60 -0.27 -4.41 16 27 C 0.10 0.62 11.44 59.85 0.68 1.30 16 28 C 0.12 1.48 11.30 -16.56 -0.19 1.29 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.04 0.45 6.99 -51.93 -0.36 0.09 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.03 0.37 6.17 -51.93 -0.32 0.05 16 33 H 0.08 1.52 6.55 -51.93 -0.34 1.18 16 34 H 0.05 0.78 7.12 -51.93 -0.37 0.41 16 35 H 0.09 1.51 6.01 -51.93 -0.31 1.20 16 36 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 37 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.71 6.68 -51.93 -0.35 0.36 16 40 H 0.06 0.64 6.45 -51.93 -0.34 0.30 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 1.02 6.44 -51.93 -0.33 0.68 16 43 H 0.41 5.14 7.23 -40.82 -0.30 4.84 16 44 H 0.19 2.08 7.50 -52.49 -0.39 1.69 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.19 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 394.29 15.07 5.94 5.94 Total: -1.00 -35.43 394.29 -6.54 -41.97 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -6.98 Total: 14.75 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -0.29 Total: 11.09 kcal Atomic # 7 Polarization: -64.66 SS G_CDS: -0.36 Total: -65.02 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: 0.17 Total: -25.10 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.43 -6.54 -41.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151875104.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.531 kcal (2) G-P(sol) polarization free energy of solvation -35.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds