Wall clock time and date at job start Tue Mar 31 2020 20:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46908 * 109.47011 * 2 1 4 4 C 1.46900 * 110.99753 * 160.18269 * 3 2 1 5 5 C 1.50703 * 109.47141 * 288.34686 * 4 3 2 6 6 O 1.21293 * 119.99873 * 354.48642 * 5 4 3 7 7 N 1.34781 * 120.00065 * 174.48087 * 5 4 3 8 8 C 1.37096 * 119.99807 * 180.02562 * 7 5 4 9 9 H 1.07992 * 120.00309 * 0.02562 * 8 7 5 10 10 C 1.38956 * 119.99775 * 180.02562 * 8 7 5 11 11 N 1.31415 * 119.99868 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99994 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47199 * 89.99923 * 12 10 8 14 14 H 1.48497 * 109.47249 * 210.00080 * 12 10 8 15 15 H 1.48499 * 109.47316 * 330.00017 * 12 10 8 16 16 C 1.46897 * 111.00139 * 284.13536 * 3 2 1 17 17 H 1.08996 * 109.47090 * 50.00117 * 16 3 2 18 18 C 1.52998 * 109.47411 * 289.99713 * 16 3 2 19 19 C 1.52997 * 109.46823 * 169.99839 * 16 3 2 20 20 N 1.46502 * 109.47545 * 303.78422 * 19 16 3 21 21 C 1.34767 * 120.00195 * 174.86636 * 20 19 16 22 22 O 1.21602 * 120.00449 * 359.97438 * 21 20 19 23 23 C 1.47433 * 120.00093 * 179.97438 * 21 20 19 24 24 C 1.41289 * 126.41229 * 359.97438 * 23 21 20 25 25 N 1.30450 * 108.02218 * 180.02562 * 24 23 21 26 26 N 1.39931 * 108.89759 * 359.97438 * 25 24 23 27 27 C 1.46504 * 125.75365 * 180.02562 * 26 25 24 28 28 C 1.34261 * 108.49132 * 0.02562 * 26 25 24 29 29 H 1.09006 * 109.46598 * 306.04924 * 1 2 3 30 30 H 1.08998 * 109.47420 * 66.04980 * 1 2 3 31 31 H 1.08998 * 109.47004 * 186.05164 * 1 2 3 32 32 H 1.09004 * 109.47060 * 240.00529 * 2 1 3 33 33 H 1.08999 * 109.47727 * 120.00223 * 2 1 3 34 34 H 1.08994 * 109.47421 * 48.34762 * 4 3 2 35 35 H 1.09000 * 109.47225 * 168.34770 * 4 3 2 36 36 H 0.96995 * 119.99794 * 0.02562 * 7 5 4 37 37 H 0.96996 * 119.99720 * 180.02562 * 11 10 8 38 38 H 1.08995 * 109.47351 * 180.02562 * 18 16 3 39 39 H 1.08996 * 109.47324 * 300.00261 * 18 16 3 40 40 H 1.09006 * 109.47067 * 60.00073 * 18 16 3 41 41 H 1.09007 * 109.47169 * 183.78012 * 19 16 3 42 42 H 1.08999 * 109.47103 * 63.78503 * 19 16 3 43 43 H 0.96999 * 119.99303 * 354.86222 * 20 19 16 44 44 H 1.08000 * 125.99043 * 359.73947 * 24 23 21 45 45 H 1.08997 * 109.47507 * 269.98078 * 27 26 25 46 46 H 1.08998 * 109.46867 * 29.98457 * 27 26 25 47 47 H 1.09000 * 109.46886 * 149.97988 * 27 26 25 48 48 H 1.07999 * 126.28694 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4115 1.4513 0.4650 5 6 3.4594 1.1824 1.9470 6 8 2.4288 1.0570 2.5742 7 7 4.6474 1.0813 2.5756 8 6 4.6909 0.8362 3.9237 9 1 3.7734 0.7237 4.4820 10 6 5.9157 0.7324 4.5718 11 7 7.0322 0.8697 3.8925 12 14 5.9751 0.3991 6.4088 13 1 6.0066 -1.0666 6.6453 14 1 7.1946 1.0199 6.9854 15 1 4.7711 0.9792 7.0563 16 6 1.8794 1.9931 -1.3299 17 1 0.8649 1.8358 -1.6961 18 6 2.8757 1.3463 -2.2941 19 6 2.1609 3.4940 -1.2366 20 7 1.2664 4.0981 -0.2460 21 6 1.4035 5.3982 0.0816 22 8 2.2700 6.0697 -0.4447 23 6 0.5030 6.0062 1.0781 24 6 -0.5442 5.3565 1.7691 25 7 -1.1070 6.2275 2.5604 26 7 -0.4562 7.4578 2.4161 27 6 -0.7892 8.6916 3.1325 28 6 0.5249 7.3170 1.5105 29 1 -0.3633 0.6048 0.8309 30 1 -0.3634 0.4172 -0.9391 31 1 -0.3633 -1.0219 0.1083 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 4.0058 0.7030 -0.0594 35 1 3.8155 2.4432 0.2624 36 1 5.4715 1.1819 2.0740 37 1 7.8872 0.7970 4.3448 38 1 2.7719 1.7977 -3.2807 39 1 3.8902 1.5036 -1.9279 40 1 2.6752 0.2769 -2.3605 41 1 1.9915 3.9566 -2.2090 42 1 3.1964 3.6514 -0.9349 43 1 0.5755 3.5623 0.1740 44 1 -0.8315 4.3213 1.6579 45 1 -1.5259 9.2561 2.5610 46 1 -1.2006 8.4438 4.1110 47 1 0.1112 9.2928 3.2586 48 1 1.2059 8.0876 1.1808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151875104.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:40 Heat of formation + Delta-G solvation = -12.891552 kcal Electronic energy + Delta-G solvation = -29924.593736 eV Core-core repulsion = 25822.562255 eV Total energy + Delta-G solvation = -4102.031481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.31013 -40.81363 -39.95533 -38.74486 -35.92506 -35.38685 -34.33097 -33.25095 -32.68731 -31.41972 -31.14402 -28.43036 -27.91719 -26.86685 -25.98104 -23.85328 -23.23364 -21.94547 -21.64101 -20.94501 -20.28048 -19.66836 -18.83855 -18.10060 -17.11863 -16.90056 -16.79772 -16.60401 -16.34806 -16.08718 -15.72593 -15.63380 -15.45948 -15.40919 -14.90209 -14.64901 -14.18255 -13.94934 -13.85160 -13.71639 -13.58479 -13.46794 -13.45391 -13.38530 -13.01719 -12.87932 -12.82959 -12.40363 -12.32772 -12.27987 -12.12878 -12.09118 -11.81198 -11.47107 -11.34644 -10.88874 -10.57373 -10.23269 -10.03396 -9.95919 -9.57002 -9.10672 -8.43988 -5.91922 0.56294 1.17059 1.37399 1.40117 1.47657 1.52939 2.12097 2.28300 2.39184 2.56527 2.81394 3.23203 3.43576 3.56248 3.80866 3.83147 4.06173 4.17580 4.18165 4.22686 4.29233 4.37202 4.42310 4.46104 4.57246 4.58257 4.61631 4.68721 4.69228 4.71216 4.76487 4.88194 4.92094 4.92696 5.20235 5.26234 5.32639 5.39699 5.42641 5.51527 5.61109 5.89330 5.94793 6.15137 6.29630 6.50138 6.64451 6.74549 7.16878 7.38784 7.61815 8.18051 8.73862 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007722 B = 0.003756 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3625.328656 B = 7453.038688 C = 9593.032157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.054 3.946 3 N -0.516 5.516 4 C 0.058 3.942 5 C 0.445 3.555 6 O -0.606 6.606 7 N -0.581 5.581 8 C -0.327 4.327 9 H 0.078 0.922 10 C -0.015 4.015 11 N -0.924 5.924 12 Si 0.990 3.010 13 H -0.270 1.270 14 H -0.272 1.272 15 H -0.274 1.274 16 C 0.072 3.928 17 H 0.114 0.886 18 C -0.182 4.182 19 C 0.130 3.870 20 N -0.702 5.702 21 C 0.591 3.409 22 O -0.597 6.597 23 C -0.318 4.318 24 C 0.085 3.915 25 N -0.327 5.327 26 N -0.363 5.363 27 C 0.086 3.914 28 C 0.129 3.871 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.392 0.608 37 H 0.276 0.724 38 H 0.085 0.915 39 H 0.053 0.947 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.049 0.951 43 H 0.412 0.588 44 H 0.203 0.797 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.117 0.883 48 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.491 9.492 -11.760 20.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.073 4.073 3 N -0.240 5.240 4 C -0.073 4.073 5 C 0.232 3.768 6 O -0.490 6.490 7 N -0.219 5.219 8 C -0.457 4.457 9 H 0.096 0.904 10 C -0.214 4.214 11 N -0.565 5.565 12 Si 0.814 3.186 13 H -0.195 1.195 14 H -0.197 1.197 15 H -0.199 1.199 16 C -0.036 4.036 17 H 0.132 0.868 18 C -0.241 4.241 19 C 0.006 3.994 20 N -0.351 5.351 21 C 0.380 3.620 22 O -0.480 6.480 23 C -0.333 4.333 24 C -0.102 4.102 25 N -0.148 5.148 26 N -0.141 5.141 27 C -0.053 4.053 28 C -0.024 4.024 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.226 0.774 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.067 0.933 43 H 0.248 0.752 44 H 0.219 0.781 45 H 0.117 0.883 46 H 0.113 0.887 47 H 0.135 0.865 48 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -14.665 10.454 -10.352 20.773 hybrid contribution 1.762 -1.050 0.017 2.051 sum -12.903 9.404 -10.335 19.019 Atomic orbital electron populations 1.21647 0.93456 1.01732 1.02222 1.22063 0.97383 0.87986 0.99897 1.61738 1.17999 1.19575 1.24710 1.21682 0.91705 1.02487 0.91416 1.20798 0.83374 0.82002 0.90585 1.90480 1.34100 1.55755 1.68707 1.41968 1.07318 1.64049 1.08604 1.19624 0.93800 1.47281 0.85001 0.90375 1.25998 0.94094 0.96889 1.04440 1.69682 0.98025 1.50476 1.38341 0.84971 0.77782 0.78649 0.77208 1.19507 1.19716 1.19921 1.22099 1.01898 0.92028 0.87576 0.86796 1.22378 0.99327 1.01806 1.00630 1.21471 0.93541 0.92224 0.92169 1.45512 1.36579 1.09600 1.43434 1.17446 0.82274 0.81928 0.80401 1.90708 1.37292 1.63254 1.56789 1.20350 1.06492 0.95826 1.10591 1.24336 0.93063 1.00168 0.92644 1.77123 1.22031 0.91000 1.24633 1.48796 1.24000 1.10113 1.31217 1.22393 1.04747 0.80332 0.97800 1.23327 0.91583 0.97870 0.89590 0.93342 0.90915 0.92003 0.92994 0.94053 0.91648 0.88867 0.77439 0.91486 0.89652 0.92786 0.91256 0.89809 0.93265 0.75182 0.78055 0.88305 0.88665 0.86505 0.77371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.93 71.98 0.71 -2.30 16 2 C 0.05 1.50 5.14 86.30 0.44 1.94 16 3 N -0.52 -14.68 3.56 -875.53 -3.12 -17.80 16 4 C 0.06 2.02 4.19 85.56 0.36 2.38 16 5 C 0.45 21.28 7.19 87.66 0.63 21.91 16 6 O -0.61 -32.79 14.90 -3.07 -0.05 -32.84 16 7 N -0.58 -30.60 5.29 -306.98 -1.62 -32.22 16 8 C -0.33 -18.97 9.68 84.04 0.81 -18.16 16 9 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 10 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 11 N -0.92 -51.28 13.05 21.67 0.28 -51.00 16 12 Si 0.99 44.08 29.55 68.60 2.03 46.10 16 13 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 14 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 15 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 16 C 0.07 1.48 2.35 44.91 0.11 1.58 16 17 H 0.11 1.87 6.74 -2.39 -0.02 1.85 16 18 C -0.18 -3.15 8.51 71.98 0.61 -2.54 16 19 C 0.13 3.11 4.91 86.38 0.42 3.53 16 20 N -0.70 -18.66 5.36 -466.38 -2.50 -21.16 16 21 C 0.59 18.34 7.81 86.67 0.68 19.02 16 22 O -0.60 -21.98 16.89 -4.04 -0.07 -22.05 16 23 C -0.32 -8.84 6.13 -20.15 -0.12 -8.96 16 24 C 0.09 2.25 11.50 85.65 0.99 3.24 16 25 N -0.33 -8.84 12.50 -56.27 -0.70 -9.55 16 26 N -0.36 -7.77 3.98 -367.78 -1.46 -9.23 16 27 C 0.09 0.92 11.44 127.77 1.46 2.38 16 28 C 0.13 2.98 11.30 84.27 0.95 3.93 16 29 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.07 1.24 6.99 -2.39 -0.02 1.22 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 1.20 6.17 -2.38 -0.01 1.18 16 33 H 0.04 1.51 6.55 -2.39 -0.02 1.49 16 34 H 0.07 2.06 7.12 -2.39 -0.02 2.04 16 35 H 0.09 3.18 6.01 -2.39 -0.01 3.17 16 36 H 0.39 19.96 7.90 -92.71 -0.73 19.23 16 37 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.05 1.07 6.68 -2.39 -0.02 1.05 16 40 H 0.07 1.15 6.45 -2.38 -0.02 1.13 16 41 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 42 H 0.05 1.40 6.44 -2.39 -0.02 1.39 16 43 H 0.41 10.17 7.23 -92.71 -0.67 9.50 16 44 H 0.20 4.48 7.50 -2.91 -0.02 4.46 16 45 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.21 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -78.99 394.29 0.92 -78.06 By element: Atomic # 1 Polarization: 44.49 SS G_CDS: -0.40 Total: 44.09 kcal Atomic # 6 Polarization: 19.06 SS G_CDS: 8.52 Total: 27.58 kcal Atomic # 7 Polarization: -131.83 SS G_CDS: -9.12 Total: -140.95 kcal Atomic # 8 Polarization: -54.78 SS G_CDS: -0.11 Total: -54.89 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -78.99 0.92 -78.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151875104.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.173 kcal (2) G-P(sol) polarization free energy of solvation -78.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds