Wall clock time and date at job start Tue Mar 31 2020 20:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46909 * 109.46682 * 2 1 4 4 C 1.46900 * 110.99851 * 292.11426 * 3 2 1 5 5 C 1.50701 * 109.47092 * 289.03695 * 4 3 2 6 6 O 1.21293 * 119.99838 * 354.51083 * 5 4 3 7 7 N 1.34775 * 120.00276 * 174.50582 * 5 4 3 8 8 C 1.37095 * 120.00453 * 179.97438 * 7 5 4 9 9 H 1.08007 * 119.99724 * 0.02562 * 8 7 5 10 10 C 1.38950 * 120.00088 * 180.02562 * 8 7 5 11 11 N 1.31417 * 119.99833 * 180.02562 * 10 8 7 12 12 Si 1.86794 * 120.00216 * 0.02562 * 10 8 7 13 13 H 1.48494 * 109.47454 * 89.99829 * 12 10 8 14 14 H 1.48501 * 109.47216 * 210.00297 * 12 10 8 15 15 H 1.48502 * 109.47017 * 329.99836 * 12 10 8 16 16 C 1.46894 * 110.99880 * 56.06652 * 3 2 1 17 17 H 1.09002 * 109.47261 * 291.65404 * 16 3 2 18 18 C 1.53005 * 109.47010 * 171.65826 * 16 3 2 19 19 C 1.52997 * 109.47432 * 51.65728 * 16 3 2 20 20 N 1.46504 * 109.46813 * 53.78053 * 19 16 3 21 21 C 1.34781 * 119.99943 * 184.16689 * 20 19 16 22 22 O 1.21570 * 120.00182 * 0.02562 * 21 20 19 23 23 C 1.47708 * 120.00055 * 180.02562 * 21 20 19 24 24 C 1.41504 * 126.51842 * 179.71831 * 23 21 20 25 25 C 1.35363 * 105.50295 * 179.84035 * 24 23 21 26 26 C 1.50696 * 126.38643 * 180.13714 * 25 24 23 27 27 N 1.35035 * 107.22799 * 0.40891 * 25 24 23 28 28 H 0.96998 * 124.88319 * 179.72427 * 27 25 24 29 29 N 1.28467 * 110.23087 * 359.72882 * 27 25 24 30 30 H 1.09007 * 109.46748 * 182.23210 * 1 2 3 31 31 H 1.08996 * 109.47392 * 302.23451 * 1 2 3 32 32 H 1.09002 * 109.47256 * 62.23724 * 1 2 3 33 33 H 1.09001 * 109.47367 * 240.00130 * 2 1 3 34 34 H 1.08999 * 109.47210 * 119.99241 * 2 1 3 35 35 H 1.09003 * 109.47559 * 49.03862 * 4 3 2 36 36 H 1.09000 * 109.47072 * 169.04356 * 4 3 2 37 37 H 0.97001 * 119.99872 * 0.02562 * 7 5 4 38 38 H 0.96995 * 119.99722 * 180.02562 * 11 10 8 39 39 H 1.08993 * 109.46949 * 59.99753 * 18 16 3 40 40 H 1.09002 * 109.47238 * 179.97438 * 18 16 3 41 41 H 1.09002 * 109.46764 * 299.99882 * 18 16 3 42 42 H 1.08999 * 109.47368 * 173.78291 * 19 16 3 43 43 H 1.08999 * 109.47485 * 293.78393 * 19 16 3 44 44 H 0.96992 * 120.00237 * 4.17234 * 20 19 16 45 45 H 1.07999 * 127.24695 * 359.97438 * 24 23 21 46 46 H 1.08997 * 109.47077 * 270.34802 * 26 25 24 47 47 H 1.08998 * 109.47102 * 30.34883 * 26 25 24 48 48 H 1.08998 * 109.47293 * 150.34824 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7082 2.0535 -1.2706 5 6 2.5718 1.4803 -2.3645 6 8 3.4365 0.6736 -2.0946 7 7 2.3833 1.8638 -3.6427 8 6 3.1693 1.3428 -4.6378 9 1 3.9393 0.6245 -4.3975 10 6 2.9752 1.7387 -5.9555 11 7 3.7283 1.2388 -6.9095 12 14 1.6440 2.9814 -6.3710 13 1 2.2086 4.3531 -6.3030 14 1 1.1358 2.7227 -7.7422 15 1 0.5290 2.8563 -5.3982 16 6 1.4732 2.1365 1.1378 17 1 0.4014 2.2780 0.9988 18 6 2.1605 3.5007 1.2253 19 6 1.7213 1.3566 2.4305 20 7 3.1468 1.0377 2.5424 21 6 3.5893 0.2783 3.5642 22 8 2.8055 -0.1423 4.3928 23 6 5.0266 -0.0428 3.6774 24 6 5.6390 -0.8183 4.6902 25 6 6.9564 -0.8431 4.3802 26 6 8.0433 -1.5457 5.1521 27 7 7.1159 -0.1158 3.2537 28 1 7.9636 0.0380 2.8081 29 7 5.9835 0.3432 2.8572 30 1 -0.3633 -1.0270 0.0400 31 1 -0.3634 0.5481 0.8692 32 1 -0.3634 0.4787 -0.9094 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 0.6581 1.8957 -1.5164 36 1 1.9029 3.1218 -1.1763 37 1 1.6920 2.5092 -3.8585 38 1 3.5931 1.5155 -7.8292 39 1 1.9838 4.0563 0.3044 40 1 1.7548 4.0585 2.0693 41 1 3.2324 3.3593 1.3643 42 1 1.4163 1.9618 3.2842 43 1 1.1426 0.4331 2.4145 44 1 3.7722 1.3730 1.8812 45 1 5.1564 -1.2926 5.5320 46 1 8.4494 -0.8699 5.9047 47 1 7.6297 -2.4277 5.6411 48 1 8.8371 -1.8478 4.4688 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152120255.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:48 Heat of formation + Delta-G solvation = 15.787554 kcal Electronic energy + Delta-G solvation = -29715.380462 eV Core-core repulsion = 25614.592600 eV Total energy + Delta-G solvation = -4100.787862 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.79086 -39.86887 -38.80760 -37.45313 -34.48863 -33.82116 -32.99336 -32.10885 -31.69245 -31.56164 -29.88534 -27.39444 -26.96197 -26.35434 -24.15532 -23.73308 -22.48786 -21.38842 -20.05297 -19.65472 -19.07667 -18.08122 -17.81282 -16.99823 -16.60067 -16.03179 -15.84378 -15.63919 -15.17062 -14.90987 -14.46697 -14.23677 -14.03578 -13.95532 -13.59520 -13.36730 -13.30235 -13.24400 -13.04170 -12.81835 -12.54904 -12.49797 -12.37536 -12.30213 -11.87867 -11.63534 -11.55616 -11.35813 -11.18529 -10.95096 -10.62274 -10.55244 -10.43969 -10.12038 -9.95758 -9.53971 -9.50939 -9.11668 -8.92434 -8.53638 -8.14544 -7.92867 -6.28834 -3.79761 1.53093 1.94355 2.68452 3.03189 3.07396 3.15648 3.25636 3.46640 3.79492 3.89445 4.11889 4.37408 4.44803 4.66514 4.73584 4.81658 4.97193 5.11502 5.16288 5.24925 5.27467 5.32577 5.39787 5.42025 5.47611 5.48841 5.55819 5.59135 5.65699 5.72059 5.76883 5.82924 5.91329 5.97388 6.09148 6.21242 6.23398 6.25281 6.47332 6.54262 6.81710 7.18626 7.32091 7.54728 7.61683 7.84032 8.17688 8.29412 8.63854 8.98719 9.45873 9.88516 10.84583 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.002768 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.822762 B =10113.878191 C =11461.500322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.048 3.952 3 N -0.505 5.505 4 C 0.035 3.965 5 C 0.455 3.545 6 O -0.555 6.555 7 N -0.595 5.595 8 C -0.301 4.301 9 H 0.119 0.881 10 C 0.040 3.960 11 N -0.884 5.884 12 Si 0.879 3.121 13 H -0.271 1.271 14 H -0.277 1.277 15 H -0.270 1.270 16 C 0.062 3.938 17 H 0.059 0.941 18 C -0.148 4.148 19 C 0.127 3.873 20 N -0.698 5.698 21 C 0.602 3.398 22 O -0.545 6.545 23 C -0.011 4.011 24 C -0.180 4.180 25 C 0.008 3.992 26 C -0.084 4.084 27 N -0.379 5.379 28 H 0.445 0.555 29 N -0.246 5.246 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.369 0.631 38 H 0.272 0.728 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.419 0.581 45 H 0.161 0.839 46 H 0.078 0.922 47 H 0.086 0.914 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.765 1.278 22.459 22.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.080 4.080 3 N -0.229 5.229 4 C -0.096 4.096 5 C 0.241 3.759 6 O -0.436 6.436 7 N -0.235 5.235 8 C -0.430 4.430 9 H 0.136 0.864 10 C -0.163 4.163 11 N -0.524 5.524 12 Si 0.706 3.294 13 H -0.197 1.197 14 H -0.203 1.203 15 H -0.196 1.196 16 C -0.046 4.046 17 H 0.077 0.923 18 C -0.206 4.206 19 C 0.003 3.997 20 N -0.351 5.351 21 C 0.386 3.614 22 O -0.421 6.421 23 C -0.172 4.172 24 C -0.208 4.208 25 C -0.117 4.117 26 C -0.143 4.143 27 N -0.094 5.094 28 H 0.290 0.710 29 N -0.082 5.082 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.201 0.799 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.257 0.743 45 H 0.178 0.822 46 H 0.096 0.904 47 H 0.105 0.895 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.486 1.028 22.091 22.165 hybrid contribution -1.341 0.804 -0.673 1.702 sum 0.145 1.831 21.417 21.496 Atomic orbital electron populations 1.22491 0.98910 1.02338 1.01534 1.22252 0.91810 0.89764 1.04167 1.61830 1.58621 1.01876 1.00541 1.22013 0.97954 0.99545 0.90113 1.19660 0.87362 0.86097 0.82813 1.90564 1.35308 1.35676 1.82028 1.42226 1.33597 1.41064 1.06653 1.19409 1.14547 1.23850 0.85203 0.86352 1.25027 0.97760 0.98024 0.95446 1.69623 1.38886 1.43239 1.00689 0.86681 0.81840 0.82043 0.78857 1.19677 1.20279 1.19582 1.21955 0.97926 0.94203 0.90557 0.92303 1.21917 1.01791 0.95044 1.01838 1.21459 0.82019 0.99785 0.96463 1.45746 1.09742 1.51817 1.27785 1.16879 0.84855 0.78224 0.81412 1.90768 1.55474 1.53887 1.41985 1.21924 0.93921 1.04772 0.96600 1.21489 0.91779 1.05248 1.02301 1.21463 0.97216 1.01241 0.91817 1.20342 0.94914 1.00044 0.98952 1.43360 1.08753 1.37332 1.19976 0.71036 1.73671 0.91399 1.19680 1.23463 0.92133 0.92705 0.92535 0.88977 0.90730 0.93027 0.88960 0.79862 0.91705 0.91981 0.92129 0.91522 0.91101 0.90878 0.74310 0.82165 0.90350 0.89539 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.44 9.01 37.16 0.33 -2.11 16 2 C 0.05 0.73 5.18 -3.82 -0.02 0.71 16 3 N -0.50 -7.53 3.63 -228.08 -0.83 -8.36 16 4 C 0.04 0.56 5.22 -4.98 -0.03 0.54 16 5 C 0.46 10.12 7.32 -10.99 -0.08 10.04 16 6 O -0.55 -14.57 14.65 5.55 0.08 -14.49 16 7 N -0.60 -14.04 5.09 -10.96 -0.06 -14.09 16 8 C -0.30 -8.48 10.16 -14.93 -0.15 -8.63 16 9 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 10 C 0.04 1.09 5.50 -17.47 -0.10 1.00 16 11 N -0.88 -25.88 13.96 55.50 0.77 -25.11 16 12 Si 0.88 19.39 27.74 -169.99 -4.71 14.68 16 13 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 14 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 15 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 16 C 0.06 0.72 1.68 -67.71 -0.11 0.60 16 17 H 0.06 0.61 6.69 -51.93 -0.35 0.27 16 18 C -0.15 -1.55 9.00 37.16 0.33 -1.22 16 19 C 0.13 1.51 4.40 -4.04 -0.02 1.49 16 20 N -0.70 -9.41 4.80 -61.29 -0.29 -9.71 16 21 C 0.60 8.99 7.82 -12.39 -0.10 8.89 16 22 O -0.54 -9.27 16.93 5.30 0.09 -9.18 16 23 C -0.01 -0.15 7.13 -82.77 -0.59 -0.74 16 24 C -0.18 -2.07 10.73 -39.36 -0.42 -2.50 16 25 C 0.01 0.07 7.23 -82.21 -0.59 -0.52 16 26 C -0.08 -0.40 10.44 36.00 0.38 -0.02 16 27 N -0.38 -3.65 6.83 33.50 0.23 -3.43 16 28 H 0.45 2.77 8.96 -190.44 -1.71 1.07 16 29 N -0.25 -3.25 11.92 33.42 0.40 -2.85 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.60 5.76 -51.93 -0.30 0.30 16 32 H 0.06 0.73 6.51 -51.93 -0.34 0.40 16 33 H 0.09 1.75 6.44 -51.93 -0.33 1.42 16 34 H 0.07 1.15 6.34 -51.93 -0.33 0.82 16 35 H 0.05 0.75 6.19 -51.93 -0.32 0.43 16 36 H 0.09 1.31 5.87 -51.93 -0.30 1.00 16 37 H 0.37 7.67 5.76 -40.82 -0.24 7.44 16 38 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 39 H 0.06 0.65 6.24 -51.93 -0.32 0.32 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.77 7.18 -51.93 -0.37 0.40 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.92 6.05 -51.93 -0.31 0.61 16 44 H 0.42 5.96 7.03 -40.82 -0.29 5.68 16 45 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 46 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 47 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 384.73 15.07 5.80 5.80 Total: -1.00 -35.58 384.73 -7.72 -43.30 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: -8.03 Total: 15.92 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -1.16 Total: 7.52 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: 0.22 Total: -63.55 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: 0.17 Total: -23.67 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.71 Total: 14.68 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.58 -7.72 -43.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152120255.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.085 kcal (2) G-P(sol) polarization free energy of solvation -35.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds