Wall clock time and date at job start Tue Mar 31 2020 20:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46909 * 109.46682 * 2 1 4 4 C 1.46900 * 110.99851 * 292.11426 * 3 2 1 5 5 C 1.50701 * 109.47092 * 289.03695 * 4 3 2 6 6 O 1.21293 * 119.99838 * 354.51083 * 5 4 3 7 7 N 1.34775 * 120.00276 * 174.50582 * 5 4 3 8 8 C 1.37095 * 120.00453 * 179.97438 * 7 5 4 9 9 H 1.08007 * 119.99724 * 0.02562 * 8 7 5 10 10 C 1.38950 * 120.00088 * 180.02562 * 8 7 5 11 11 N 1.31417 * 119.99833 * 180.02562 * 10 8 7 12 12 Si 1.86794 * 120.00216 * 0.02562 * 10 8 7 13 13 H 1.48494 * 109.47454 * 89.99829 * 12 10 8 14 14 H 1.48501 * 109.47216 * 210.00297 * 12 10 8 15 15 H 1.48502 * 109.47017 * 329.99836 * 12 10 8 16 16 C 1.46894 * 110.99880 * 56.06652 * 3 2 1 17 17 H 1.09002 * 109.47261 * 291.65404 * 16 3 2 18 18 C 1.53005 * 109.47010 * 171.65826 * 16 3 2 19 19 C 1.52997 * 109.47432 * 51.65728 * 16 3 2 20 20 N 1.46504 * 109.46813 * 53.78053 * 19 16 3 21 21 C 1.34781 * 119.99943 * 184.16689 * 20 19 16 22 22 O 1.21570 * 120.00182 * 0.02562 * 21 20 19 23 23 C 1.47708 * 120.00055 * 180.02562 * 21 20 19 24 24 C 1.41504 * 126.51842 * 179.71831 * 23 21 20 25 25 C 1.35363 * 105.50295 * 179.84035 * 24 23 21 26 26 C 1.50696 * 126.38643 * 180.13714 * 25 24 23 27 27 N 1.35035 * 107.22799 * 0.40891 * 25 24 23 28 28 H 0.96998 * 124.88319 * 179.72427 * 27 25 24 29 29 N 1.28467 * 110.23087 * 359.72882 * 27 25 24 30 30 H 1.09007 * 109.46748 * 182.23210 * 1 2 3 31 31 H 1.08996 * 109.47392 * 302.23451 * 1 2 3 32 32 H 1.09002 * 109.47256 * 62.23724 * 1 2 3 33 33 H 1.09001 * 109.47367 * 240.00130 * 2 1 3 34 34 H 1.08999 * 109.47210 * 119.99241 * 2 1 3 35 35 H 1.09003 * 109.47559 * 49.03862 * 4 3 2 36 36 H 1.09000 * 109.47072 * 169.04356 * 4 3 2 37 37 H 0.97001 * 119.99872 * 0.02562 * 7 5 4 38 38 H 0.96995 * 119.99722 * 180.02562 * 11 10 8 39 39 H 1.08993 * 109.46949 * 59.99753 * 18 16 3 40 40 H 1.09002 * 109.47238 * 179.97438 * 18 16 3 41 41 H 1.09002 * 109.46764 * 299.99882 * 18 16 3 42 42 H 1.08999 * 109.47368 * 173.78291 * 19 16 3 43 43 H 1.08999 * 109.47485 * 293.78393 * 19 16 3 44 44 H 0.96992 * 120.00237 * 4.17234 * 20 19 16 45 45 H 1.07999 * 127.24695 * 359.97438 * 24 23 21 46 46 H 1.08997 * 109.47077 * 270.34802 * 26 25 24 47 47 H 1.08998 * 109.47102 * 30.34883 * 26 25 24 48 48 H 1.08998 * 109.47293 * 150.34824 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7082 2.0535 -1.2706 5 6 2.5718 1.4803 -2.3645 6 8 3.4365 0.6736 -2.0946 7 7 2.3833 1.8638 -3.6427 8 6 3.1693 1.3428 -4.6378 9 1 3.9393 0.6245 -4.3975 10 6 2.9752 1.7387 -5.9555 11 7 3.7283 1.2388 -6.9095 12 14 1.6440 2.9814 -6.3710 13 1 2.2086 4.3531 -6.3030 14 1 1.1358 2.7227 -7.7422 15 1 0.5290 2.8563 -5.3982 16 6 1.4732 2.1365 1.1378 17 1 0.4014 2.2780 0.9988 18 6 2.1605 3.5007 1.2253 19 6 1.7213 1.3566 2.4305 20 7 3.1468 1.0377 2.5424 21 6 3.5893 0.2783 3.5642 22 8 2.8055 -0.1423 4.3928 23 6 5.0266 -0.0428 3.6774 24 6 5.6390 -0.8183 4.6902 25 6 6.9564 -0.8431 4.3802 26 6 8.0433 -1.5457 5.1521 27 7 7.1159 -0.1158 3.2537 28 1 7.9636 0.0380 2.8081 29 7 5.9835 0.3432 2.8572 30 1 -0.3633 -1.0270 0.0400 31 1 -0.3634 0.5481 0.8692 32 1 -0.3634 0.4787 -0.9094 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 0.6581 1.8957 -1.5164 36 1 1.9029 3.1218 -1.1763 37 1 1.6920 2.5092 -3.8585 38 1 3.5931 1.5155 -7.8292 39 1 1.9838 4.0563 0.3044 40 1 1.7548 4.0585 2.0693 41 1 3.2324 3.3593 1.3643 42 1 1.4163 1.9618 3.2842 43 1 1.1426 0.4331 2.4145 44 1 3.7722 1.3730 1.8812 45 1 5.1564 -1.2926 5.5320 46 1 8.4494 -0.8699 5.9047 47 1 7.6297 -2.4277 5.6411 48 1 8.8371 -1.8478 4.4688 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152120255.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:47 Heat of formation + Delta-G solvation = -13.793033 kcal Electronic energy + Delta-G solvation = -29716.663172 eV Core-core repulsion = 25614.592600 eV Total energy + Delta-G solvation = -4102.070572 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.65397 -41.07459 -40.23796 -38.92692 -36.01179 -35.45108 -33.73880 -33.71048 -33.01769 -32.57517 -31.13485 -28.21581 -28.06727 -27.52131 -25.83103 -24.78692 -23.64073 -22.21397 -21.31432 -21.08001 -20.63667 -19.77164 -18.63579 -18.08103 -17.76485 -17.37667 -16.98026 -16.76131 -16.71295 -16.35882 -15.68868 -15.48070 -15.27660 -14.97793 -14.81899 -14.78595 -14.51183 -14.23226 -13.99027 -13.94798 -13.72073 -13.66921 -13.47191 -13.09906 -13.07283 -13.05699 -12.73428 -12.51782 -12.39784 -12.35216 -11.97403 -11.84653 -11.70115 -11.59479 -11.40888 -11.25994 -10.48962 -10.34374 -10.20119 -9.97543 -9.91503 -9.12479 -8.39053 -5.98956 0.53305 1.13228 1.30321 1.36223 1.44577 1.90746 2.02657 2.24235 2.28683 2.39524 2.63699 3.17282 3.27254 3.45995 3.71564 3.82376 4.00738 4.05586 4.11507 4.22228 4.30284 4.35554 4.42501 4.47982 4.53394 4.54024 4.61717 4.69968 4.76559 4.80175 4.90292 5.02862 5.03611 5.06572 5.09666 5.11417 5.30190 5.37636 5.41425 5.45886 5.56112 5.93357 6.06054 6.12067 6.23071 6.49652 6.63733 6.89088 6.92897 7.18430 7.44805 8.03856 8.78965 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.002768 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.822762 B =10113.878191 C =11461.500322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.054 3.946 3 N -0.524 5.524 4 C 0.048 3.952 5 C 0.455 3.545 6 O -0.603 6.603 7 N -0.596 5.596 8 C -0.322 4.322 9 H 0.053 0.947 10 C -0.018 4.018 11 N -0.938 5.938 12 Si 0.964 3.036 13 H -0.257 1.257 14 H -0.277 1.277 15 H -0.231 1.231 16 C 0.069 3.931 17 H 0.086 0.914 18 C -0.147 4.147 19 C 0.125 3.875 20 N -0.694 5.694 21 C 0.597 3.403 22 O -0.573 6.573 23 C -0.038 4.038 24 C -0.206 4.206 25 C 0.030 3.970 26 C -0.082 4.082 27 N -0.370 5.370 28 H 0.459 0.541 29 N -0.276 5.276 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.045 0.955 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.123 0.877 37 H 0.388 0.612 38 H 0.278 0.722 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.049 0.951 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.415 0.585 45 H 0.166 0.834 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.231 3.618 23.984 24.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.074 4.074 3 N -0.248 5.248 4 C -0.082 4.082 5 C 0.242 3.758 6 O -0.486 6.486 7 N -0.239 5.239 8 C -0.451 4.451 9 H 0.071 0.929 10 C -0.216 4.216 11 N -0.579 5.579 12 Si 0.784 3.216 13 H -0.181 1.181 14 H -0.203 1.203 15 H -0.155 1.155 16 C -0.039 4.039 17 H 0.104 0.896 18 C -0.204 4.204 19 C 0.001 3.999 20 N -0.345 5.345 21 C 0.383 3.617 22 O -0.452 6.452 23 C -0.198 4.198 24 C -0.234 4.234 25 C -0.096 4.096 26 C -0.140 4.140 27 N -0.087 5.087 28 H 0.306 0.694 29 N -0.113 5.113 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.141 0.859 37 H 0.223 0.777 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.068 0.932 42 H 0.105 0.895 43 H 0.084 0.916 44 H 0.252 0.748 45 H 0.184 0.816 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.516 3.387 23.630 23.878 hybrid contribution -0.526 -0.050 -1.067 1.191 sum -1.043 3.337 22.564 22.833 Atomic orbital electron populations 1.22403 0.96241 1.03129 1.02580 1.22028 0.93911 0.89893 1.01530 1.61719 1.60045 1.01890 1.01171 1.21919 0.97612 1.00515 0.88186 1.20929 0.86804 0.84512 0.83535 1.90550 1.37547 1.37610 1.82918 1.42052 1.33800 1.41742 1.06302 1.18963 1.14812 1.24065 0.87301 0.92873 1.26101 1.00749 1.00354 0.94375 1.69813 1.41369 1.45312 1.01437 0.85372 0.78613 0.78414 0.79160 1.18101 1.20259 1.15476 1.22039 0.99353 0.93999 0.88483 0.89628 1.21930 1.00800 0.94489 1.03201 1.21601 0.80959 0.99870 0.97425 1.45792 1.10451 1.51171 1.27083 1.17113 0.85351 0.78006 0.81276 1.90730 1.56300 1.55166 1.43026 1.21991 0.93714 1.06212 0.97899 1.21728 0.92964 1.06079 1.02594 1.22044 0.97434 0.99365 0.90791 1.20537 0.93971 1.00308 0.99230 1.43472 1.08533 1.36600 1.20112 0.69385 1.73590 0.92397 1.21043 1.24272 0.91788 0.90311 0.92420 0.93592 0.91423 0.90209 0.85902 0.77676 0.91295 0.91347 0.89717 0.93166 0.89460 0.91565 0.74802 0.81621 0.88520 0.88526 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.27 9.01 71.98 0.65 -3.62 16 2 C 0.05 1.67 5.18 86.30 0.45 2.12 16 3 N -0.52 -14.99 3.63 -875.50 -3.18 -18.17 16 4 C 0.05 1.45 5.22 85.56 0.45 1.89 16 5 C 0.45 20.36 7.32 87.66 0.64 21.00 16 6 O -0.60 -33.36 14.65 -3.07 -0.04 -33.41 16 7 N -0.60 -28.05 5.09 -306.98 -1.56 -29.61 16 8 C -0.32 -18.93 10.16 84.04 0.85 -18.08 16 9 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 10 C -0.02 -0.99 5.50 84.93 0.47 -0.53 16 11 N -0.94 -57.04 13.96 21.66 0.30 -56.74 16 12 Si 0.96 38.92 27.74 68.60 1.90 40.82 16 13 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 14 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 15 H -0.23 -7.83 6.52 99.48 0.65 -7.18 16 16 C 0.07 1.39 1.68 44.92 0.08 1.47 16 17 H 0.09 1.36 6.69 -2.39 -0.02 1.34 16 18 C -0.15 -2.62 9.00 71.98 0.65 -1.97 16 19 C 0.12 2.79 4.40 86.38 0.38 3.17 16 20 N -0.69 -18.88 4.80 -466.10 -2.24 -21.12 16 21 C 0.60 18.39 7.82 86.75 0.68 19.07 16 22 O -0.57 -19.98 16.93 -3.94 -0.07 -20.05 16 23 C -0.04 -1.10 7.13 42.46 0.30 -0.79 16 24 C -0.21 -4.78 10.73 22.41 0.24 -4.54 16 25 C 0.03 0.51 7.23 41.40 0.30 0.81 16 26 C -0.08 -0.58 10.44 71.23 0.74 0.16 16 27 N -0.37 -7.02 6.83 -47.93 -0.33 -7.35 16 28 H 0.46 5.42 8.96 -220.00 -1.97 3.44 16 29 N -0.28 -7.52 11.92 -48.18 -0.57 -8.09 16 30 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.08 1.45 5.76 -2.39 -0.01 1.43 16 32 H 0.06 1.32 6.51 -2.39 -0.02 1.31 16 33 H 0.05 1.83 6.44 -2.39 -0.02 1.82 16 34 H 0.07 2.14 6.34 -2.39 -0.02 2.12 16 35 H 0.08 2.00 6.19 -2.39 -0.01 1.98 16 36 H 0.12 2.99 5.87 -2.39 -0.01 2.97 16 37 H 0.39 15.09 5.76 -92.71 -0.53 14.55 16 38 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 39 H 0.07 1.14 6.24 -2.39 -0.01 1.13 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.05 1.07 7.18 -2.39 -0.02 1.06 16 42 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.07 1.59 6.05 -2.39 -0.01 1.57 16 44 H 0.41 12.11 7.03 -92.71 -0.65 11.46 16 45 H 0.17 3.49 8.06 -2.91 -0.02 3.46 16 46 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 Total: -1.00 -85.67 384.73 -1.10 -86.76 By element: Atomic # 1 Polarization: 48.95 SS G_CDS: -2.18 Total: 46.78 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 6.87 Total: 20.18 kcal Atomic # 7 Polarization: -133.50 SS G_CDS: -7.58 Total: -141.08 kcal Atomic # 8 Polarization: -53.35 SS G_CDS: -0.11 Total: -53.46 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 1.90 Total: 40.82 kcal Total: -85.67 -1.10 -86.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152120255.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.970 kcal (2) G-P(sol) polarization free energy of solvation -85.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds